Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c251' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6407839-fedora-rawhide-ppc64le --chroot fedora-rawhide-ppc64le Version: 0.69 PID: 5917 Logging PID: 5918 Task: {'appstream': False, 'background': True, 'build_id': 6407839, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': 'df6b1de2eecf9ffcb551247d0ec58aa16cf5b345', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/python-pysam', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-pysam', 'package_version': '0.21.0-2', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6407839-fedora-rawhide-ppc64le', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/python-pysam /var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/python-pysam', '/var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam'... Running: git checkout df6b1de2eecf9ffcb551247d0ec58aa16cf5b345 -- cmd: ['git', 'checkout', 'df6b1de2eecf9ffcb551247d0ec58aa16cf5b345', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam rc: 0 stdout: stderr: Note: switching to 'df6b1de2eecf9ffcb551247d0ec58aa16cf5b345'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at df6b1de automatic import of python-pysam Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pysam-0.21.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pysam-0.21.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/python-pysam/pysam-0.21.0.tar.gz/md5/dca7fb36d2cf69ef887fe05ddd726998/pysam-0.21.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3957k 100 3957k 0 0 10.9M 0 --:--:-- --:--:-- --:--:-- 10.9M INFO: Reading stdout from command: md5sum pysam-0.21.0.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam/python-pysam.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1694963795.467607 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1 starting (python version = 3.11.3, NVR = mock-5.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam/python-pysam.spec) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Mock Version: 5.1 INFO: Mock Version: 5.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1694963795.467607/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1694963795.467607/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/abfc5e407ec7070770d5ef31a56388c2b9f2199b2e2eb3b7f68dad9a04db193c/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/abfc5e407ec7070770d5ef31a56388c2b9f2199b2e2eb3b7f68dad9a04db193c/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.8 MB/s | 1.4 MB 00:00 fedora 13 MB/s | 67 MB 00:05 Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs ppc64le 1:1.14.10-1.fc40 fedora 177 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus ppc64le 1.3.2-4.fc39 fedora 161 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd ppc64le 235-5.fc39 fedora 108 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.2 M Installed size: 4.8 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.ppc64le.rpm 456 kB/s | 177 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.ppc64le.rpm 413 kB/s | 161 kB 00:00 (3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 1.2 MB/s | 49 kB 00:00 (4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 739 kB/s | 355 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 857 kB/s | 41 kB 00:00 (6/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 1.7 MB/s | 293 kB 00:00 (7/7): python3-systemd-235-5.fc39.ppc64le.rpm 1.4 MB/s | 108 kB 00:00 -------------------------------------------------------------------------------- Total 1.6 MB/s | 1.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.ppc64le 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.ppc64le 5/7 Installing : python3-dbus-1.3.2-4.fc39.ppc64le 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.ppc64le 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.ppc64le 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.ppc64le 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.ppc64le python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.ppc64le python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.ppc64le Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.3 MB/s | 1.4 MB 00:01 fedora 9.5 MB/s | 67 MB 00:07 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash ppc64le 5.2.15-5.fc39 fedora 1.9 M bzip2 ppc64le 1.0.8-16.fc39 fedora 53 k coreutils ppc64le 9.4-1.fc40 fedora 1.4 M cpio ppc64le 2.14-4.fc39 fedora 286 k diffutils ppc64le 3.10-3.fc39 fedora 408 k fedora-release-common noarch 40-0.7 fedora 18 k findutils ppc64le 1:4.9.0-6.fc40 fedora 540 k gawk ppc64le 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack ppc64le 2.38.9000-8.fc40 copr_base 73 k grep ppc64le 3.11-5.fc40 fedora 308 k gzip ppc64le 1.12-6.fc39 fedora 170 k info ppc64le 7.0.3-3.fc39 fedora 200 k patch ppc64le 2.7.6-22.fc39 fedora 137 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build ppc64le 4.18.99-1.fc40 fedora 80 k sed ppc64le 4.8-14.fc39 fedora 312 k shadow-utils ppc64le 2:4.14.0-1.fc40 fedora 1.3 M tar ppc64le 2:1.35-2.fc40 fedora 884 k unzip ppc64le 6.0-62.fc39 fedora 190 k util-linux ppc64le 2.39.2-1.fc40 fedora 1.3 M which ppc64le 2.21-40.fc39 fedora 43 k xz ppc64le 5.4.4-1.fc39 fedora 559 k Installing dependencies: alternatives ppc64le 1.25-1.fc39 fedora 41 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs ppc64le 3.1.2-4.fc40 fedora 132 k authselect ppc64le 1.4.2-3.fc39 fedora 145 k authselect-libs ppc64le 1.4.2-3.fc39 fedora 253 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils ppc64le 2.41-5.fc40 fedora 6.4 M binutils-gold ppc64le 2.41-5.fc40 fedora 1.1 M bzip2-libs ppc64le 1.0.8-16.fc39 fedora 47 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common ppc64le 9.4-1.fc40 fedora 2.1 M cracklib ppc64le 2.9.11-2.fc40 copr_base 86 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl ppc64le 8.3.0-1.fc40 copr_base 357 k cyrus-sasl-lib ppc64le 2.1.28-11.fc39 fedora 877 k debugedit ppc64le 5.0-10.fc39 fedora 80 k dwz ppc64le 0.15-3.fc39 fedora 147 k ed ppc64le 1.19-4.fc39 fedora 81 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils ppc64le 0.189-6.fc40 fedora 567 k elfutils-debuginfod-client ppc64le 0.189-6.fc40 fedora 40 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf ppc64le 0.189-6.fc40 fedora 204 k elfutils-libs ppc64le 0.189-6.fc40 fedora 293 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file ppc64le 5.45-1.fc40 copr_base 50 k file-libs ppc64le 5.45-1.fc40 copr_base 775 k filesystem ppc64le 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal ppc64le 13.2-8.fc40 fedora 4.2 M gdbm-libs ppc64le 1:1.23-4.fc39 fedora 62 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc ppc64le 2.38.9000-8.fc40 copr_base 2.2 M glibc-common ppc64le 2.38.9000-8.fc40 copr_base 364 k glibc-gconv-extra ppc64le 2.38.9000-8.fc40 copr_base 2.0 M gmp ppc64le 1:6.2.1-5.fc39 fedora 304 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson ppc64le 2.13.1-7.fc39 fedora 49 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs ppc64le 1.6.1-7.fc39 fedora 32 k krb5-libs ppc64le 1.21.2-1.fc40 fedora 850 k libacl ppc64le 2.3.1-9.fc40 fedora 26 k libarchive ppc64le 3.7.2-1.fc40 fedora 477 k libattr ppc64le 2.5.1-9.fc40 fedora 19 k libblkid ppc64le 2.39.2-1.fc40 fedora 133 k libbrotli ppc64le 1.1.0-1.fc40 fedora 380 k libcap ppc64le 2.48-7.fc39 fedora 73 k libcap-ng ppc64le 0.8.3-8.fc40 fedora 33 k libcom_err ppc64le 1.47.0-2.fc39 fedora 27 k libcurl ppc64le 8.3.0-1.fc40 copr_base 380 k libdb ppc64le 5.3.28-58.fc40 copr_base 831 k libeconf ppc64le 0.5.2-1.fc40 fedora 34 k libevent ppc64le 2.1.12-9.fc39 fedora 275 k libfdisk ppc64le 2.39.2-1.fc40 fedora 178 k libffi ppc64le 3.4.4-4.fc39 fedora 38 k libgcc ppc64le 13.2.1-1.fc39 fedora 104 k libgomp ppc64le 13.2.1-1.fc39 fedora 332 k libidn2 ppc64le 2.3.4-3.fc39 fedora 121 k libmount ppc64le 2.39.2-1.fc40 fedora 176 k libnghttp2 ppc64le 1.56.0-1.fc40 fedora 84 k libnsl2 ppc64le 2.0.0-6.fc39 fedora 32 k libpkgconf ppc64le 1.9.5-2.fc39 fedora 42 k libpsl ppc64le 0.21.2-4.fc39 fedora 65 k libpwquality ppc64le 1.4.5-6.fc39 fedora 123 k librtas ppc64le 2.0.4-3.fc39 fedora 70 k libselinux ppc64le 3.5-5.fc39 fedora 100 k libsemanage ppc64le 3.5-4.fc39 fedora 131 k libsepol ppc64le 3.5-2.fc39 fedora 356 k libsigsegv ppc64le 2.14-5.fc39 fedora 28 k libsmartcols ppc64le 2.39.2-1.fc40 fedora 73 k libssh ppc64le 0.10.5-2.fc39 fedora 238 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ ppc64le 13.2.1-1.fc39 fedora 994 k libtasn1 ppc64le 4.19.0-3.fc39 fedora 80 k libtirpc ppc64le 1.3.3-1.rc2.fc39 fedora 108 k libunistring ppc64le 1.1-5.fc40 fedora 578 k libutempter ppc64le 1.2.1-10.fc39 fedora 27 k libuuid ppc64le 2.39.2-1.fc40 fedora 30 k libverto ppc64le 0.3.2-6.fc39 fedora 22 k libxcrypt ppc64le 4.4.36-2.fc39 fedora 132 k libxml2 ppc64le 2.11.5-1.fc40 copr_base 778 k libzstd ppc64le 1.5.5-4.fc40 copr_base 336 k lua-libs ppc64le 5.4.6-3.fc39 fedora 149 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs ppc64le 1.9.4-4.fc39 fedora 85 k mpfr ppc64le 4.2.0-3.fc39 fedora 353 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs ppc64le 6.4-7.20230520.fc40 fedora 380 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap ppc64le 2.6.6-1.fc39 fedora 287 k openssl-libs ppc64le 1:3.1.1-4.fc40 copr_base 2.3 M p11-kit ppc64le 0.25.0-2.fc39 fedora 500 k p11-kit-trust ppc64le 0.25.0-2.fc39 fedora 156 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam ppc64le 1.5.3-2.fc39 fedora 592 k pam-libs ppc64le 1.5.3-2.fc39 fedora 64 k pcre2 ppc64le 10.42-1.fc39.2 fedora 241 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf ppc64le 1.9.5-2.fc39 fedora 43 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config ppc64le 1.9.5-2.fc39 fedora 9.6 k popt ppc64le 1.19-3.fc39 fedora 71 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline ppc64le 8.2-4.fc39 fedora 229 k rpm ppc64le 4.18.99-1.fc40 fedora 537 k rpm-build-libs ppc64le 4.18.99-1.fc40 fedora 103 k rpm-libs ppc64le 4.18.99-1.fc40 fedora 356 k rpm-sequoia ppc64le 1.5.0-1.fc40 fedora 1.7 M rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs ppc64le 3.43.1-1.fc40 fedora 798 k systemd-libs ppc64le 254.1-2.fc40 fedora 733 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core ppc64le 2.39.2-1.fc40 fedora 534 k xxhash-libs ppc64le 0.8.2-1.fc39 fedora 37 k xz-libs ppc64le 5.4.4-1.fc39 fedora 121 k zip ppc64le 3.0-38.fc39 fedora 274 k zlib-ng-compat ppc64le 2.1.3-3.fc40 copr_base 83 k zstd ppc64le 1.5.5-4.fc40 copr_base 500 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 57 M Installed size: 327 M Downloading Packages: (1/154): cracklib-2.9.11-2.fc40.ppc64le.rpm 334 kB/s | 86 kB 00:00 (2/154): file-5.45-1.fc40.ppc64le.rpm 181 kB/s | 50 kB 00:00 (3/154): curl-8.3.0-1.fc40.ppc64le.rpm 1.0 MB/s | 357 kB 00:00 (4/154): file-libs-5.45-1.fc40.ppc64le.rpm 4.8 MB/s | 775 kB 00:00 (5/154): glibc-common-2.38.9000-8.fc40.ppc64le. 3.2 MB/s | 364 kB 00:00 (6/154): glibc-2.38.9000-8.fc40.ppc64le.rpm 8.7 MB/s | 2.2 MB 00:00 (7/154): glibc-gconv-extra-2.38.9000-8.fc40.ppc 15 MB/s | 2.0 MB 00:00 (8/154): glibc-minimal-langpack-2.38.9000-8.fc4 841 kB/s | 73 kB 00:00 (9/154): libcurl-8.3.0-1.fc40.ppc64le.rpm 11 MB/s | 380 kB 00:00 (10/154): libxml2-2.11.5-1.fc40.ppc64le.rpm 25 MB/s | 778 kB 00:00 (11/154): libdb-5.3.28-58.fc40.ppc64le.rpm 18 MB/s | 831 kB 00:00 (12/154): libzstd-1.5.5-4.fc40.ppc64le.rpm 9.9 MB/s | 336 kB 00:00 (13/154): openssl-libs-3.1.1-4.fc40.ppc64le.rpm 30 MB/s | 2.3 MB 00:00 (14/154): redhat-rpm-config-270-1.fc40.noarch.r 1.2 MB/s | 74 kB 00:00 (15/154): zlib-ng-compat-2.1.3-3.fc40.ppc64le.r 1.8 MB/s | 83 kB 00:00 (16/154): zstd-1.5.5-4.fc40.ppc64le.rpm 11 MB/s | 500 kB 00:00 (17/154): ansible-srpm-macros-1-11.fc39.noarch. 137 kB/s | 21 kB 00:00 (18/154): alternatives-1.25-1.fc39.ppc64le.rpm 226 kB/s | 41 kB 00:00 (19/154): audit-libs-3.1.2-4.fc40.ppc64le.rpm 558 kB/s | 132 kB 00:00 (20/154): authselect-1.4.2-3.fc39.ppc64le.rpm 855 kB/s | 145 kB 00:00 (21/154): basesystem-11-18.fc39.noarch.rpm 140 kB/s | 7.2 kB 00:00 (22/154): authselect-libs-1.4.2-3.fc39.ppc64le. 1.2 MB/s | 253 kB 00:00 (23/154): bash-5.2.15-5.fc39.ppc64le.rpm 8.9 MB/s | 1.9 MB 00:00 (24/154): binutils-gold-2.41-5.fc40.ppc64le.rpm 6.9 MB/s | 1.1 MB 00:00 (25/154): bzip2-1.0.8-16.fc39.ppc64le.rpm 931 kB/s | 53 kB 00:00 (26/154): bzip2-libs-1.0.8-16.fc39.ppc64le.rpm 798 kB/s | 47 kB 00:00 (27/154): binutils-2.41-5.fc40.ppc64le.rpm 18 MB/s | 6.4 MB 00:00 (28/154): ca-certificates-2023.2.60_v7.0.306-3. 9.9 MB/s | 837 kB 00:00 (29/154): coreutils-9.4-1.fc40.ppc64le.rpm 15 MB/s | 1.4 MB 00:00 (30/154): crypto-policies-20230731-1.git5ed06e0 2.3 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tar-1.35-2.fc40.ppc64le.rpm 16 MB/s | 884 kB 00:00 (146/154): tzdata-2023c-3.fc40.noarch.rpm 11 MB/s | 718 kB 00:00 (147/154): unzip-6.0-62.fc39.ppc64le.rpm 3.8 MB/s | 190 kB 00:00 (148/154): util-linux-2.39.2-1.fc40.ppc64le.rpm 26 MB/s | 1.3 MB 00:00 (149/154): util-linux-core-2.39.2-1.fc40.ppc64l 11 MB/s | 534 kB 00:00 (150/154): which-2.21-40.fc39.ppc64le.rpm 995 kB/s | 43 kB 00:00 (151/154): xxhash-libs-0.8.2-1.fc39.ppc64le.rpm 852 kB/s | 37 kB 00:00 (152/154): xz-5.4.4-1.fc39.ppc64le.rpm 9.0 MB/s | 559 kB 00:00 (153/154): xz-libs-5.4.4-1.fc39.ppc64le.rpm 1.9 MB/s | 121 kB 00:00 (154/154): zip-3.0-38.fc39.ppc64le.rpm 4.2 MB/s | 274 kB 00:00 -------------------------------------------------------------------------------- Total 14 MB/s | 57 MB 00:04 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc39.ppc64le 1/154 Running scriptlet: libgcc-13.2.1-1.fc39.ppc64le 1/154 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/154 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/154 Installing : tzdata-2023c-3.fc40.noarch 3/154 Installing : fedora-release-identity-basic-40-0.7.noarch 4/154 Installing : fedora-repos-rawhide-40-0.1.noarch 5/154 Installing : fedora-gpg-keys-40-0.1.noarch 6/154 Installing : fedora-repos-40-0.1.noarch 7/154 Installing : fedora-release-common-40-0.7.noarch 8/154 Installing : fedora-release-40-0.7.noarch 9/154 Installing : setup-2.14.4-1.fc39.noarch 10/154 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 10/154 Installing : filesystem-3.18-6.fc39.ppc64le 11/154 Installing : basesystem-11-18.fc39.noarch 12/154 Installing : rust-srpm-macros-24-5.fc40.noarch 13/154 Installing : qt6-srpm-macros-6.5.2-2.fc39.noarch 14/154 Installing : qt5-srpm-macros-5.15.10-2.fc39.noarch 15/154 Installing : pyproject-srpm-macros-1.9.0-2.fc39.noarch 16/154 Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 17/154 Installing : pkgconf-m4-1.9.5-2.fc39.noarch 18/154 Installing : perl-srpm-macros-1-51.fc39.noarch 19/154 Installing : pcre2-syntax-10.42-1.fc39.2.noarch 20/154 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 21/154 Installing : openblas-srpm-macros-2-14.fc39.noarch 22/154 Installing : ocaml-srpm-macros-8-2.fc39.noarch 23/154 Installing : ncurses-base-6.4-7.20230520.fc40.noarch 24/154 Installing : glibc-gconv-extra-2.38.9000-8.fc40.ppc64le 25/154 Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.ppc64le 25/154 Installing : glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le 26/154 Installing : glibc-common-2.38.9000-8.fc40.ppc64le 27/154 Running scriptlet: glibc-2.38.9000-8.fc40.ppc64le 28/154 Installing : glibc-2.38.9000-8.fc40.ppc64le 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go-srpm-macros-3.2.0-7.fc40.noarch 148/154 Installing : python-srpm-macros-3.12-4.fc40.noarch 149/154 Installing : redhat-rpm-config-270-1.fc40.noarch 150/154 Installing : rpm-build-4.18.99-1.fc40.ppc64le 151/154 Installing : util-linux-2.39.2-1.fc40.ppc64le 152/154 Installing : which-2.21-40.fc39.ppc64le 153/154 Installing : info-7.0.3-3.fc39.ppc64le 154/154 Running scriptlet: filesystem-3.18-6.fc39.ppc64le 154/154 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 154/154 Running scriptlet: authselect-libs-1.4.2-3.fc39.ppc64le 154/154 Running scriptlet: rpm-4.18.99-1.fc40.ppc64le 154/154 Running scriptlet: info-7.0.3-3.fc39.ppc64le 154/154 Verifying : cracklib-2.9.11-2.fc40.ppc64le 1/154 Verifying : curl-8.3.0-1.fc40.ppc64le 2/154 Verifying : file-5.45-1.fc40.ppc64le 3/154 Verifying : file-libs-5.45-1.fc40.ppc64le 4/154 Verifying : glibc-2.38.9000-8.fc40.ppc64le 5/154 Verifying : glibc-common-2.38.9000-8.fc40.ppc64le 6/154 Verifying : glibc-gconv-extra-2.38.9000-8.fc40.ppc64le 7/154 Verifying : glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le 8/154 Verifying : libcurl-8.3.0-1.fc40.ppc64le 9/154 Verifying : libdb-5.3.28-58.fc40.ppc64le 10/154 Verifying : libxml2-2.11.5-1.fc40.ppc64le 11/154 Verifying : libzstd-1.5.5-4.fc40.ppc64le 12/154 Verifying : openssl-libs-1:3.1.1-4.fc40.ppc64le 13/154 Verifying : redhat-rpm-config-270-1.fc40.noarch 14/154 Verifying : zlib-ng-compat-2.1.3-3.fc40.ppc64le 15/154 Verifying : zstd-1.5.5-4.fc40.ppc64le 16/154 Verifying : alternatives-1.25-1.fc39.ppc64le 17/154 Verifying : ansible-srpm-macros-1-11.fc39.noarch 18/154 Verifying : audit-libs-3.1.2-4.fc40.ppc64le 19/154 Verifying : authselect-1.4.2-3.fc39.ppc64le 20/154 Verifying : authselect-libs-1.4.2-3.fc39.ppc64le 21/154 Verifying : basesystem-11-18.fc39.noarch 22/154 Verifying : bash-5.2.15-5.fc39.ppc64le 23/154 Verifying : binutils-2.41-5.fc40.ppc64le 24/154 Verifying : binutils-gold-2.41-5.fc40.ppc64le 25/154 Verifying : bzip2-1.0.8-16.fc39.ppc64le 26/154 Verifying : bzip2-libs-1.0.8-16.fc39.ppc64le 27/154 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 28/154 Verifying : coreutils-9.4-1.fc40.ppc64le 29/154 Verifying : coreutils-common-9.4-1.fc40.ppc64le 30/154 Verifying : cpio-2.14-4.fc39.ppc64le 31/154 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 32/154 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.ppc64le 33/154 Verifying : debugedit-5.0-10.fc39.ppc64le 34/154 Verifying : diffutils-3.10-3.fc39.ppc64le 35/154 Verifying : dwz-0.15-3.fc39.ppc64le 36/154 Verifying : ed-1.19-4.fc39.ppc64le 37/154 Verifying : efi-srpm-macros-5-9.fc39.noarch 38/154 Verifying : elfutils-0.189-6.fc40.ppc64le 39/154 Verifying : elfutils-debuginfod-client-0.189-6.fc40.ppc64le 40/154 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 41/154 Verifying : elfutils-libelf-0.189-6.fc40.ppc64le 42/154 Verifying : elfutils-libs-0.189-6.fc40.ppc64le 43/154 Verifying : fedora-gpg-keys-40-0.1.noarch 44/154 Verifying : fedora-release-40-0.7.noarch 45/154 Verifying : fedora-release-common-40-0.7.noarch 46/154 Verifying : fedora-release-identity-basic-40-0.7.noarch 47/154 Verifying : fedora-repos-40-0.1.noarch 48/154 Verifying : fedora-repos-rawhide-40-0.1.noarch 49/154 Verifying : filesystem-3.18-6.fc39.ppc64le 50/154 Verifying : findutils-1:4.9.0-6.fc40.ppc64le 51/154 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 52/154 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 53/154 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 54/154 Verifying : gawk-5.2.2-2.fc39.ppc64le 55/154 Verifying : gdb-minimal-13.2-8.fc40.ppc64le 56/154 Verifying : gdbm-libs-1:1.23-4.fc39.ppc64le 57/154 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 58/154 Verifying : gmp-1:6.2.1-5.fc39.ppc64le 59/154 Verifying : gnat-srpm-macros-6-3.fc39.noarch 60/154 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 61/154 Verifying : grep-3.11-5.fc40.ppc64le 62/154 Verifying : gzip-1.12-6.fc39.ppc64le 63/154 Verifying : info-7.0.3-3.fc39.ppc64le 64/154 Verifying : jansson-2.13.1-7.fc39.ppc64le 65/154 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 66/154 Verifying : keyutils-libs-1.6.1-7.fc39.ppc64le 67/154 Verifying : krb5-libs-1.21.2-1.fc40.ppc64le 68/154 Verifying : libacl-2.3.1-9.fc40.ppc64le 69/154 Verifying : libarchive-3.7.2-1.fc40.ppc64le 70/154 Verifying : libattr-2.5.1-9.fc40.ppc64le 71/154 Verifying : libblkid-2.39.2-1.fc40.ppc64le 72/154 Verifying : libbrotli-1.1.0-1.fc40.ppc64le 73/154 Verifying : libcap-2.48-7.fc39.ppc64le 74/154 Verifying : libcap-ng-0.8.3-8.fc40.ppc64le 75/154 Verifying : libcom_err-1.47.0-2.fc39.ppc64le 76/154 Verifying : libeconf-0.5.2-1.fc40.ppc64le 77/154 Verifying : libevent-2.1.12-9.fc39.ppc64le 78/154 Verifying : libfdisk-2.39.2-1.fc40.ppc64le 79/154 Verifying : libffi-3.4.4-4.fc39.ppc64le 80/154 Verifying : libgcc-13.2.1-1.fc39.ppc64le 81/154 Verifying : libgomp-13.2.1-1.fc39.ppc64le 82/154 Verifying : libidn2-2.3.4-3.fc39.ppc64le 83/154 Verifying : libmount-2.39.2-1.fc40.ppc64le 84/154 Verifying : libnghttp2-1.56.0-1.fc40.ppc64le 85/154 Verifying : libnsl2-2.0.0-6.fc39.ppc64le 86/154 Verifying : libpkgconf-1.9.5-2.fc39.ppc64le 87/154 Verifying : libpsl-0.21.2-4.fc39.ppc64le 88/154 Verifying : libpwquality-1.4.5-6.fc39.ppc64le 89/154 Verifying : librtas-2.0.4-3.fc39.ppc64le 90/154 Verifying : libselinux-3.5-5.fc39.ppc64le 91/154 Verifying : libsemanage-3.5-4.fc39.ppc64le 92/154 Verifying : libsepol-3.5-2.fc39.ppc64le 93/154 Verifying : libsigsegv-2.14-5.fc39.ppc64le 94/154 Verifying : libsmartcols-2.39.2-1.fc40.ppc64le 95/154 Verifying : libssh-0.10.5-2.fc39.ppc64le 96/154 Verifying : libssh-config-0.10.5-2.fc39.noarch 97/154 Verifying : libstdc++-13.2.1-1.fc39.ppc64le 98/154 Verifying : libtasn1-4.19.0-3.fc39.ppc64le 99/154 Verifying : libtirpc-1.3.3-1.rc2.fc39.ppc64le 100/154 Verifying : libunistring-1.1-5.fc40.ppc64le 101/154 Verifying : libutempter-1.2.1-10.fc39.ppc64le 102/154 Verifying : libuuid-2.39.2-1.fc40.ppc64le 103/154 Verifying : libverto-0.3.2-6.fc39.ppc64le 104/154 Verifying : libxcrypt-4.4.36-2.fc39.ppc64le 105/154 Verifying : lua-libs-5.4.6-3.fc39.ppc64le 106/154 Verifying : lua-srpm-macros-1-9.fc39.noarch 107/154 Verifying : lz4-libs-1.9.4-4.fc39.ppc64le 108/154 Verifying : mpfr-4.2.0-3.fc39.ppc64le 109/154 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 110/154 Verifying : ncurses-libs-6.4-7.20230520.fc40.ppc64le 111/154 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 112/154 Verifying : openblas-srpm-macros-2-14.fc39.noarch 113/154 Verifying : openldap-2.6.6-1.fc39.ppc64le 114/154 Verifying : p11-kit-0.25.0-2.fc39.ppc64le 115/154 Verifying : p11-kit-trust-0.25.0-2.fc39.ppc64le 116/154 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 117/154 Verifying : pam-1.5.3-2.fc39.ppc64le 118/154 Verifying : pam-libs-1.5.3-2.fc39.ppc64le 119/154 Verifying : patch-2.7.6-22.fc39.ppc64le 120/154 Verifying : pcre2-10.42-1.fc39.2.ppc64le 121/154 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 122/154 Verifying : perl-srpm-macros-1-51.fc39.noarch 123/154 Verifying : pkgconf-1.9.5-2.fc39.ppc64le 124/154 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 125/154 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.ppc64le 126/154 Verifying : popt-1.19-3.fc39.ppc64le 127/154 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 128/154 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 129/154 Verifying : python-srpm-macros-3.12-4.fc40.noarch 130/154 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 131/154 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 132/154 Verifying : readline-8.2-4.fc39.ppc64le 133/154 Verifying : rpm-4.18.99-1.fc40.ppc64le 134/154 Verifying : rpm-build-4.18.99-1.fc40.ppc64le 135/154 Verifying : rpm-build-libs-4.18.99-1.fc40.ppc64le 136/154 Verifying : rpm-libs-4.18.99-1.fc40.ppc64le 137/154 Verifying : rpm-sequoia-1.5.0-1.fc40.ppc64le 138/154 Verifying : rust-srpm-macros-24-5.fc40.noarch 139/154 Verifying : sed-4.8-14.fc39.ppc64le 140/154 Verifying : setup-2.14.4-1.fc39.noarch 141/154 Verifying : shadow-utils-2:4.14.0-1.fc40.ppc64le 142/154 Verifying : sqlite-libs-3.43.1-1.fc40.ppc64le 143/154 Verifying : systemd-libs-254.1-2.fc40.ppc64le 144/154 Verifying : tar-2:1.35-2.fc40.ppc64le 145/154 Verifying : tzdata-2023c-3.fc40.noarch 146/154 Verifying : unzip-6.0-62.fc39.ppc64le 147/154 Verifying : util-linux-2.39.2-1.fc40.ppc64le 148/154 Verifying : util-linux-core-2.39.2-1.fc40.ppc64le 149/154 Verifying : which-2.21-40.fc39.ppc64le 150/154 Verifying : xxhash-libs-0.8.2-1.fc39.ppc64le 151/154 Verifying : xz-5.4.4-1.fc39.ppc64le 152/154 Verifying : xz-libs-5.4.4-1.fc39.ppc64le 153/154 Verifying : zip-3.0-38.fc39.ppc64le 154/154 Installed: alternatives-1.25-1.fc39.ppc64le ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.ppc64le authselect-1.4.2-3.fc39.ppc64le authselect-libs-1.4.2-3.fc39.ppc64le basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.ppc64le binutils-2.41-5.fc40.ppc64le binutils-gold-2.41-5.fc40.ppc64le bzip2-1.0.8-16.fc39.ppc64le bzip2-libs-1.0.8-16.fc39.ppc64le ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.ppc64le coreutils-common-9.4-1.fc40.ppc64le cpio-2.14-4.fc39.ppc64le cracklib-2.9.11-2.fc40.ppc64le crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.ppc64le cyrus-sasl-lib-2.1.28-11.fc39.ppc64le debugedit-5.0-10.fc39.ppc64le diffutils-3.10-3.fc39.ppc64le dwz-0.15-3.fc39.ppc64le ed-1.19-4.fc39.ppc64le efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.ppc64le elfutils-debuginfod-client-0.189-6.fc40.ppc64le elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.ppc64le elfutils-libs-0.189-6.fc40.ppc64le fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.ppc64le file-libs-5.45-1.fc40.ppc64le filesystem-3.18-6.fc39.ppc64le findutils-1:4.9.0-6.fc40.ppc64le fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.ppc64le gdb-minimal-13.2-8.fc40.ppc64le gdbm-libs-1:1.23-4.fc39.ppc64le ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.ppc64le glibc-common-2.38.9000-8.fc40.ppc64le glibc-gconv-extra-2.38.9000-8.fc40.ppc64le glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le gmp-1:6.2.1-5.fc39.ppc64le gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.ppc64le gzip-1.12-6.fc39.ppc64le info-7.0.3-3.fc39.ppc64le jansson-2.13.1-7.fc39.ppc64le kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.ppc64le krb5-libs-1.21.2-1.fc40.ppc64le libacl-2.3.1-9.fc40.ppc64le libarchive-3.7.2-1.fc40.ppc64le libattr-2.5.1-9.fc40.ppc64le libblkid-2.39.2-1.fc40.ppc64le libbrotli-1.1.0-1.fc40.ppc64le libcap-2.48-7.fc39.ppc64le libcap-ng-0.8.3-8.fc40.ppc64le libcom_err-1.47.0-2.fc39.ppc64le libcurl-8.3.0-1.fc40.ppc64le libdb-5.3.28-58.fc40.ppc64le libeconf-0.5.2-1.fc40.ppc64le libevent-2.1.12-9.fc39.ppc64le libfdisk-2.39.2-1.fc40.ppc64le libffi-3.4.4-4.fc39.ppc64le libgcc-13.2.1-1.fc39.ppc64le libgomp-13.2.1-1.fc39.ppc64le libidn2-2.3.4-3.fc39.ppc64le libmount-2.39.2-1.fc40.ppc64le libnghttp2-1.56.0-1.fc40.ppc64le libnsl2-2.0.0-6.fc39.ppc64le libpkgconf-1.9.5-2.fc39.ppc64le libpsl-0.21.2-4.fc39.ppc64le libpwquality-1.4.5-6.fc39.ppc64le librtas-2.0.4-3.fc39.ppc64le libselinux-3.5-5.fc39.ppc64le libsemanage-3.5-4.fc39.ppc64le libsepol-3.5-2.fc39.ppc64le libsigsegv-2.14-5.fc39.ppc64le libsmartcols-2.39.2-1.fc40.ppc64le libssh-0.10.5-2.fc39.ppc64le libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.ppc64le libtasn1-4.19.0-3.fc39.ppc64le libtirpc-1.3.3-1.rc2.fc39.ppc64le libunistring-1.1-5.fc40.ppc64le libutempter-1.2.1-10.fc39.ppc64le libuuid-2.39.2-1.fc40.ppc64le libverto-0.3.2-6.fc39.ppc64le libxcrypt-4.4.36-2.fc39.ppc64le libxml2-2.11.5-1.fc40.ppc64le libzstd-1.5.5-4.fc40.ppc64le lua-libs-5.4.6-3.fc39.ppc64le lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.ppc64le mpfr-4.2.0-3.fc39.ppc64le ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.ppc64le ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.ppc64le openssl-libs-1:3.1.1-4.fc40.ppc64le p11-kit-0.25.0-2.fc39.ppc64le p11-kit-trust-0.25.0-2.fc39.ppc64le package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.ppc64le pam-libs-1.5.3-2.fc39.ppc64le patch-2.7.6-22.fc39.ppc64le pcre2-10.42-1.fc39.2.ppc64le pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.ppc64le pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.ppc64le popt-1.19-3.fc39.ppc64le publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.ppc64le redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.ppc64le rpm-build-4.18.99-1.fc40.ppc64le rpm-build-libs-4.18.99-1.fc40.ppc64le rpm-libs-4.18.99-1.fc40.ppc64le rpm-sequoia-1.5.0-1.fc40.ppc64le rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.ppc64le setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.ppc64le sqlite-libs-3.43.1-1.fc40.ppc64le systemd-libs-254.1-2.fc40.ppc64le tar-2:1.35-2.fc40.ppc64le tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.ppc64le util-linux-2.39.2-1.fc40.ppc64le util-linux-core-2.39.2-1.fc40.ppc64le which-2.21-40.fc39.ppc64le xxhash-libs-0.8.2-1.fc39.ppc64le xz-5.4.4-1.fc39.ppc64le xz-libs-5.4.4-1.fc39.ppc64le zip-3.0-38.fc39.ppc64le zlib-ng-compat-2.1.3-3.fc40.ppc64le zstd-1.5.5-4.fc40.ppc64le Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.ppc64le ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.ppc64le authselect-1.4.2-3.fc39.ppc64le authselect-libs-1.4.2-3.fc39.ppc64le basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.ppc64le binutils-2.41-5.fc40.ppc64le binutils-gold-2.41-5.fc40.ppc64le bzip2-1.0.8-16.fc39.ppc64le bzip2-libs-1.0.8-16.fc39.ppc64le ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.ppc64le coreutils-common-9.4-1.fc40.ppc64le cpio-2.14-4.fc39.ppc64le cracklib-2.9.11-2.fc40.ppc64le crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.ppc64le cyrus-sasl-lib-2.1.28-11.fc39.ppc64le debugedit-5.0-10.fc39.ppc64le diffutils-3.10-3.fc39.ppc64le dwz-0.15-3.fc39.ppc64le ed-1.19-4.fc39.ppc64le efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.ppc64le elfutils-debuginfod-client-0.189-6.fc40.ppc64le elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.ppc64le elfutils-libs-0.189-6.fc40.ppc64le fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.ppc64le file-libs-5.45-1.fc40.ppc64le filesystem-3.18-6.fc39.ppc64le findutils-4.9.0-6.fc40.ppc64le fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.ppc64le gdb-minimal-13.2-8.fc40.ppc64le gdbm-libs-1.23-4.fc39.ppc64le ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.ppc64le glibc-common-2.38.9000-8.fc40.ppc64le glibc-gconv-extra-2.38.9000-8.fc40.ppc64le glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le gmp-6.2.1-5.fc39.ppc64le gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.ppc64le gzip-1.12-6.fc39.ppc64le info-7.0.3-3.fc39.ppc64le jansson-2.13.1-7.fc39.ppc64le kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.ppc64le krb5-libs-1.21.2-1.fc40.ppc64le libacl-2.3.1-9.fc40.ppc64le libarchive-3.7.2-1.fc40.ppc64le libattr-2.5.1-9.fc40.ppc64le libblkid-2.39.2-1.fc40.ppc64le libbrotli-1.1.0-1.fc40.ppc64le libcap-2.48-7.fc39.ppc64le libcap-ng-0.8.3-8.fc40.ppc64le libcom_err-1.47.0-2.fc39.ppc64le libcurl-8.3.0-1.fc40.ppc64le libdb-5.3.28-58.fc40.ppc64le libeconf-0.5.2-1.fc40.ppc64le libevent-2.1.12-9.fc39.ppc64le libfdisk-2.39.2-1.fc40.ppc64le libffi-3.4.4-4.fc39.ppc64le libgcc-13.2.1-1.fc39.ppc64le libgomp-13.2.1-1.fc39.ppc64le libidn2-2.3.4-3.fc39.ppc64le libmount-2.39.2-1.fc40.ppc64le libnghttp2-1.56.0-1.fc40.ppc64le libnsl2-2.0.0-6.fc39.ppc64le libpkgconf-1.9.5-2.fc39.ppc64le libpsl-0.21.2-4.fc39.ppc64le libpwquality-1.4.5-6.fc39.ppc64le librtas-2.0.4-3.fc39.ppc64le libselinux-3.5-5.fc39.ppc64le libsemanage-3.5-4.fc39.ppc64le libsepol-3.5-2.fc39.ppc64le libsigsegv-2.14-5.fc39.ppc64le libsmartcols-2.39.2-1.fc40.ppc64le libssh-0.10.5-2.fc39.ppc64le libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.ppc64le libtasn1-4.19.0-3.fc39.ppc64le libtirpc-1.3.3-1.rc2.fc39.ppc64le libunistring-1.1-5.fc40.ppc64le libutempter-1.2.1-10.fc39.ppc64le libuuid-2.39.2-1.fc40.ppc64le libverto-0.3.2-6.fc39.ppc64le libxcrypt-4.4.36-2.fc39.ppc64le libxml2-2.11.5-1.fc40.ppc64le libzstd-1.5.5-4.fc40.ppc64le lua-libs-5.4.6-3.fc39.ppc64le lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.ppc64le mpfr-4.2.0-3.fc39.ppc64le ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.ppc64le ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.ppc64le openssl-libs-3.1.1-4.fc40.ppc64le p11-kit-0.25.0-2.fc39.ppc64le p11-kit-trust-0.25.0-2.fc39.ppc64le package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.ppc64le pam-libs-1.5.3-2.fc39.ppc64le patch-2.7.6-22.fc39.ppc64le pcre2-10.42-1.fc39.2.ppc64le pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.ppc64le pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.ppc64le popt-1.19-3.fc39.ppc64le publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.ppc64le redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.ppc64le rpm-build-4.18.99-1.fc40.ppc64le rpm-build-libs-4.18.99-1.fc40.ppc64le rpm-libs-4.18.99-1.fc40.ppc64le rpm-sequoia-1.5.0-1.fc40.ppc64le rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.ppc64le setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.ppc64le sqlite-libs-3.43.1-1.fc40.ppc64le systemd-libs-254.1-2.fc40.ppc64le tar-1.35-2.fc40.ppc64le tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.ppc64le util-linux-2.39.2-1.fc40.ppc64le util-linux-core-2.39.2-1.fc40.ppc64le which-2.21-40.fc39.ppc64le xxhash-libs-0.8.2-1.fc39.ppc64le xz-5.4.4-1.fc39.ppc64le xz-libs-5.4.4-1.fc39.ppc64le zip-3.0-38.fc39.ppc64le zlib-ng-compat-2.1.3-3.fc40.ppc64le zstd-1.5.5-4.fc40.ppc64le Start: buildsrpm Start: rpmbuild -bs Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1693872000 Wrote: /builddir/build/SRPMS/python-pysam-0.21.0-2.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-3bclfrbo/python-pysam/python-pysam.spec) Config(child) 3 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-pysam-0.21.0-2.fc40.src.rpm) Config(fedora-rawhide-ppc64le) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1694963795.467607/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1694963795.467607/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.ppc64le rpm-sequoia-1.5.0-1.fc40.ppc64le python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for python-pysam-0.21.0-2.fc40.src.rpm Start: build setup for python-pysam-0.21.0-2.fc40.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1693872000 Wrote: /builddir/build/SRPMS/python-pysam-0.21.0-2.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 10 kB/s | 1.5 kB 00:00 Copr repository 3.7 MB/s | 1.4 MB 00:00 fedora 28 kB/s | 5.6 kB 00:00 Last metadata expiration check: 0:00:01 ago on Sun Sep 17 15:20:35 2023. Dependencies resolved. ========================================================================================== Package Arch Version Repo Size ========================================================================================== Installing: bzip2-devel ppc64le 1.0.8-16.fc39 fedora 214 k gcc ppc64le 13.2.1-1.fc39 fedora 31 M python3-cython ppc64le 3.0.2-1.fc40 fedora 3.8 M python3-devel ppc64le 3.12.0~rc2-1.fc40 fedora 311 k python3-setuptools noarch 67.7.2-7.fc40 fedora 1.5 M python3-sphinx noarch 1:7.1.2-1.fc40 fedora 2.6 M xz-devel ppc64le 5.4.4-1.fc39 fedora 66 k zlib-ng-compat-devel ppc64le 2.1.3-3.fc40 copr_base 34 k Installing dependencies: annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc ppc64le 12.26-1.fc40 fedora 961 k cpp ppc64le 13.2.1-1.fc39 fedora 9.8 M expat ppc64le 2.5.0-3.fc39 fedora 116 k gc ppc64le 8.2.2-4.fc39 fedora 122 k gcc-plugin-annobin ppc64le 13.2.1-1.fc39 fedora 49 k glibc-devel ppc64le 2.38.9000-8.fc40 copr_base 515 k guile22 ppc64le 2.2.7-9.fc39 fedora 6.6 M kernel-headers ppc64le 6.6.0-0.rc1.git0.1.fc40 fedora 1.5 M libasan ppc64le 13.2.1-1.fc39 fedora 493 k libatomic ppc64le 13.2.1-1.fc39 fedora 35 k libb2 ppc64le 0.98.1-9.fc39 fedora 25 k libmpc ppc64le 1.3.1-3.fc39 fedora 95 k libtool-ltdl ppc64le 2.4.7-8.fc40 fedora 40 k libubsan ppc64le 13.2.1-1.fc39 fedora 250 k libxcrypt-devel ppc64le 4.4.36-2.fc39 fedora 30 k make ppc64le 1:4.4.1-2.fc39 fedora 604 k mpdecimal ppc64le 2.5.1-7.fc39 fedora 104 k pyproject-rpm-macros noarch 1.9.0-2.fc39 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 ppc64le 3.12.0~rc2-1.fc40 fedora 26 k python3-babel noarch 2.12.1-4.fc39~bootstrap fedora 6.9 M python3-charset-normalizer noarch 3.2.0-2.fc39 fedora 105 k python3-docutils noarch 0.20.1-1.fc40 fedora 1.0 M python3-idna noarch 3.4-5.fc40 fedora 109 k python3-imagesize noarch 1.4.1-5.fc40 fedora 22 k python3-jinja2 noarch 3.1.2-6.fc40 fedora 505 k python3-libs ppc64le 3.12.0~rc2-1.fc40 fedora 9.3 M python3-markupsafe ppc64le 2.1.3-2.fc39 fedora 31 k python3-packaging noarch 23.1-5.fc40 fedora 115 k python3-pygments noarch 2.16.1-1.fc40 fedora 2.4 M python3-pysocks noarch 1.7.1-20.fc39 fedora 39 k python3-requests noarch 2.28.2-6.fc40 fedora 151 k python3-rpm-generators noarch 14-7.fc39 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-snowballstemmer noarch 2.2.0-7.fc39 fedora 257 k python3-sphinx-theme-alabaster noarch 0.7.12-19.fc39 fedora 29 k python3-sphinxcontrib-applehelp noarch 1.0.6-1.fc40 fedora 45 k python3-sphinxcontrib-devhelp noarch 1.0.2-14.fc39 fedora 41 k python3-sphinxcontrib-htmlhelp noarch 2.0.3-1.fc40 fedora 54 k python3-sphinxcontrib-jsmath noarch 1.0.1-22.fc39 fedora 17 k python3-sphinxcontrib-qthelp noarch 1.0.3-15.fc39 fedora 47 k python3-sphinxcontrib-serializinghtml noarch 1.1.5-10.fc39 fedora 47 k python3-urllib3 noarch 1.26.16-3.fc40 fedora 273 k python3-urllib3+socks noarch 1.26.16-3.fc40 fedora 9.9 k Transaction Summary ========================================================================================== Install 54 Packages Total download size: 84 M Installed size: 327 M Downloading Packages: (1/54): zlib-ng-compat-devel-2.1.3-3.fc40.ppc64 245 kB/s | 34 kB 00:00 (2/54): glibc-devel-2.38.9000-8.fc40.ppc64le.rp 2.8 MB/s | 515 kB 00:00 (3/54): annobin-docs-12.26-1.fc40.noarch.rpm 212 kB/s | 94 kB 00:00 (4/54): bzip2-devel-1.0.8-16.fc39.ppc64le.rpm 464 kB/s | 214 kB 00:00 (5/54): expat-2.5.0-3.fc39.ppc64le.rpm 1.4 MB/s | 116 kB 00:00 (6/54): gc-8.2.2-4.fc39.ppc64le.rpm 1.9 MB/s | 122 kB 00:00 (7/54): annobin-plugin-gcc-12.26-1.fc40.ppc64le 1.1 MB/s | 961 kB 00:00 (8/54): gcc-plugin-annobin-13.2.1-1.fc39.ppc64l 1.1 MB/s | 49 kB 00:00 (9/54): guile22-2.2.7-9.fc39.ppc64le.rpm 5.3 MB/s | 6.6 MB 00:01 (10/54): cpp-13.2.1-1.fc39.ppc64le.rpm 5.1 MB/s | 9.8 MB 00:01 (11/54): libasan-13.2.1-1.fc39.ppc64le.rpm 9.2 MB/s | 493 kB 00:00 (12/54): kernel-headers-6.6.0-0.rc1.git0.1.fc40 7.0 MB/s | 1.5 MB 00:00 (13/54): libatomic-13.2.1-1.fc39.ppc64le.rpm 486 kB/s | 35 kB 00:00 (14/54): libb2-0.98.1-9.fc39.ppc64le.rpm 384 kB/s | 25 kB 00:00 (15/54): libmpc-1.3.1-3.fc39.ppc64le.rpm 1.4 MB/s | 95 kB 00:00 (16/54): libtool-ltdl-2.4.7-8.fc40.ppc64le.rpm 708 kB/s | 40 kB 00:00 (17/54): libubsan-13.2.1-1.fc39.ppc64le.rpm 4.2 MB/s | 250 kB 00:00 (18/54): libxcrypt-devel-4.4.36-2.fc39.ppc64le. 388 kB/s | 30 kB 00:00 (19/54): make-4.4.1-2.fc39.ppc64le.rpm 4.2 MB/s | 604 kB 00:00 (20/54): mpdecimal-2.5.1-7.fc39.ppc64le.rpm 1.6 MB/s | 104 kB 00:00 (21/54): pyproject-rpm-macros-1.9.0-2.fc39.noar 656 kB/s | 41 kB 00:00 (22/54): python-rpm-macros-3.12-4.fc40.noarch.r 396 kB/s | 19 kB 00:00 (23/54): python3-3.12.0~rc2-1.fc40.ppc64le.rpm 302 kB/s | 26 kB 00:00 (24/54): python-pip-wheel-23.2.1-1.fc39.noarch. 6.6 MB/s | 1.5 MB 00:00 (25/54): python3-charset-normalizer-3.2.0-2.fc3 1.3 MB/s | 105 kB 00:00 (26/54): python3-cython-3.0.2-1.fc40.ppc64le.rp 11 MB/s | 3.8 MB 00:00 (27/54): python3-devel-3.12.0~rc2-1.fc40.ppc64l 5.9 MB/s | 311 kB 00:00 (28/54): python3-babel-2.12.1-4.fc39~bootstrap. 9.6 MB/s | 6.9 MB 00:00 (29/54): python3-docutils-0.20.1-1.fc40.noarch. 4.8 MB/s | 1.0 MB 00:00 (30/54): gcc-13.2.1-1.fc39.ppc64le.rpm 10 MB/s | 31 MB 00:03 (31/54): python3-idna-3.4-5.fc40.noarch.rpm 669 kB/s | 109 kB 00:00 (32/54): python3-imagesize-1.4.1-5.fc40.noarch. 140 kB/s | 22 kB 00:00 (33/54): python3-jinja2-3.1.2-6.fc40.noarch.rpm 8.4 MB/s | 505 kB 00:00 (34/54): python3-markupsafe-2.1.3-2.fc39.ppc64l 523 kB/s | 31 kB 00:00 (35/54): python3-packaging-23.1-5.fc40.noarch.r 2.7 MB/s | 115 kB 00:00 (36/54): python3-pysocks-1.7.1-20.fc39.noarch.r 886 kB/s | 39 kB 00:00 (37/54): python3-pygments-2.16.1-1.fc40.noarch. 23 MB/s | 2.4 MB 00:00 (38/54): python3-requests-2.28.2-6.fc40.noarch. 3.3 MB/s | 151 kB 00:00 (39/54): python3-rpm-generators-14-7.fc39.noarc 774 kB/s | 30 kB 00:00 (40/54): python3-rpm-macros-3.12-4.fc40.noarch. 299 kB/s | 14 kB 00:00 (41/54): python3-setuptools-67.7.2-7.fc40.noarc 20 MB/s | 1.5 MB 00:00 (42/54): python3-snowballstemmer-2.2.0-7.fc39.n 1.7 MB/s | 257 kB 00:00 (43/54): python3-sphinx-7.1.2-1.fc40.noarch.rpm 19 MB/s | 2.6 MB 00:00 (44/54): python3-sphinx-theme-alabaster-0.7.12- 657 kB/s | 29 kB 00:00 (45/54): python3-sphinxcontrib-applehelp-1.0.6- 1.1 MB/s | 45 kB 00:00 (46/54): python3-libs-3.12.0~rc2-1.fc40.ppc64le 17 MB/s | 9.3 MB 00:00 (47/54): python3-sphinxcontrib-devhelp-1.0.2-14 417 kB/s | 41 kB 00:00 (48/54): python3-sphinxcontrib-htmlhelp-2.0.3-1 725 kB/s | 54 kB 00:00 (49/54): python3-sphinxcontrib-jsmath-1.0.1-22. 222 kB/s | 17 kB 00:00 (50/54): python3-sphinxcontrib-qthelp-1.0.3-15. 603 kB/s | 47 kB 00:00 (51/54): python3-sphinxcontrib-serializinghtml- 607 kB/s | 47 kB 00:00 (52/54): python3-urllib3+socks-1.26.16-3.fc40.n 170 kB/s | 9.9 kB 00:00 (53/54): python3-urllib3-1.26.16-3.fc40.noarch. 4.5 MB/s | 273 kB 00:00 (54/54): xz-devel-5.4.4-1.fc39.ppc64le.rpm 1.1 MB/s | 66 kB 00:00 -------------------------------------------------------------------------------- Total 18 MB/s | 84 MB 00:04 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python-rpm-macros-3.12-4.fc40.noarch 1/54 Installing : python3-rpm-macros-3.12-4.fc40.noarch 2/54 Installing : libmpc-1.3.1-3.fc39.ppc64le 3/54 Installing : cpp-13.2.1-1.fc39.ppc64le 4/54 Installing : pyproject-rpm-macros-1.9.0-2.fc39.noarch 5/54 Installing : python-pip-wheel-23.2.1-1.fc39.noarch 6/54 Installing : mpdecimal-2.5.1-7.fc39.ppc64le 7/54 Installing : libubsan-13.2.1-1.fc39.ppc64le 8/54 Installing : libtool-ltdl-2.4.7-8.fc40.ppc64le 9/54 Installing : libb2-0.98.1-9.fc39.ppc64le 10/54 Installing : libatomic-13.2.1-1.fc39.ppc64le 11/54 Installing : libasan-13.2.1-1.fc39.ppc64le 12/54 Installing : kernel-headers-6.6.0-0.rc1.git0.1.fc40.ppc64le 13/54 Installing : libxcrypt-devel-4.4.36-2.fc39.ppc64le 14/54 Installing : glibc-devel-2.38.9000-8.fc40.ppc64le 15/54 Installing : gc-8.2.2-4.fc39.ppc64le 16/54 Installing : guile22-2.2.7-9.fc39.ppc64le 17/54 Installing : make-1:4.4.1-2.fc39.ppc64le 18/54 Installing : gcc-13.2.1-1.fc39.ppc64le 19/54 Running scriptlet: gcc-13.2.1-1.fc39.ppc64le 19/54 Installing : expat-2.5.0-3.fc39.ppc64le 20/54 Installing : python3-3.12.0~rc2-1.fc40.ppc64le 21/54 Installing : python3-libs-3.12.0~rc2-1.fc40.ppc64le 22/54 Installing : python3-idna-3.4-5.fc40.noarch 23/54 Installing : python3-packaging-23.1-5.fc40.noarch 24/54 Installing : python3-rpm-generators-14-7.fc39.noarch 25/54 Installing : python3-babel-2.12.1-4.fc39~bootstrap.noarch 26/54 Installing : python3-charset-normalizer-3.2.0-2.fc39.noarch 27/54 Installing : python3-docutils-0.20.1-1.fc40.noarch 28/54 Installing : python3-imagesize-1.4.1-5.fc40.noarch 29/54 Installing : python3-markupsafe-2.1.3-2.fc39.ppc64le 30/54 Installing : python3-jinja2-3.1.2-6.fc40.noarch 31/54 Installing : python3-pygments-2.16.1-1.fc40.noarch 32/54 Installing : python3-pysocks-1.7.1-20.fc39.noarch 33/54 Installing : python3-urllib3+socks-1.26.16-3.fc40.noarch 34/54 Installing : python3-urllib3-1.26.16-3.fc40.noarch 35/54 Installing : python3-requests-2.28.2-6.fc40.noarch 36/54 Installing : python3-snowballstemmer-2.2.0-7.fc39.noarch 37/54 Installing : python3-sphinx-theme-alabaster-0.7.12-19.fc39.noar 38/54 Installing : python3-sphinxcontrib-devhelp-1.0.2-14.fc39.noarch 39/54 Installing : python3-sphinxcontrib-jsmath-1.0.1-22.fc39.noarch 40/54 Installing : python3-sphinxcontrib-qthelp-1.0.3-15.fc39.noarch 41/54 Installing : python3-sphinxcontrib-serializinghtml-1.1.5-10.fc3 42/54 Installing : python3-sphinxcontrib-applehelp-1.0.6-1.fc40.noarc 43/54 Installing : python3-sphinxcontrib-htmlhelp-2.0.3-1.fc40.noarch 44/54 Installing : python3-sphinx-1:7.1.2-1.fc40.noarch 45/54 Installing : annobin-docs-12.26-1.fc40.noarch 46/54 Installing : annobin-plugin-gcc-12.26-1.fc40.ppc64le 47/54 Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.ppc64le 47/54 Installing : python3-devel-3.12.0~rc2-1.fc40.ppc64le 48/54 Installing : python3-cython-3.0.2-1.fc40.ppc64le 49/54 Installing : python3-setuptools-67.7.2-7.fc40.noarch 50/54 Installing : gcc-plugin-annobin-13.2.1-1.fc39.ppc64le 51/54 Running scriptlet: gcc-plugin-annobin-13.2.1-1.fc39.ppc64le 51/54 Installing : xz-devel-5.4.4-1.fc39.ppc64le 52/54 Installing : bzip2-devel-1.0.8-16.fc39.ppc64le 53/54 Installing : zlib-ng-compat-devel-2.1.3-3.fc40.ppc64le 54/54 Running scriptlet: zlib-ng-compat-devel-2.1.3-3.fc40.ppc64le 54/54 Verifying : glibc-devel-2.38.9000-8.fc40.ppc64le 1/54 Verifying : zlib-ng-compat-devel-2.1.3-3.fc40.ppc64le 2/54 Verifying : annobin-docs-12.26-1.fc40.noarch 3/54 Verifying : annobin-plugin-gcc-12.26-1.fc40.ppc64le 4/54 Verifying : bzip2-devel-1.0.8-16.fc39.ppc64le 5/54 Verifying : cpp-13.2.1-1.fc39.ppc64le 6/54 Verifying : expat-2.5.0-3.fc39.ppc64le 7/54 Verifying : gc-8.2.2-4.fc39.ppc64le 8/54 Verifying : gcc-13.2.1-1.fc39.ppc64le 9/54 Verifying : gcc-plugin-annobin-13.2.1-1.fc39.ppc64le 10/54 Verifying : guile22-2.2.7-9.fc39.ppc64le 11/54 Verifying : kernel-headers-6.6.0-0.rc1.git0.1.fc40.ppc64le 12/54 Verifying : libasan-13.2.1-1.fc39.ppc64le 13/54 Verifying : libatomic-13.2.1-1.fc39.ppc64le 14/54 Verifying : libb2-0.98.1-9.fc39.ppc64le 15/54 Verifying : libmpc-1.3.1-3.fc39.ppc64le 16/54 Verifying : libtool-ltdl-2.4.7-8.fc40.ppc64le 17/54 Verifying : libubsan-13.2.1-1.fc39.ppc64le 18/54 Verifying : libxcrypt-devel-4.4.36-2.fc39.ppc64le 19/54 Verifying : make-1:4.4.1-2.fc39.ppc64le 20/54 Verifying : mpdecimal-2.5.1-7.fc39.ppc64le 21/54 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 22/54 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 23/54 Verifying : python-rpm-macros-3.12-4.fc40.noarch 24/54 Verifying : python3-3.12.0~rc2-1.fc40.ppc64le 25/54 Verifying : python3-babel-2.12.1-4.fc39~bootstrap.noarch 26/54 Verifying : python3-charset-normalizer-3.2.0-2.fc39.noarch 27/54 Verifying : python3-cython-3.0.2-1.fc40.ppc64le 28/54 Verifying : python3-devel-3.12.0~rc2-1.fc40.ppc64le 29/54 Verifying : python3-docutils-0.20.1-1.fc40.noarch 30/54 Verifying : python3-idna-3.4-5.fc40.noarch 31/54 Verifying : python3-imagesize-1.4.1-5.fc40.noarch 32/54 Verifying : python3-jinja2-3.1.2-6.fc40.noarch 33/54 Verifying : python3-libs-3.12.0~rc2-1.fc40.ppc64le 34/54 Verifying : python3-markupsafe-2.1.3-2.fc39.ppc64le 35/54 Verifying : python3-packaging-23.1-5.fc40.noarch 36/54 Verifying : python3-pygments-2.16.1-1.fc40.noarch 37/54 Verifying : python3-pysocks-1.7.1-20.fc39.noarch 38/54 Verifying : python3-requests-2.28.2-6.fc40.noarch 39/54 Verifying : python3-rpm-generators-14-7.fc39.noarch 40/54 Verifying : python3-rpm-macros-3.12-4.fc40.noarch 41/54 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 42/54 Verifying : python3-snowballstemmer-2.2.0-7.fc39.noarch 43/54 Verifying : python3-sphinx-1:7.1.2-1.fc40.noarch 44/54 Verifying : python3-sphinx-theme-alabaster-0.7.12-19.fc39.noar 45/54 Verifying : python3-sphinxcontrib-applehelp-1.0.6-1.fc40.noarc 46/54 Verifying : python3-sphinxcontrib-devhelp-1.0.2-14.fc39.noarch 47/54 Verifying : python3-sphinxcontrib-htmlhelp-2.0.3-1.fc40.noarch 48/54 Verifying : python3-sphinxcontrib-jsmath-1.0.1-22.fc39.noarch 49/54 Verifying : python3-sphinxcontrib-qthelp-1.0.3-15.fc39.noarch 50/54 Verifying : python3-sphinxcontrib-serializinghtml-1.1.5-10.fc3 51/54 Verifying : python3-urllib3+socks-1.26.16-3.fc40.noarch 52/54 Verifying : python3-urllib3-1.26.16-3.fc40.noarch 53/54 Verifying : xz-devel-5.4.4-1.fc39.ppc64le 54/54 Installed: annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.ppc64le bzip2-devel-1.0.8-16.fc39.ppc64le cpp-13.2.1-1.fc39.ppc64le expat-2.5.0-3.fc39.ppc64le gc-8.2.2-4.fc39.ppc64le gcc-13.2.1-1.fc39.ppc64le gcc-plugin-annobin-13.2.1-1.fc39.ppc64le glibc-devel-2.38.9000-8.fc40.ppc64le guile22-2.2.7-9.fc39.ppc64le kernel-headers-6.6.0-0.rc1.git0.1.fc40.ppc64le libasan-13.2.1-1.fc39.ppc64le libatomic-13.2.1-1.fc39.ppc64le libb2-0.98.1-9.fc39.ppc64le libmpc-1.3.1-3.fc39.ppc64le libtool-ltdl-2.4.7-8.fc40.ppc64le libubsan-13.2.1-1.fc39.ppc64le libxcrypt-devel-4.4.36-2.fc39.ppc64le make-1:4.4.1-2.fc39.ppc64le mpdecimal-2.5.1-7.fc39.ppc64le pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0~rc2-1.fc40.ppc64le python3-babel-2.12.1-4.fc39~bootstrap.noarch python3-charset-normalizer-3.2.0-2.fc39.noarch python3-cython-3.0.2-1.fc40.ppc64le python3-devel-3.12.0~rc2-1.fc40.ppc64le python3-docutils-0.20.1-1.fc40.noarch python3-idna-3.4-5.fc40.noarch python3-imagesize-1.4.1-5.fc40.noarch python3-jinja2-3.1.2-6.fc40.noarch python3-libs-3.12.0~rc2-1.fc40.ppc64le python3-markupsafe-2.1.3-2.fc39.ppc64le python3-packaging-23.1-5.fc40.noarch python3-pygments-2.16.1-1.fc40.noarch python3-pysocks-1.7.1-20.fc39.noarch python3-requests-2.28.2-6.fc40.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-setuptools-67.7.2-7.fc40.noarch python3-snowballstemmer-2.2.0-7.fc39.noarch python3-sphinx-1:7.1.2-1.fc40.noarch python3-sphinx-theme-alabaster-0.7.12-19.fc39.noarch python3-sphinxcontrib-applehelp-1.0.6-1.fc40.noarch python3-sphinxcontrib-devhelp-1.0.2-14.fc39.noarch python3-sphinxcontrib-htmlhelp-2.0.3-1.fc40.noarch python3-sphinxcontrib-jsmath-1.0.1-22.fc39.noarch python3-sphinxcontrib-qthelp-1.0.3-15.fc39.noarch python3-sphinxcontrib-serializinghtml-1.1.5-10.fc39.noarch python3-urllib3-1.26.16-3.fc40.noarch python3-urllib3+socks-1.26.16-3.fc40.noarch xz-devel-5.4.4-1.fc39.ppc64le zlib-ng-compat-devel-2.1.3-3.fc40.ppc64le Complete! Finish: build setup for python-pysam-0.21.0-2.fc40.src.rpm Start: rpmbuild python-pysam-0.21.0-2.fc40.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1693872000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4ktNrY + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pysam-0.21.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysam-0.21.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pysam-0.21.0 + rm -rf /builddir/build/BUILD/pysam-0.21.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pysam-0.21.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf pysam.egg-info ++ grep -rl '/\* Generated by Cython' Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YlG0cD + rm pysam/libcvcf.c pysam/libcutils.c pysam/libctabixproxies.c pysam/libctabix.c pysam/libcsamtools.c pysam/libcsamfile.c pysam/libchtslib.c pysam/libcfaidx.c pysam/libcbgzf.c pysam/libcbcftools.c pysam/libcbcf.c pysam/libcalignmentfile.c pysam/libcalignedsegment.c + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.21.0 + FORCE_CYTHON=1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' /builddir/build/BUILD/pysam-0.21.0/setup.py:435: SyntaxWarning: invalid escape sequence '\S' "#define (\S+)\s+(\S+)", line).groups() # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall configure: Default CFLAGS_ARM/X86: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no checking whether C compiler accepts -mavx2... no checking whether C compiler accepts -mavx512f... no checking whether C compiler supports ARM Neon... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall configure: Default CFLAGS_ARM/X86: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no checking whether C compiler accepts -mavx2... no checking whether C compiler accepts -mavx512f... no checking whether C compiler supports ARM Neon... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_bundled.mk to htscodecs.mk # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config HTS_HAVE_NEON= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running build running build_py creating build creating build/lib.linux-ppc64le-cpython-312 creating build/lib.linux-ppc64le-cpython-312/pysam copying pysam/config.py -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/version.py -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/utils.py -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/samtools.py -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/bcftools.py -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/__init__.py -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/Pileup.py -> build/lib.linux-ppc64le-cpython-312/pysam creating build/lib.linux-ppc64le-cpython-312/pysam/include copying pysam/include/__init__.py -> build/lib.linux-ppc64le-cpython-312/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing requirements to pysam.egg-info/requires.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests/' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.cram' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.cram' to be distributed and are already explicitly excluding 'pysam.include.htslib.cram' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.m4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.m4' to be distributed and are already explicitly excluding 'pysam.include.htslib.m4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.os' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.os' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.os' to be distributed and are already explicitly excluding 'pysam.include.htslib.os' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/csamtools_util.h -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/htslib_util.c -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/htslib_util.h -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcalignedsegment.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcalignedsegment.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcalignedsegment.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcalignmentfile.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcalignmentfile.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcalignmentfile.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbcf.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbcf.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbcf.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbcftools.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbcftools.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbcftools.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbgzf.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcbgzf.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcfaidx.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcfaidx.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcfaidx.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libchtslib.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libchtslib.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libchtslib.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcsamfile.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcsamfile.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcsamfile.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcsamtools.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcsamtools.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcsamtools.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libctabix.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libctabix.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libctabix.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libctabixproxies.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libctabixproxies.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libctabixproxies.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcutils.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcutils.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcutils.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcvcf.pxd -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcvcf.pyi -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/libcvcf.pyx -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/py.typed -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/pysam_stream.h -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/pysam_util.c -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/pysam_util.h -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/version.h -> build/lib.linux-ppc64le-cpython-312/pysam copying pysam/version.pyi -> build/lib.linux-ppc64le-cpython-312/pysam creating build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/LICENSE -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/README -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/amplicon_stats.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam2depth.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_addrprg.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_ampliconclip.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_ampliconclip.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_aux.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_cat.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_color.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_consensus.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_fastq.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_flags.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_import.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_index.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_lpileup.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_lpileup.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_markdup.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_mate.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_md.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_plbuf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_plbuf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_plcmd.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_quickcheck.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_reheader.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_rmdup.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_rmdupse.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_samples.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_sort.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_split.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_stat.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bamshuf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bamtk.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bedcov.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bedidx.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/bedidx.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/consensus_pileup.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/consensus_pileup.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/coverage.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/coverage.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/cram_size.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/cut_target.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/dict.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/dict.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/faidx.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/faidx.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/padding.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/padding.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/phase.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/phase.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/reference.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/reference.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/reset.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/reset.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_opts.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_opts.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_utils.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_utils.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_view.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sample.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sample.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/sample.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/samtools.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/samtools.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/samtools.pysam.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/splaysort.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/stats.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/stats.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/stats_isize.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/stats_isize.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/tmp_file.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/tmp_file.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools copying samtools/version.sh -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools creating build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4 copying samtools/config.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/samtools creating build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/HMM.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/HMM.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/LICENSE -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/README -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/abuf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/abuf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam_sample.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bam_sample.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bcftools.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bin.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/bin.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/call.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/ccall.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/cigar_state.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/cols.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/cols.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/consensus.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/convert.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/convert.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/csq.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/dbuf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/dist.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/dist.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/em.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/em.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/extsort.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/extsort.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/filter.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/filter.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/gvcf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/gvcf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/hclust.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/hclust.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/hex.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/khash_str2str.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/kheap.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/kmin.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/kmin.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/main.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/main.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/mcall.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/mpileup.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/mw.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/ploidy.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/ploidy.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/prob1.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/prob1.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/rbuf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/read_consensus.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/read_consensus.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/regidx.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/regidx.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/reheader.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/smpl_ilist.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/smpl_ilist.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/str_finder.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/str_finder.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/tabix.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/tsv2vcf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/tsv2vcf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/utlist.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/variantkey.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfannotate.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfbuf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfbuf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfcall.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfcnv.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfconcat.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfconvert.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcffilter.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfhead.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfindex.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfisec.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfmerge.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfnorm.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfplugin.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfquery.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfroh.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfsom.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfsort.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfstats.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfview.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcmp.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/vcmp.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/version.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/version.c.pysam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/version.sh -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools copying bcftools/config.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/LICENSE -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/Makefile -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/README -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/bcf_sr_sort.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/bcf_sr_sort.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/bgzf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/bgzip.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/builddir_vars.mk.in -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/config.h.in -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/config.mk.in -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/configure -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/configure.ac -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/errmod.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/faidx.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/header.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/header.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hfile.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hfile_gcs.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hfile_internal.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hfile_libcurl.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hfile_s3.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hfile_s3_write.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hts.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hts_expr.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hts_internal.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hts_os.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/hts_time_funcs.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/htscodecs_bundled.mk -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/htscodecs_external.mk -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/htsfile.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/htslib.mk -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/htslib.pc.in -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/htslib_vars.mk -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/kfunc.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/kstring.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/md5.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/multipart.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/plugin.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/probaln.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/realn.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/regidx.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/region.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/sam.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/sam_internal.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/synced_bcf_reader.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/tabix.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/tbx.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/textutils.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/textutils_internal.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/thread_pool.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/thread_pool_internal.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/vcf.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/vcf_sweep.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/vcfutils.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib copying htslib/version.sh -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_codecs.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_codecs.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_decode.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_decode.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_encode.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_encode.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_external.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_index.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_index.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_io.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_io.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_samtools.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_stats.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_stats.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/cram_structs.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/mFILE.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/mFILE.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/misc.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/open_trace_file.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/open_trace_file.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/os.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/string_alloc.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram copying htslib/cram/string_alloc.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4 copying htslib/m4/ax_check_compile_flag.m4 -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4 copying htslib/m4/pkg.m4 -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4 creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/os copying htslib/os/lzma_stub.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/os copying htslib/os/rand.c -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/os copying htslib/config.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib creating build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/bgzf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/cram.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/faidx.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hfile.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hts.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hts_defs.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hts_endian.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hts_expr.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hts_log.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/hts_os.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/kbitset.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/kfunc.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/khash.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/khash_str2int.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/klist.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/knetfile.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/kroundup.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/kseq.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/ksort.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/kstring.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/regidx.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/sam.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/tbx.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/thread_pool.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/vcf.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/vcf_sweep.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib copying htslib/htslib/vcfutils.h -> build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib running build_ext creating htslib/config_vars.h for 'pysam.libchtslib' extension building 'libhts.a' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.17"' > version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o ranlib libhts.a warning: pysam/libchtslib.pyx:39:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 warning: pysam/libchtslib.pyx:40:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 warning: pysam/libchtslib.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension creating build/temp.linux-ppc64le-cpython-312 creating build/temp.linux-ppc64le-cpython-312/pysam gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/htslib_util.c -o build/temp.linux-ppc64le-cpython-312/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libchtslib.c -o build/temp.linux-ppc64le-cpython-312/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/htslib_util.o build/temp.linux-ppc64le-cpython-312/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -o build/lib.linux-ppc64le-cpython-312/pysam/libchtslib.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-ppc64le-cpython-312/samtools creating build/temp.linux-ppc64le-cpython-312/samtools/lz4 gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcsamtools.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_color.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_import.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_index.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_md.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/bam_sort.c.pysam.c: In function ‘reverse_complement.isra.0’: samtools/bam_sort.c.pysam.c:2533:16: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2533 | seq[j] = comp[tmp]; | ~~~~~~~^~~~~~~~~~~ samtools/bam_sort.c.pysam.c:2520:10: note: at offset 2147483647 into destination object ‘seq_’ of size 10000 2520 | char seq_[10000], *seq = seq_; | ^~~~ gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_split.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bamtk.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bedcov.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/bedidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/coverage.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/cram_size.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/cut_target.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/dict.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/faidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/lz4/lz4.c -o build/temp.linux-ppc64le-cpython-312/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/padding.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/phase.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/reference.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/reset.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/sam_view.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/sample.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/samtools.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/stats.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcsamtools.o build/temp.linux-ppc64le-cpython-312/samtools/amplicon_stats.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam2depth.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_addrprg.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_aux.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_cat.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_color.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_consensus.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_fastq.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_flags.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_import.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_index.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_lpileup.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_markdup.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_mate.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_md.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_plbuf.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_plcmd.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_quickcheck.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_reheader.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_rmdup.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_rmdupse.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_samples.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_sort.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_split.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bam_stat.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bamshuf.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bamtk.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bedcov.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/bedidx.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/consensus_pileup.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/coverage.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/cram_size.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/cut_target.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/dict.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/faidx.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/lz4/lz4.o build/temp.linux-ppc64le-cpython-312/samtools/padding.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/phase.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/reference.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/reset.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/sam_opts.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/sam_utils.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/sam_view.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/sample.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/samtools.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/stats.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/stats_isize.c.pysam.o build/temp.linux-ppc64le-cpython-312/samtools/tmp_file.c.pysam.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcsamtools.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN samtools/bam_sort.c.pysam.c: In function ‘reverse_complement.isra’: samtools/bam_sort.c.pysam.c:2533:16: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2533 | seq[j] = comp[tmp]; | ^ samtools/bam_sort.c.pysam.c:2520:10: note: at offset 2147483647 into destination object ‘seq_’ of size 10000 2520 | char seq_[10000], *seq = seq_; | ^ Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-ppc64le-cpython-312/bcftools gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/HMM.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/abuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/bcftools.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/bin.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/ccall.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/cols.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/convert.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/csq.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/dist.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/em.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/extsort.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/filter.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/hclust.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/kmin.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/main.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/mcall.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/prob1.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/regidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/reheader.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/tabix.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: bcftools/vcfmerge.c.pysam.c:751:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 751 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/pysam-0.21.0/htslib/htslib/kstring.h:30, from /builddir/build/BUILD/pysam-0.21.0/htslib/htslib/hts.h:37, from /builddir/build/BUILD/pysam-0.21.0/htslib/htslib/vcf.h:39, from bcftools/vcfmerge.c.pysam.c:35: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c bcftools/version.c.pysam.c -o build/temp.linux-ppc64le-cpython-312/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcbcftools.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/bcftools/HMM.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/abuf.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/bam2bcf.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/bam_sample.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/bcftools.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/bin.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/ccall.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/cols.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/consensus.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/convert.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/csq.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/dist.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/em.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/extsort.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/filter.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/gvcf.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/hclust.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/kmin.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/main.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/mcall.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/mpileup.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/ploidy.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/prob1.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/read_consensus.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/regidx.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/reheader.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/smpl_ilist.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/str_finder.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/tabix.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/tsv2vcf.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfannotate.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfbuf.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfcall.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfcnv.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfconcat.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfconvert.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcffilter.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfhead.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfindex.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfisec.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfmerge.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfnorm.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfplugin.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfquery.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfroh.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfsom.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfsort.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfstats.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcfview.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/vcmp.c.pysam.o build/temp.linux-ppc64le-cpython-312/bcftools/version.c.pysam.o build/temp.linux-ppc64le-cpython-312/pysam/libcbcftools.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcbcftools.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: bcftools/vcfmerge.c.pysam.c:751:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 751 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcutils.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/pysam_util.c -o build/temp.linux-ppc64le-cpython-312/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcutils.o build/temp.linux-ppc64le-cpython-312/pysam/pysam_util.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcsamtools.cpython-312-powerpc64le-linux-gnu -lcbcftools.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcutils.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2572:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2577:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2582:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2621:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2626:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2631:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcalignmentfile.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’: pysam/libcalignmentfile.c:20430:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20430 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’: pysam/libcalignmentfile.c:37151:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37151 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcalignmentfile.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcalignmentfile.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcsamfile.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcsamfile.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcsamfile.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcalignedsegment.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignedsegment.c: In function ‘__pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_18fromstring’: pysam/libcalignedsegment.c:35814:10: warning: ignoring return value of ‘sam_parse1’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 35814 | (void)(sam_parse1((&__pyx_v_line), __pyx_v_dest->header->ptr, __pyx_v_dest->_delegate)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcalignedsegment.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcalignedsegment.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libctabix.c -o build/temp.linux-ppc64le-cpython-312/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libctabix.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libctabix.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcfaidx.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcfaidx.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcfaidx.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcbcf.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’: pysam/libcbcf.c:86755:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86755 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’: pysam/libcbcf.c:81419:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81419 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’: pysam/libcbcf.c:44519:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44519 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c:44545:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44545 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’: pysam/libcbcf.c:81103:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81103 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcbcf.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcbcf.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcbgzf.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcbgzf.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcbgzf.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libctabixproxies.c -o build/temp.linux-ppc64le-cpython-312/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libctabixproxies.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libctabixproxies.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/pysam-0.21.0/pysam -I/builddir/build/BUILD/pysam-0.21.0/htslib -I/builddir/build/BUILD/pysam-0.21.0/samtools -I/builddir/build/BUILD/pysam-0.21.0/samtools/lz4 -I/builddir/build/BUILD/pysam-0.21.0/bcftools -I/builddir/build/BUILD/pysam-0.21.0 -I/usr/include/python3.12 -c pysam/libcvcf.c -o build/temp.linux-ppc64le-cpython-312/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.isra.0’: pysam/libcvcf.c:29574:16: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 29574 | __pyx_t_11 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 873, __pyx_L1_error) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcvcf.c:24723:10: note: ‘__pyx_v_qual’ was declared here 24723 | double __pyx_v_qual; | ^~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-312/pysam/libcvcf.o -L/builddir/build/BUILD/pysam-0.21.0/pysam -L/builddir/build/BUILD/pysam-0.21.0 -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -Lbuild/lib.linux-ppc64le-cpython-312/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-312-powerpc64le-linux-gnu -lcutils.cpython-312-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-312/pysam/libcvcf.cpython-312-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN ++ echo /builddir/build/BUILD/pysam-0.21.0/build/lib.linux-ppc64le-cpython-312 + PYTHONPATH=/builddir/build/BUILD/pysam-0.21.0/build/lib.linux-ppc64le-cpython-312 + sphinx-build-3 doc html Running Sphinx v7.1.2 making output directory... done [autosummary] generating autosummary for: api.rst, benchmarking.rst, developer.rst, faq.rst, glossary.rst, index.rst, installation.rst, release.rst, usage.rst loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3.12/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.12/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [100%] usage looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [100%] usage generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in html. + rm -rf html/.doctrees html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.A46QTA + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le ++ dirname /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.21.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le --prefix /usr /builddir/build/BUILD/pysam-0.21.0/setup.py:435: SyntaxWarning: invalid escape sequence '\S' "#define (\S+)\s+(\S+)", line).groups() # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall configure: Default CFLAGS_ARM/X86: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no checking whether C compiler accepts -mavx2... no checking whether C compiler accepts -mavx512f... no checking whether C compiler supports ARM Neon... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall configure: Default CFLAGS_ARM/X86: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no checking whether C compiler accepts -mavx2... no checking whether C compiler accepts -mavx512f... no checking whether C compiler supports ARM Neon... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config HTS_HAVE_NEON= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64 creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/__pycache__/version.cpython-312.pyc -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/__pycache__/config.cpython-312.pyc -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/__pycache__/samtools.cpython-312.pyc -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/__pycache__/Pileup.cpython-312.pyc -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/__pycache__/utils.cpython-312.pyc -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/__pycache__/__init__.cpython-312.pyc -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-312/pysam/libcvcf.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabixproxies.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbgzf.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcf.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcfaidx.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabix.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignedsegment.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamfile.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignmentfile.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcutils.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcftools.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamtools.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libchtslib.cpython-312-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/version.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/version.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/pysam_util.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/pysam_util.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/pysam_stream.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/py.typed -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcvcf.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcvcf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcvcf.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcutils.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcutils.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcutils.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabixproxies.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabixproxies.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabixproxies.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabix.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabix.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libctabix.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamtools.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamtools.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamtools.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamfile.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamfile.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcsamfile.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libchtslib.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libchtslib.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libchtslib.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcfaidx.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcfaidx.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcfaidx.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbgzf.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbgzf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcftools.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcftools.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcftools.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcf.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcbcf.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignmentfile.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignmentfile.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignmentfile.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignedsegment.pyx -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignedsegment.pyi -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/libcalignedsegment.pxd -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/htslib_util.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/htslib_util.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/csamtools_util.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/cbcftools_util.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/vcfutils.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/vcf_sweep.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/vcf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/thread_pool.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/tbx.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/synced_bcf_reader.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/sam.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/regidx.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/kstring.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/ksort.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/kseq.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/kroundup.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/knetfile.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/klist.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/khash_str2int.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/khash.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/kfunc.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/kbitset.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hts_os.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hts_log.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hts_expr.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hts_endian.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hts_defs.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hts.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/hfile.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/faidx.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/cram.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib/bgzf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/config.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/os copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/os/rand.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/os copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/os/lzma_stub.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/os creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4/pkg.m4 -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/m4/ax_check_compile_flag.m4 -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/m4 creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/version.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/varint.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/utils.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/utils.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rle.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rle.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/permute.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/pack.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/pack.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/htscodecs/htscodecs creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/string_alloc.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/string_alloc.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/pooled_alloc.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/pooled_alloc.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/os.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/open_trace_file.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/open_trace_file.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/misc.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/mFILE.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/mFILE.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_structs.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_stats.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_stats.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_samtools.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_io.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_io.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_index.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_index.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_external.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_encode.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_encode.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_decode.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_decode.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_codecs.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram_codecs.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/cram/cram.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/version.sh -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/vcfutils.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/vcf_sweep.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/vcf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/thread_pool_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/thread_pool.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/textutils_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/textutils.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/tbx.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/tabix.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/synced_bcf_reader.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/sam_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/sam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/region.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/regidx.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/realn.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/probaln.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/plugin.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/multipart.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/md5.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/kstring.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/kfunc.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib_vars.mk -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib.pc.in -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htslib.mk -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htsfile.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs_external.mk -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/htscodecs_bundled.mk -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hts_time_funcs.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hts_os.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hts_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hts_expr.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hts.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hfile_s3_write.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hfile_s3.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hfile_libcurl.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hfile_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hfile_gcs.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/hfile.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/header.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/header.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/faidx.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/errmod.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/configure.ac -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/configure -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/config.mk.in -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/config.h.in -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/builddir_vars.mk.in -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/bgzip.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/bgzf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/bcf_sr_sort.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/bcf_sr_sort.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/README -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/Makefile -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-312/pysam/include/htslib/LICENSE -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/htslib creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/config.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/version.sh -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/version.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/version.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcmp.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcmp.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcmp.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfview.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfview.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfstats.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfstats.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfsort.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfsort.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfsom.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfsom.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfroh.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfroh.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfquery.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfquery.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfplugin.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfplugin.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfnorm.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfnorm.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfmerge.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfmerge.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfisec.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfisec.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfindex.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfindex.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfhead.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfhead.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfgtcheck.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcffilter.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcffilter.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfconvert.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfconvert.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfconcat.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfconcat.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfcnv.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfcnv.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfcall.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfcall.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfbuf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfbuf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfannotate.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/vcfannotate.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/variantkey.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/utlist.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/tsv2vcf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/tsv2vcf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/tabix.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/tabix.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/str_finder.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/str_finder.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/str_finder.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/smpl_ilist.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/smpl_ilist.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/reheader.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/reheader.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/regidx.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/regidx.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/regidx.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/read_consensus.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/read_consensus.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/read_consensus.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/rbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/prob1.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/prob1.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/prob1.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/ploidy.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/ploidy.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/ploidy.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/mw.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/mpileup.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/mpileup.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/mcall.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/mcall.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/main.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/main.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/kmin.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/kmin.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/kmin.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/kheap.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/khash_str2str.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/hex.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/hclust.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/hclust.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/hclust.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/gvcf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/gvcf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/gvcf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/filter.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/filter.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/filter.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/extsort.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/extsort.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/extsort.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/em.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/em.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/dist.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/dist.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/dist.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/dbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/csq.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/csq.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/convert.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/convert.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/convert.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/consensus.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/consensus.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/cols.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/cols.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/cols.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/cigar_state.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/ccall.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/ccall.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/call.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bin.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bin.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bin.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bcftools.pysam.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bcftools.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bcftools.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam_sample.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam_sample.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam_sample.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf_indel.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf_iaux.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/bam2bcf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/abuf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/abuf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/abuf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/README -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/LICENSE -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/HMM.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/HMM.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-312/pysam/include/bcftools/HMM.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/bcftools creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/config.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools creating /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4/lz4.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4/lz4.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4/lz4.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/lz4/LICENSE -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/version.sh -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/tmp_file.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/tmp_file.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/tmp_file.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/stats_isize.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/stats_isize.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/stats_isize.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/stats.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/stats.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/splaysort.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/samtools.pysam.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/samtools.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/samtools.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sample.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sample.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sample.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_view.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_view.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_utils.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_utils.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_utils.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_opts.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_opts.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/sam_opts.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/reset.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/reset.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/reference.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/reference.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/phase.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/phase.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/padding.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/padding.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/faidx.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/faidx.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/dict.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/dict.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/cut_target.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/cut_target.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/cram_size.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/cram_size.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/coverage.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/coverage.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/consensus_pileup.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/consensus_pileup.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/consensus_pileup.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bedidx.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bedidx.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bedidx.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bedcov.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bedcov.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bamtk.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bamtk.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bamshuf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bamshuf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_stat.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_stat.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_split.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_split.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_sort.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_sort.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_samples.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_samples.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_rmdupse.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_rmdup.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_rmdup.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_reheader.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_reheader.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_quickcheck.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_plcmd.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_plcmd.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_plbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_plbuf.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_plbuf.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_md.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_md.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_mate.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_mate.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_markdup.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_markdup.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_lpileup.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_lpileup.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_lpileup.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_index.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_index.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_import.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_import.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_flags.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_flags.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_fastq.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_fastq.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_consensus.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_consensus.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_color.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_color.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_cat.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_cat.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_aux.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_aux.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_ampliconclip.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_ampliconclip.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_addrprg.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam_addrprg.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam2depth.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam2depth.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam.h -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/bam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/amplicon_stats.c.pysam.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/amplicon_stats.c -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/README -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/samtools/LICENSE -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-312/pysam/include/__init__.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include copying build/lib.linux-ppc64le-cpython-312/pysam/Pileup.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/__init__.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/bcftools.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/samtools.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/utils.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/version.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam copying build/lib.linux-ppc64le-cpython-312/pysam/config.py -> /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam byte-compiling /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/include/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/bcftools.py to bcftools.cpython-312.pyc writing byte-compilation script '/tmp/tmpp2deokgf.py' /usr/bin/python3 /tmp/tmpp2deokgf.py removing /tmp/tmpp2deokgf.py running install_egg_info running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing requirements to pysam.egg-info/requires.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' no previously-included directories found matching 'tests/' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' Copying pysam.egg-info to /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam-0.21.0-py3.12.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/bin/__pycache__ + rm /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcalignedsegment.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcalignmentfile.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcbcf.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcbcftools.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcbgzf.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcfaidx.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libchtslib.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcsamfile.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcsamtools.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libctabix.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libctabixproxies.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcutils.pyx /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/libcvcf.pyx + rm /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/htslib_util.c /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12/site-packages/pysam/pysam_util.c + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.21.0-2.fc40 --unique-debug-suffix -0.21.0-2.fc40.ppc64le --unique-debug-src-base python-pysam-0.21.0-2.fc40.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/pysam-0.21.0 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-pysam-0.21.0-2.fc40.ppc64le 52964 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/python3.12/site-packages/pysam/include/samtools/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.12/site-packages/pysam/include/bcftools/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.12/site-packages/pysam/include/htslib/configure from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.12/site-packages/pysam/include/htslib/version.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: python3-pysam-0.21.0-2.fc40.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.EWESQR + umask 022 + cd /builddir/build/BUILD + cd pysam-0.21.0 + DOCDIR=/builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/doc/python3-pysam + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/doc/python3-pysam + cp -pr /builddir/build/BUILD/pysam-0.21.0/README.rst /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/doc/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.LsFgcf + umask 022 + cd /builddir/build/BUILD + cd pysam-0.21.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/licenses/python3-pysam + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/pysam-0.21.0/COPYING /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/pysam-0.21.0/bcftools/LICENSE /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/pysam-0.21.0/htslib/LICENSE /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/pysam-0.21.0/samtools/LICENSE /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/licenses/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE Provides: bundled(bcftools) = 1.18 bundled(htslib) = 1.18 bundled(samtools) = 1.18 libcalignedsegment.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcalignmentfile.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcbcf.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcbcftools.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcbgzf.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcfaidx.cpython-312-powerpc64le-linux-gnu.so()(64bit) libchtslib.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcsamfile.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcsamtools.cpython-312-powerpc64le-linux-gnu.so()(64bit) libctabix.cpython-312-powerpc64le-linux-gnu.so()(64bit) libctabixproxies.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcutils.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcvcf.cpython-312-powerpc64le-linux-gnu.so()(64bit) python-pysam = 0.21.0-2.fc40 python3-pysam = 0.21.0-2.fc40 python3-pysam(ppc-64) = 0.21.0-2.fc40 python3.12-pysam = 0.21.0-2.fc40 python3.12dist(pysam) = 0.21 python3dist(pysam) = 0.21 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libcbcftools.cpython-312-powerpc64le-linux-gnu.so()(64bit) libchtslib.cpython-312-powerpc64le-linux-gnu.so()(64bit) libcsamtools.cpython-312-powerpc64le-linux-gnu.so()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libz.so.1()(64bit) python(abi) = 3.12 python3.12dist(cython) rtld(GNU_HASH) Obsoletes: python-pysam < 0.21.0-2.fc40 Processing files: python3-pysam-devel-0.21.0-2.fc40.ppc64le Provides: python-pysam-devel = 0.21.0-2.fc40 python3-pysam-devel = 0.21.0-2.fc40 python3-pysam-devel(ppc-64) = 0.21.0-2.fc40 python3.12-pysam-devel = 0.21.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh python(abi) = 3.12 Processing files: python-pysam-doc-0.21.0-2.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RJA4qU + umask 022 + cd /builddir/build/BUILD + cd pysam-0.21.0 + DOCDIR=/builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/doc/python-pysam-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/doc/python-pysam-doc + cp -pr /builddir/build/BUILD/pysam-0.21.0/html /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le/usr/share/doc/python-pysam-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pysam-doc = 0.21.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python-pysam-debugsource-0.21.0-2.fc40.ppc64le Provides: python-pysam-debugsource = 0.21.0-2.fc40 python-pysam-debugsource(ppc-64) = 0.21.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-pysam-debuginfo-0.21.0-2.fc40.ppc64le Provides: debuginfo(build-id) = 174b2726bbfdf37481278f0143d02494f72e75c7 debuginfo(build-id) = 3b19c4e0c27aded908b5014c4981240164bde37e debuginfo(build-id) = 68d4fe916bd8d9b9b3fd19a689b5bc97796dccdf debuginfo(build-id) = 79f4f78d35b9e6871377d48f85cdde8af09304c0 debuginfo(build-id) = 92633b8da8374cec13823fc2f5987fa1cada52b6 debuginfo(build-id) = 951ec2754a463b25ad05606cf213b04873b15ceb debuginfo(build-id) = a8d909e083f3ea2c760180ded36479cde75e4aa4 debuginfo(build-id) = c53545de3ae8df339c9a5a39e34aa9cf9af8b3b6 debuginfo(build-id) = ce65d138aaf85bf01c5d2b12ff98e322a17c9099 debuginfo(build-id) = de25b29c91f34bf90a471da022e569ff58632bf3 debuginfo(build-id) = eb1590e7ade539e7b181c7d6fb90da253a06ad6b debuginfo(build-id) = f0edaeeb245a694ebb9d0677422689ab2d8a8c4e debuginfo(build-id) = f855383a92f8a8a0f58e12a96aa035f289a547ee libcalignedsegment.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcalignmentfile.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcbcf.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcbcftools.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcbgzf.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcfaidx.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libchtslib.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcsamfile.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcsamtools.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libctabix.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libctabixproxies.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcutils.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) libcvcf.cpython-312-powerpc64le-linux-gnu.so-0.21.0-2.fc40.ppc64le.debug()(64bit) python-pysam-debuginfo = 0.21.0-2.fc40 python3-pysam-debuginfo = 0.21.0-2.fc40 python3-pysam-debuginfo(ppc-64) = 0.21.0-2.fc40 python3.12-pysam-debuginfo = 0.21.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-pysam-debugsource(ppc-64) = 0.21.0-2.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le Wrote: /builddir/build/RPMS/python3-pysam-debuginfo-0.21.0-2.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/python-pysam-debugsource-0.21.0-2.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/python3-pysam-devel-0.21.0-2.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/python-pysam-doc-0.21.0-2.fc40.noarch.rpm Wrote: /builddir/build/RPMS/python3-pysam-0.21.0-2.fc40.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.HC0kfP + umask 022 + cd /builddir/build/BUILD + cd pysam-0.21.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pysam-0.21.0-2.fc40.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.BCTybT + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/pysam-0.21.0-SPECPARTS + rm -rf pysam-0.21.0 pysam-0.21.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: File listed twice: /usr/share/licenses/python3-pysam/LICENSE File listed twice: /usr/share/licenses/python3-pysam/LICENSE Finish: rpmbuild python-pysam-0.21.0-2.fc40.src.rpm Finish: build phase for python-pysam-0.21.0-2.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1694963795.467607/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/python-pysam-0.21.0-2.fc40.src.rpm) Config(child) 14 minutes 28 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-pysam-devel", "epoch": null, "version": "0.21.0", "release": "2.fc40", "arch": "ppc64le" }, { "name": "python-pysam-debugsource", "epoch": null, "version": "0.21.0", "release": "2.fc40", "arch": "ppc64le" }, { "name": "python3-pysam-debuginfo", "epoch": null, "version": "0.21.0", "release": "2.fc40", "arch": "ppc64le" }, { "name": "python-pysam", "epoch": null, "version": "0.21.0", "release": "2.fc40", "arch": "src" }, { "name": "python-pysam-doc", "epoch": null, "version": "0.21.0", "release": "2.fc40", "arch": "noarch" }, { "name": "python3-pysam", "epoch": null, "version": "0.21.0", "release": "2.fc40", "arch": "ppc64le" } ] } RPMResults finished