Warning: Permanently added '54.87.104.44' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408290-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.69 PID: 5717 Logging PID: 5718 Task: {'appstream': False, 'background': True, 'build_id': 6408290, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'b43ac973914abe9602e626ce93aee30180d953cc', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/R-Rhtslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rhtslib', 'package_version': '1.28.0-4%{dist}', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6408290-fedora-rawhide-aarch64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/R-Rhtslib /var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/R-Rhtslib', '/var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib'... Running: git checkout b43ac973914abe9602e626ce93aee30180d953cc -- cmd: ['git', 'checkout', 'b43ac973914abe9602e626ce93aee30180d953cc', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib rc: 0 stdout: stderr: Note: switching to 'b43ac973914abe9602e626ce93aee30180d953cc'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b43ac97 automatic import of R-Rhtslib Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rhtslib_1.28.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rhtslib_1.28.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/R-Rhtslib/Rhtslib_1.28.0.tar.gz/md5/68bbb8477444f2c8e7bbf7720ece120f/Rhtslib_1.28.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Dload Upload Total Spent Left Speed 100 1436k 100 1436k 0 0 16.1M 0 --:--:-- --:--:-- --:--:-- 16.3M INFO: Reading stdout from command: md5sum Rhtslib_1.28.0.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695197320.022112 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib/R-Rhtslib.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695197320.022112/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695197320.022112/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/f07eb8f6c1dcc11461e9e89137af54e5407d8cc570a8af8b25a4c2f598a309cc/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/f07eb8f6c1dcc11461e9e89137af54e5407d8cc570a8af8b25a4c2f598a309cc/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 43 MB/s | 6.7 MB 00:00 fedora 48 MB/s | 69 MB 00:01 Last metadata expiration check: 0:00:01 ago on Wed Sep 20 08:08:47 2023. Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus aarch64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd aarch64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 4.6 M Downloading Packages: (1/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 14 MB/s | 355 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm 6.2 MB/s | 157 kB 00:00 (3/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 26 MB/s | 293 kB 00:00 (4/7): python3-distro-1.8.0-6.fc39.noarch.rpm 4.1 MB/s | 49 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 11 MB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.aarch64.rpm 1.5 MB/s | 107 kB 00:00 (7/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm 1.2 MB/s | 156 kB 00:00 -------------------------------------------------------------------------------- Total 788 kB/s | 1.1 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.aarch64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 5/7 Installing : python3-dbus-1.3.2-4.fc39.aarch64 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.aarch64 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.aarch64 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 119 MB/s | 6.7 MB 00:00 fedora 49 MB/s | 69 MB 00:01 Last metadata expiration check: 0:00:01 ago on Wed Sep 20 08:09:13 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash aarch64 5.2.15-5.fc39 fedora 1.8 M bzip2 aarch64 1.0.8-16.fc39 fedora 52 k coreutils aarch64 9.4-1.fc40 fedora 1.2 M cpio aarch64 2.14-4.fc39 fedora 277 k diffutils aarch64 3.10-3.fc39 fedora 396 k fedora-release-common noarch 40-0.7 fedora 18 k findutils aarch64 1:4.9.0-6.fc40 fedora 495 k gawk aarch64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack aarch64 2.38.9000-9.fc40 fedora 74 k grep aarch64 3.11-5.fc40 fedora 296 k gzip aarch64 1.12-6.fc39 fedora 164 k info aarch64 7.0.3-3.fc39 fedora 179 k patch aarch64 2.7.6-22.fc39 fedora 123 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build aarch64 4.18.99-1.fc40 copr_base 72 k sed aarch64 4.8-14.fc39 fedora 304 k shadow-utils aarch64 2:4.14.0-1.fc40 fedora 1.3 M tar aarch64 2:1.35-2.fc40 fedora 854 k unzip aarch64 6.0-62.fc39 fedora 183 k util-linux aarch64 2.39.2-1.fc40 copr_base 1.1 M which aarch64 2.21-40.fc39 fedora 42 k xz aarch64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives aarch64 1.25-1.fc39 fedora 38 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs aarch64 3.1.2-4.fc40 fedora 118 k authselect aarch64 1.4.2-3.fc39 fedora 144 k authselect-libs aarch64 1.4.2-3.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils aarch64 2.41-5.fc40 fedora 6.7 M binutils-gold aarch64 2.41-5.fc40 fedora 948 k bzip2-libs aarch64 1.0.8-16.fc39 fedora 43 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common aarch64 9.4-1.fc40 fedora 2.1 M cracklib aarch64 2.9.11-2.fc40 copr_base 84 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl aarch64 8.3.0-1.fc40 copr_base 350 k cyrus-sasl-lib aarch64 2.1.28-11.fc40 copr_base 781 k debugedit aarch64 5.0-10.fc39 fedora 77 k dwz aarch64 0.15-3.fc39 fedora 136 k ed aarch64 1.19-4.fc39 fedora 78 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils aarch64 0.189-6.fc40 fedora 539 k elfutils-debuginfod-client aarch64 0.189-6.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf aarch64 0.189-6.fc40 fedora 194 k elfutils-libs aarch64 0.189-6.fc40 fedora 258 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file aarch64 5.45-1.fc40 copr_base 50 k file-libs aarch64 5.45-1.fc40 copr_base 762 k filesystem aarch64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal aarch64 13.2-9.fc40 fedora 3.8 M gdbm-libs aarch64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc aarch64 2.38.9000-9.fc40 fedora 1.7 M glibc-common aarch64 2.38.9000-9.fc40 fedora 351 k glibc-gconv-extra aarch64 2.38.9000-9.fc40 fedora 2.0 M gmp aarch64 1:6.2.1-5.fc39 fedora 266 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson aarch64 2.13.1-7.fc39 fedora 46 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs aarch64 1.6.1-7.fc39 fedora 31 k krb5-libs aarch64 1.21.2-1.fc40 fedora 772 k libacl aarch64 2.3.1-9.fc40 fedora 23 k libarchive aarch64 3.7.2-1.fc40 copr_base 403 k libattr aarch64 2.5.1-9.fc40 fedora 18 k libblkid aarch64 2.39.2-1.fc40 copr_base 116 k libbrotli aarch64 1.1.0-1.fc40 fedora 344 k libcap aarch64 2.48-7.fc39 fedora 68 k libcap-ng aarch64 0.8.3-8.fc40 fedora 32 k libcom_err aarch64 1.47.0-2.fc39 fedora 26 k libcurl aarch64 8.3.0-1.fc40 copr_base 337 k libdb aarch64 5.3.28-58.fc40 copr_base 735 k libeconf aarch64 0.5.2-1.fc40 fedora 30 k libevent aarch64 2.1.12-9.fc39 fedora 254 k libfdisk aarch64 2.39.2-1.fc40 copr_base 158 k libffi aarch64 3.4.4-4.fc39 fedora 38 k libgcc aarch64 13.2.1-1.fc40 copr_base 94 k libgomp aarch64 13.2.1-1.fc40 copr_base 311 k libidn2 aarch64 2.3.4-3.fc39 fedora 118 k libmount aarch64 2.39.2-1.fc40 copr_base 153 k libnghttp2 aarch64 1.56.0-1.fc40 copr_base 76 k libnsl2 aarch64 2.0.0-6.fc39 fedora 30 k libpkgconf aarch64 1.9.5-2.fc39 fedora 38 k libpsl aarch64 0.21.2-4.fc39 fedora 63 k libpwquality aarch64 1.4.5-6.fc39 fedora 120 k libselinux aarch64 3.5-5.fc39 fedora 86 k libsemanage aarch64 3.5-4.fc39 fedora 117 k libsepol aarch64 3.5-2.fc39 fedora 311 k libsigsegv aarch64 2.14-5.fc39 fedora 27 k libsmartcols aarch64 2.39.2-1.fc40 copr_base 66 k libssh aarch64 0.10.5-2.fc40 copr_base 212 k libssh-config noarch 0.10.5-2.fc40 copr_base 9.7 k libstdc++ aarch64 13.2.1-1.fc40 copr_base 810 k libtasn1 aarch64 4.19.0-3.fc39 fedora 73 k libtirpc aarch64 1.3.3-1.rc2.fc39 fedora 95 k libunistring aarch64 1.1-5.fc40 fedora 540 k libutempter aarch64 1.2.1-10.fc39 fedora 27 k libuuid aarch64 2.39.2-1.fc40 copr_base 28 k libverto aarch64 0.3.2-6.fc39 fedora 21 k libxcrypt aarch64 4.4.36-2.fc39 fedora 123 k libxml2 aarch64 2.11.5-1.fc40 copr_base 687 k libzstd aarch64 1.5.5-4.fc40 copr_base 281 k lua-libs aarch64 5.4.6-3.fc39 fedora 131 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs aarch64 1.9.4-4.fc39 fedora 68 k mpfr aarch64 4.2.0-3.fc39 fedora 319 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs aarch64 6.4-7.20230520.fc40 fedora 326 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap aarch64 2.6.6-1.fc39 fedora 251 k openssl-libs aarch64 1:3.1.1-4.fc40 copr_base 2.0 M p11-kit aarch64 0.25.0-2.fc39 fedora 481 k p11-kit-trust aarch64 0.25.0-2.fc39 fedora 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam aarch64 1.5.3-2.fc39 fedora 558 k pam-libs aarch64 1.5.3-2.fc39 fedora 58 k pcre2 aarch64 10.42-1.fc39.2 fedora 219 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf aarch64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config aarch64 1.9.5-2.fc39 fedora 9.6 k popt aarch64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline aarch64 8.2-4.fc39 fedora 211 k rpm aarch64 4.18.99-1.fc40 copr_base 509 k rpm-build-libs aarch64 4.18.99-1.fc40 copr_base 92 k rpm-libs aarch64 4.18.99-1.fc40 copr_base 306 k rpm-sequoia aarch64 1.5.0-1.fc40 fedora 842 k rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs aarch64 3.43.1-1.fc40 fedora 679 k systemd-libs aarch64 254.2-7.fc40 fedora 668 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core aarch64 2.39.2-1.fc40 copr_base 477 k xxhash-libs aarch64 0.8.2-1.fc39 fedora 35 k xz-libs aarch64 5.4.4-1.fc39 fedora 106 k zip aarch64 3.0-39.fc40 fedora 262 k zlib-ng-compat aarch64 2.1.3-4.fc40 copr_base 66 k zstd aarch64 1.5.5-4.fc40 copr_base 446 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total download size: 53 M Installed size: 304 M Downloading Packages: (1/153): cracklib-2.9.11-2.fc40.aarch64.rpm 4.8 MB/s | 84 kB 00:00 (2/153): curl-8.3.0-1.fc40.aarch64.rpm 18 MB/s | 350 kB 00:00 (3/153): file-5.45-1.fc40.aarch64.rpm 20 MB/s | 50 kB 00:00 (4/153): file-libs-5.45-1.fc40.aarch64.rpm 149 MB/s | 762 kB 00:00 (5/153): libarchive-3.7.2-1.fc40.aarch64.rpm 78 MB/s | 403 kB 00:00 (6/153): cyrus-sasl-lib-2.1.28-11.fc40.aarch64. 29 MB/s | 781 kB 00:00 (7/153): libblkid-2.39.2-1.fc40.aarch64.rpm 50 MB/s | 116 kB 00:00 (8/153): libcurl-8.3.0-1.fc40.aarch64.rpm 98 MB/s | 337 kB 00:00 (9/153): libdb-5.3.28-58.fc40.aarch64.rpm 159 MB/s | 735 kB 00:00 (10/153): libfdisk-2.39.2-1.fc40.aarch64.rpm 43 MB/s | 158 kB 00:00 (11/153): libgcc-13.2.1-1.fc40.aarch64.rpm 49 MB/s | 94 kB 00:00 (12/153): libgomp-13.2.1-1.fc40.aarch64.rpm 129 MB/s | 311 kB 00:00 (13/153): libmount-2.39.2-1.fc40.aarch64.rpm 43 MB/s | 153 kB 00:00 (14/153): libnghttp2-1.56.0-1.fc40.aarch64.rpm 23 MB/s | 76 kB 00:00 (15/153): libsmartcols-2.39.2-1.fc40.aarch64.rp 26 MB/s | 66 kB 00:00 (16/153): libssh-0.10.5-2.fc40.aarch64.rpm 92 MB/s | 212 kB 00:00 (17/153): libssh-config-0.10.5-2.fc40.noarch.rp 4.1 MB/s | 9.7 kB 00:00 (18/153): libstdc++-13.2.1-1.fc40.aarch64.rpm 168 MB/s | 810 kB 00:00 (19/153): libuuid-2.39.2-1.fc40.aarch64.rpm 7.9 MB/s | 28 kB 00:00 (20/153): libxml2-2.11.5-1.fc40.aarch64.rpm 124 MB/s | 687 kB 00:00 (21/153): libzstd-1.5.5-4.fc40.aarch64.rpm 79 MB/s | 281 kB 00:00 (22/153): redhat-rpm-config-270-1.fc40.noarch.r 16 MB/s | 74 kB 00:00 (23/153): openssl-libs-3.1.1-4.fc40.aarch64.rpm 183 MB/s | 2.0 MB 00:00 (24/153): rpm-4.18.99-1.fc40.aarch64.rpm 61 MB/s | 509 kB 00:00 (25/153): rpm-build-4.18.99-1.fc40.aarch64.rpm 21 MB/s | 72 kB 00:00 (26/153): rpm-build-libs-4.18.99-1.fc40.aarch64 58 MB/s | 92 kB 00:00 (27/153): rpm-libs-4.18.99-1.fc40.aarch64.rpm 89 MB/s | 306 kB 00:00 (28/153): util-linux-2.39.2-1.fc40.aarch64.rpm 156 MB/s | 1.1 MB 00:00 (29/153): util-linux-core-2.39.2-1.fc40.aarch64 84 MB/s | 477 kB 00:00 (30/153): zlib-ng-compat-2.1.3-4.fc40.aarch64.r 26 MB/s | 66 kB 00:00 (31/153): zstd-1.5.5-4.fc40.aarch64.rpm 155 MB/s | 446 kB 00:00 (32/153): ansible-srpm-macros-1-11.fc39.noarch. 1.8 MB/s | 21 kB 00:00 (33/153): alternatives-1.25-1.fc39.aarch64.rpm 3.0 MB/s | 38 kB 00:00 (34/153): audit-libs-3.1.2-4.fc40.aarch64.rpm 9.3 MB/s | 118 kB 00:00 (35/153): authselect-1.4.2-3.fc39.aarch64.rpm 18 MB/s | 144 kB 00:00 (36/153): basesystem-11-18.fc39.noarch.rpm 1.6 MB/s | 7.2 kB 00:00 (37/153): 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-------------------------------------------------------------------------------- Total 84 MB/s | 53 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.aarch64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc40.aarch64 1/153 Running scriptlet: libgcc-13.2.1-1.fc40.aarch64 1/153 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Installing : tzdata-2023c-3.fc40.noarch 3/153 Installing : fedora-release-identity-basic-40-0.7.noarch 4/153 Installing : fedora-repos-rawhide-40-0.1.noarch 5/153 Installing : fedora-gpg-keys-40-0.1.noarch 6/153 Installing : fedora-repos-40-0.1.noarch 7/153 Installing : fedora-release-common-40-0.7.noarch 8/153 Installing : fedora-release-40-0.7.noarch 9/153 Installing : setup-2.14.4-1.fc39.noarch 10/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 10/153 Installing : filesystem-3.18-6.fc39.aarch64 11/153 Installing : basesystem-11-18.fc39.noarch 12/153 Installing : rust-srpm-macros-24-5.fc40.noarch 13/153 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lz4-libs-1.9.4-4.fc39.aarch64 46/153 Installing : systemd-libs-254.2-7.fc40.aarch64 47/153 Installing : mpfr-4.2.0-3.fc39.aarch64 48/153 Installing : dwz-0.15-3.fc39.aarch64 49/153 Installing : unzip-6.0-62.fc39.aarch64 50/153 Installing : file-libs-5.45-1.fc40.aarch64 51/153 Installing : file-5.45-1.fc40.aarch64 52/153 Installing : libsmartcols-2.39.2-1.fc40.aarch64 53/153 Installing : alternatives-1.25-1.fc39.aarch64 54/153 Installing : jansson-2.13.1-7.fc39.aarch64 55/153 Installing : libcap-ng-0.8.3-8.fc40.aarch64 56/153 Installing : audit-libs-3.1.2-4.fc40.aarch64 57/153 Installing : pam-libs-1.5.3-2.fc39.aarch64 58/153 Installing : libcom_err-1.47.0-2.fc39.aarch64 59/153 Installing : libsepol-3.5-2.fc39.aarch64 60/153 Installing : libunistring-1.1-5.fc40.aarch64 61/153 Installing : libidn2-2.3.4-3.fc39.aarch64 62/153 Installing : lua-libs-5.4.6-3.fc39.aarch64 63/153 Installing : pcre2-10.42-1.fc39.2.aarch64 64/153 Installing : libselinux-3.5-5.fc39.aarch64 65/153 Installing : sed-4.8-14.fc39.aarch64 66/153 Installing : grep-3.11-5.fc40.aarch64 67/153 Installing : findutils-1:4.9.0-6.fc40.aarch64 68/153 Installing : xz-5.4.4-1.fc39.aarch64 69/153 Installing : libmount-2.39.2-1.fc40.aarch64 70/153 Installing : util-linux-core-2.39.2-1.fc40.aarch64 71/153 Installing : libsemanage-3.5-4.fc39.aarch64 72/153 Installing : tar-2:1.35-2.fc40.aarch64 73/153 Installing : libpsl-0.21.2-4.fc39.aarch64 74/153 Installing : zip-3.0-39.fc40.aarch64 75/153 Installing : zstd-1.5.5-4.fc40.aarch64 76/153 Installing : libfdisk-2.39.2-1.fc40.aarch64 77/153 Installing : bzip2-1.0.8-16.fc39.aarch64 78/153 Installing : libxml2-2.11.5-1.fc40.aarch64 79/153 Installing : sqlite-libs-3.43.1-1.fc40.aarch64 80/153 Installing : ed-1.19-4.fc39.aarch64 81/153 Installing : patch-2.7.6-22.fc39.aarch64 82/153 Installing : elfutils-default-yama-scope-0.189-6.fc40.noarch 83/153 Running scriptlet: elfutils-default-yama-scope-0.189-6.fc40.noarch 83/153 Installing : libdb-5.3.28-58.fc40.aarch64 84/153 Installing : libgomp-13.2.1-1.fc40.aarch64 85/153 Installing : libnghttp2-1.56.0-1.fc40.aarch64 86/153 Installing : cpio-2.14-4.fc39.aarch64 87/153 Installing : diffutils-3.10-3.fc39.aarch64 88/153 Installing : gdbm-libs-1:1.23-4.fc39.aarch64 89/153 Installing : cyrus-sasl-lib-2.1.28-11.fc40.aarch64 90/153 Installing : keyutils-libs-1.6.1-7.fc39.aarch64 91/153 Installing : libbrotli-1.1.0-1.fc40.aarch64 92/153 Installing : libeconf-0.5.2-1.fc40.aarch64 93/153 Installing : shadow-utils-2:4.14.0-1.fc40.aarch64 94/153 Running scriptlet: libutempter-1.2.1-10.fc39.aarch64 95/153 Installing : libutempter-1.2.1-10.fc39.aarch64 95/153 Installing : libffi-3.4.4-4.fc39.aarch64 96/153 Installing : p11-kit-0.25.0-2.fc39.aarch64 97/153 Installing : libpkgconf-1.9.5-2.fc39.aarch64 98/153 Installing : pkgconf-1.9.5-2.fc39.aarch64 99/153 Installing : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 100/153 Installing : libsigsegv-2.14-5.fc39.aarch64 101/153 Installing : gawk-5.2.2-2.fc39.aarch64 102/153 Installing : libtasn1-4.19.0-3.fc39.aarch64 103/153 Installing : p11-kit-trust-0.25.0-2.fc39.aarch64 104/153 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.aarch64 104/153 Installing : libverto-0.3.2-6.fc39.aarch64 105/153 Installing : xxhash-libs-0.8.2-1.fc39.aarch64 106/153 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 107/153 Installing : gnat-srpm-macros-6-3.fc39.noarch 108/153 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 109/153 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 110/153 Installing : coreutils-common-9.4-1.fc40.aarch64 111/153 Installing : openssl-libs-1:3.1.1-4.fc40.aarch64 112/153 Installing : coreutils-9.4-1.fc40.aarch64 113/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Installing : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Installing : krb5-libs-1.21.2-1.fc40.aarch64 115/153 Installing : libtirpc-1.3.3-1.rc2.fc39.aarch64 116/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 117/153 Installing : authselect-libs-1.4.2-3.fc39.aarch64 117/153 Installing : gzip-1.12-6.fc39.aarch64 118/153 Installing : cracklib-2.9.11-2.fc40.aarch64 119/153 Installing : libpwquality-1.4.5-6.fc39.aarch64 120/153 Installing : authselect-1.4.2-3.fc39.aarch64 121/153 Installing : libnsl2-2.0.0-6.fc39.aarch64 122/153 Installing : pam-1.5.3-2.fc39.aarch64 123/153 Installing : libarchive-3.7.2-1.fc40.aarch64 124/153 Installing : libevent-2.1.12-9.fc39.aarch64 125/153 Installing : openldap-2.6.6-1.fc39.aarch64 126/153 Installing : rpm-sequoia-1.5.0-1.fc40.aarch64 127/153 Installing : rpm-libs-4.18.99-1.fc40.aarch64 128/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 129/153 Installing : libssh-config-0.10.5-2.fc40.noarch 130/153 Installing : libssh-0.10.5-2.fc40.aarch64 131/153 Installing : libcurl-8.3.0-1.fc40.aarch64 132/153 Installing : elfutils-libs-0.189-6.fc40.aarch64 133/153 Installing : elfutils-debuginfod-client-0.189-6.fc40.aarch64 134/153 Installing : binutils-gold-2.41-5.fc40.aarch64 135/153 Running scriptlet: binutils-gold-2.41-5.fc40.aarch64 135/153 Installing : binutils-2.41-5.fc40.aarch64 136/153 Running scriptlet: binutils-2.41-5.fc40.aarch64 136/153 Installing : elfutils-0.189-6.fc40.aarch64 137/153 Installing : gdb-minimal-13.2-9.fc40.aarch64 138/153 Installing : debugedit-5.0-10.fc39.aarch64 139/153 Installing : rpm-build-libs-4.18.99-1.fc40.aarch64 140/153 Installing : curl-8.3.0-1.fc40.aarch64 141/153 Running scriptlet: rpm-4.18.99-1.fc40.aarch64 142/153 Installing : rpm-4.18.99-1.fc40.aarch64 142/153 Installing : efi-srpm-macros-5-9.fc39.noarch 143/153 Installing : lua-srpm-macros-1-9.fc39.noarch 144/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/153 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 146/153 Installing : go-srpm-macros-3.2.0-7.fc40.noarch 147/153 Installing : python-srpm-macros-3.12-4.fc40.noarch 148/153 Installing : redhat-rpm-config-270-1.fc40.noarch 149/153 Installing : rpm-build-4.18.99-1.fc40.aarch64 150/153 Installing : util-linux-2.39.2-1.fc40.aarch64 151/153 Installing : which-2.21-40.fc39.aarch64 152/153 Installing : info-7.0.3-3.fc39.aarch64 153/153 Running scriptlet: filesystem-3.18-6.fc39.aarch64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 153/153 Running scriptlet: rpm-4.18.99-1.fc40.aarch64 153/153 Running scriptlet: info-7.0.3-3.fc39.aarch64 153/153 Verifying : cracklib-2.9.11-2.fc40.aarch64 1/153 Verifying : curl-8.3.0-1.fc40.aarch64 2/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc40.aarch64 3/153 Verifying : file-5.45-1.fc40.aarch64 4/153 Verifying : file-libs-5.45-1.fc40.aarch64 5/153 Verifying : libarchive-3.7.2-1.fc40.aarch64 6/153 Verifying : libblkid-2.39.2-1.fc40.aarch64 7/153 Verifying : libcurl-8.3.0-1.fc40.aarch64 8/153 Verifying : libdb-5.3.28-58.fc40.aarch64 9/153 Verifying : libfdisk-2.39.2-1.fc40.aarch64 10/153 Verifying : libgcc-13.2.1-1.fc40.aarch64 11/153 Verifying : libgomp-13.2.1-1.fc40.aarch64 12/153 Verifying : libmount-2.39.2-1.fc40.aarch64 13/153 Verifying : libnghttp2-1.56.0-1.fc40.aarch64 14/153 Verifying : libsmartcols-2.39.2-1.fc40.aarch64 15/153 Verifying : libssh-0.10.5-2.fc40.aarch64 16/153 Verifying : libssh-config-0.10.5-2.fc40.noarch 17/153 Verifying : libstdc++-13.2.1-1.fc40.aarch64 18/153 Verifying : libuuid-2.39.2-1.fc40.aarch64 19/153 Verifying : libxml2-2.11.5-1.fc40.aarch64 20/153 Verifying : libzstd-1.5.5-4.fc40.aarch64 21/153 Verifying : openssl-libs-1:3.1.1-4.fc40.aarch64 22/153 Verifying : redhat-rpm-config-270-1.fc40.noarch 23/153 Verifying : rpm-4.18.99-1.fc40.aarch64 24/153 Verifying : rpm-build-4.18.99-1.fc40.aarch64 25/153 Verifying : rpm-build-libs-4.18.99-1.fc40.aarch64 26/153 Verifying : rpm-libs-4.18.99-1.fc40.aarch64 27/153 Verifying : util-linux-2.39.2-1.fc40.aarch64 28/153 Verifying : util-linux-core-2.39.2-1.fc40.aarch64 29/153 Verifying : zlib-ng-compat-2.1.3-4.fc40.aarch64 30/153 Verifying : zstd-1.5.5-4.fc40.aarch64 31/153 Verifying : alternatives-1.25-1.fc39.aarch64 32/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 33/153 Verifying : audit-libs-3.1.2-4.fc40.aarch64 34/153 Verifying : authselect-1.4.2-3.fc39.aarch64 35/153 Verifying : authselect-libs-1.4.2-3.fc39.aarch64 36/153 Verifying : basesystem-11-18.fc39.noarch 37/153 Verifying : bash-5.2.15-5.fc39.aarch64 38/153 Verifying : binutils-2.41-5.fc40.aarch64 39/153 Verifying : binutils-gold-2.41-5.fc40.aarch64 40/153 Verifying : bzip2-1.0.8-16.fc39.aarch64 41/153 Verifying : bzip2-libs-1.0.8-16.fc39.aarch64 42/153 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 43/153 Verifying : coreutils-9.4-1.fc40.aarch64 44/153 Verifying : coreutils-common-9.4-1.fc40.aarch64 45/153 Verifying : cpio-2.14-4.fc39.aarch64 46/153 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 47/153 Verifying : debugedit-5.0-10.fc39.aarch64 48/153 Verifying : diffutils-3.10-3.fc39.aarch64 49/153 Verifying : dwz-0.15-3.fc39.aarch64 50/153 Verifying : ed-1.19-4.fc39.aarch64 51/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 52/153 Verifying : elfutils-0.189-6.fc40.aarch64 53/153 Verifying : elfutils-debuginfod-client-0.189-6.fc40.aarch64 54/153 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 55/153 Verifying : elfutils-libelf-0.189-6.fc40.aarch64 56/153 Verifying : elfutils-libs-0.189-6.fc40.aarch64 57/153 Verifying : fedora-gpg-keys-40-0.1.noarch 58/153 Verifying : fedora-release-40-0.7.noarch 59/153 Verifying : fedora-release-common-40-0.7.noarch 60/153 Verifying : fedora-release-identity-basic-40-0.7.noarch 61/153 Verifying : fedora-repos-40-0.1.noarch 62/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 63/153 Verifying : filesystem-3.18-6.fc39.aarch64 64/153 Verifying : findutils-1:4.9.0-6.fc40.aarch64 65/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 66/153 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 67/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 68/153 Verifying : gawk-5.2.2-2.fc39.aarch64 69/153 Verifying : gdb-minimal-13.2-9.fc40.aarch64 70/153 Verifying : gdbm-libs-1:1.23-4.fc39.aarch64 71/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 72/153 Verifying : glibc-2.38.9000-9.fc40.aarch64 73/153 Verifying : glibc-common-2.38.9000-9.fc40.aarch64 74/153 Verifying : glibc-gconv-extra-2.38.9000-9.fc40.aarch64 75/153 Verifying : glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 76/153 Verifying : gmp-1:6.2.1-5.fc39.aarch64 77/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 78/153 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 79/153 Verifying : grep-3.11-5.fc40.aarch64 80/153 Verifying : gzip-1.12-6.fc39.aarch64 81/153 Verifying : info-7.0.3-3.fc39.aarch64 82/153 Verifying : jansson-2.13.1-7.fc39.aarch64 83/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 84/153 Verifying : keyutils-libs-1.6.1-7.fc39.aarch64 85/153 Verifying : krb5-libs-1.21.2-1.fc40.aarch64 86/153 Verifying : libacl-2.3.1-9.fc40.aarch64 87/153 Verifying : libattr-2.5.1-9.fc40.aarch64 88/153 Verifying : libbrotli-1.1.0-1.fc40.aarch64 89/153 Verifying : libcap-2.48-7.fc39.aarch64 90/153 Verifying : libcap-ng-0.8.3-8.fc40.aarch64 91/153 Verifying : libcom_err-1.47.0-2.fc39.aarch64 92/153 Verifying : libeconf-0.5.2-1.fc40.aarch64 93/153 Verifying : libevent-2.1.12-9.fc39.aarch64 94/153 Verifying : libffi-3.4.4-4.fc39.aarch64 95/153 Verifying : libidn2-2.3.4-3.fc39.aarch64 96/153 Verifying : libnsl2-2.0.0-6.fc39.aarch64 97/153 Verifying : libpkgconf-1.9.5-2.fc39.aarch64 98/153 Verifying : libpsl-0.21.2-4.fc39.aarch64 99/153 Verifying : libpwquality-1.4.5-6.fc39.aarch64 100/153 Verifying : libselinux-3.5-5.fc39.aarch64 101/153 Verifying : libsemanage-3.5-4.fc39.aarch64 102/153 Verifying : libsepol-3.5-2.fc39.aarch64 103/153 Verifying : libsigsegv-2.14-5.fc39.aarch64 104/153 Verifying : libtasn1-4.19.0-3.fc39.aarch64 105/153 Verifying : libtirpc-1.3.3-1.rc2.fc39.aarch64 106/153 Verifying : libunistring-1.1-5.fc40.aarch64 107/153 Verifying : libutempter-1.2.1-10.fc39.aarch64 108/153 Verifying : libverto-0.3.2-6.fc39.aarch64 109/153 Verifying : libxcrypt-4.4.36-2.fc39.aarch64 110/153 Verifying : lua-libs-5.4.6-3.fc39.aarch64 111/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 112/153 Verifying : lz4-libs-1.9.4-4.fc39.aarch64 113/153 Verifying : mpfr-4.2.0-3.fc39.aarch64 114/153 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 115/153 Verifying : ncurses-libs-6.4-7.20230520.fc40.aarch64 116/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 117/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 118/153 Verifying : openldap-2.6.6-1.fc39.aarch64 119/153 Verifying : p11-kit-0.25.0-2.fc39.aarch64 120/153 Verifying : p11-kit-trust-0.25.0-2.fc39.aarch64 121/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 122/153 Verifying : pam-1.5.3-2.fc39.aarch64 123/153 Verifying : pam-libs-1.5.3-2.fc39.aarch64 124/153 Verifying : patch-2.7.6-22.fc39.aarch64 125/153 Verifying : pcre2-10.42-1.fc39.2.aarch64 126/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 127/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 128/153 Verifying : pkgconf-1.9.5-2.fc39.aarch64 129/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 130/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 131/153 Verifying : popt-1.19-3.fc39.aarch64 132/153 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 133/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 134/153 Verifying : python-srpm-macros-3.12-4.fc40.noarch 135/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 136/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 137/153 Verifying : readline-8.2-4.fc39.aarch64 138/153 Verifying : rpm-sequoia-1.5.0-1.fc40.aarch64 139/153 Verifying : rust-srpm-macros-24-5.fc40.noarch 140/153 Verifying : sed-4.8-14.fc39.aarch64 141/153 Verifying : setup-2.14.4-1.fc39.noarch 142/153 Verifying : shadow-utils-2:4.14.0-1.fc40.aarch64 143/153 Verifying : sqlite-libs-3.43.1-1.fc40.aarch64 144/153 Verifying : systemd-libs-254.2-7.fc40.aarch64 145/153 Verifying : tar-2:1.35-2.fc40.aarch64 146/153 Verifying : tzdata-2023c-3.fc40.noarch 147/153 Verifying : unzip-6.0-62.fc39.aarch64 148/153 Verifying : which-2.21-40.fc39.aarch64 149/153 Verifying : xxhash-libs-0.8.2-1.fc39.aarch64 150/153 Verifying : xz-5.4.4-1.fc39.aarch64 151/153 Verifying : xz-libs-5.4.4-1.fc39.aarch64 152/153 Verifying : zip-3.0-39.fc40.aarch64 153/153 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc40.aarch64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc40.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-9.fc40.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.aarch64 glibc-common-2.38.9000-9.fc40.aarch64 glibc-gconv-extra-2.38.9000-9.fc40.aarch64 glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-1.fc40.aarch64 libgomp-13.2.1-1.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc40.aarch64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-1.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc40.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.aarch64 rpm-build-4.18.99-1.fc40.aarch64 rpm-build-libs-4.18.99-1.fc40.aarch64 rpm-libs-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.2-7.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.3-4.fc40.aarch64 zstd-1.5.5-4.fc40.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc40.aarch64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc40.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-9.fc40.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.aarch64 glibc-common-2.38.9000-9.fc40.aarch64 glibc-gconv-extra-2.38.9000-9.fc40.aarch64 glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-1.fc40.aarch64 libgomp-13.2.1-1.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc40.aarch64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-1.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc40.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.aarch64 rpm-build-4.18.99-1.fc40.aarch64 rpm-build-libs-4.18.99-1.fc40.aarch64 rpm-libs-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.2-7.fc40.aarch64 tar-1.35-2.fc40.aarch64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.3-4.fc40.aarch64 zstd-1.5.5-4.fc40.aarch64 Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/R-Rhtslib-1.28.0-4.fc40.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6gzvj33s/R-Rhtslib/R-Rhtslib.spec) Config(child) 1 minutes 3 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rhtslib-1.28.0-4.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695197320.022112/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695197320.022112/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for R-Rhtslib-1.28.0-4.fc40.src.rpm Start: build setup for R-Rhtslib-1.28.0-4.fc40.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/R-Rhtslib-1.28.0-4.fc40.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 73 kB/s | 1.5 kB 00:00 fedora 85 kB/s | 11 kB 00:00 Dependencies resolved. ========================================================================================= Package Arch Version Repo Size ========================================================================================= Installing: R-devel aarch64 4.3.1-3.fc40 copr_base 11 k bzip2-devel aarch64 1.0.8-16.fc39 fedora 214 k libcurl-devel aarch64 8.3.0-1.fc40 copr_base 901 k xz-devel aarch64 5.4.4-1.fc39 fedora 66 k zlib-ng-compat-devel aarch64 2.1.3-4.fc40 copr_base 34 k Installing dependencies: R-core aarch64 4.3.1-3.fc40 copr_base 61 M R-core-devel aarch64 4.3.1-3.fc40 copr_base 86 k R-java aarch64 4.3.1-3.fc40 copr_base 11 k R-java-devel aarch64 4.3.1-3.fc40 copr_base 11 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib aarch64 1.2.10-3.fc40 fedora 511 k annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc aarch64 12.26-1.fc40 fedora 958 k avahi-libs aarch64 0.8-24.fc39 fedora 67 k brotli aarch64 1.1.0-1.fc40 fedora 19 k brotli-devel aarch64 1.1.0-1.fc40 fedora 34 k cairo aarch64 1.17.8-5.fc40 copr_base 689 k cmake-filesystem aarch64 3.27.4-8.fc40 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp aarch64 13.2.1-1.fc40 copr_base 9.7 M crypto-policies-scripts noarch 20230731-1.git5ed06e0.fc39 fedora 115 k cups-libs aarch64 1:2.4.6-6.fc40 copr_base 267 k dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k desktop-file-utils aarch64 0.26-9.fc39 fedora 71 k emacs-filesystem noarch 1:29.1-1.fc40 copr_base 8.9 k expat aarch64 2.5.0-3.fc39 fedora 108 k flexiblas aarch64 3.3.1-5.fc39 fedora 33 k flexiblas-devel aarch64 3.3.1-5.fc39 fedora 116 k flexiblas-netlib aarch64 3.3.1-5.fc39 fedora 2.6 M flexiblas-netlib64 aarch64 3.3.1-5.fc39 fedora 2.5 M flexiblas-openblas-openmp aarch64 3.3.1-5.fc39 fedora 16 k flexiblas-openblas-openmp64 aarch64 3.3.1-5.fc39 fedora 16 k fontconfig aarch64 2.14.2-5.fc40 fedora 301 k fontconfig-devel aarch64 2.14.2-5.fc40 fedora 165 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype aarch64 2.13.1-2.fc40 copr_base 406 k freetype-devel aarch64 2.13.1-2.fc40 copr_base 913 k fribidi aarch64 1.0.13-2.fc39 fedora 91 k gc aarch64 8.2.2-4.fc39 fedora 110 k gcc aarch64 13.2.1-1.fc40 copr_base 31 M gcc-c++ aarch64 13.2.1-1.fc40 copr_base 12 M gcc-gfortran aarch64 13.2.1-1.fc40 copr_base 11 M gcc-plugin-annobin aarch64 13.2.1-1.fc40 copr_base 47 k gettext aarch64 0.22-2.fc39 fedora 1.1 M gettext-envsubst aarch64 0.22-2.fc39 fedora 36 k gettext-libs aarch64 0.22-2.fc39 fedora 310 k gettext-runtime aarch64 0.22-2.fc39 fedora 119 k glib2 aarch64 2.78.0-2.fc40 fedora 2.8 M glib2-devel aarch64 2.78.0-2.fc40 fedora 597 k glibc-devel aarch64 2.38.9000-9.fc40 fedora 582 k gnutls aarch64 3.8.1-1.fc40 fedora 1.0 M google-noto-fonts-common noarch 20230801-3.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-3.fc40 fedora 583 k graphite2 aarch64 1.3.14-12.fc39 fedora 93 k graphite2-devel aarch64 1.3.14-12.fc39 fedora 20 k guile22 aarch64 2.2.7-9.fc39 fedora 6.5 M harfbuzz aarch64 8.2.0-1.fc40 fedora 933 k harfbuzz-devel aarch64 8.2.0-1.fc40 fedora 450 k harfbuzz-icu aarch64 8.2.0-1.fc40 fedora 17 k java-17-openjdk aarch64 1:17.0.8.0.7-1.fc39 fedora 402 k java-17-openjdk-devel aarch64 1:17.0.8.0.7-1.fc39 fedora 4.7 M java-17-openjdk-headless aarch64 1:17.0.8.0.7-1.fc39 fedora 44 M javapackages-filesystem noarch 6.2.0-3.fc40 fedora 12 k jbigkit-libs aarch64 2.1-26.fc39 fedora 53 k kernel-headers aarch64 6.6.0-0.rc2.git0.1.fc40 fedora 1.5 M libICE aarch64 1.0.10-12.fc40 fedora 69 k libRmath aarch64 4.3.1-3.fc40 copr_base 114 k libRmath-devel aarch64 4.3.1-3.fc40 copr_base 16 k libSM aarch64 1.2.3-14.fc40 fedora 41 k libX11 aarch64 1.8.6-3.fc40 fedora 643 k libX11-common noarch 1.8.6-3.fc40 fedora 175 k libX11-devel aarch64 1.8.6-3.fc40 fedora 1.0 M libX11-xcb aarch64 1.8.6-3.fc40 fedora 12 k libXau aarch64 1.0.11-4.fc40 fedora 32 k libXau-devel aarch64 1.0.11-4.fc40 fedora 14 k libXcomposite aarch64 0.4.5-11.fc40 fedora 23 k libXext aarch64 1.3.5-3.fc39 fedora 39 k libXft aarch64 2.3.8-4.fc40 fedora 71 k libXft-devel aarch64 2.3.8-4.fc40 fedora 50 k libXi aarch64 1.8.1-3.fc40 fedora 39 k libXmu aarch64 1.1.4-4.fc40 fedora 76 k libXrender aarch64 0.9.11-4.fc40 fedora 27 k libXrender-devel aarch64 0.9.11-4.fc40 fedora 19 k libXt aarch64 1.2.1-6.fc40 fedora 176 k libXtst aarch64 1.2.4-3.fc39 fedora 21 k libasan aarch64 13.2.1-1.fc40 copr_base 455 k libatomic aarch64 13.2.1-1.fc40 copr_base 36 k libb2 aarch64 0.98.1-9.fc39 fedora 24 k libblkid-devel aarch64 2.39.2-1.fc40 copr_base 18 k libdatrie aarch64 0.2.13-7.fc39 fedora 32 k libffi-devel aarch64 3.4.4-4.fc39 fedora 28 k libfontenc aarch64 1.1.6-3.fc40 copr_base 33 k libgfortran aarch64 13.2.1-1.fc40 copr_base 438 k libicu aarch64 73.2-2.fc39 fedora 10 M libicu-devel aarch64 73.2-2.fc39 fedora 925 k libjpeg-turbo aarch64 2.1.4-3.fc39 fedora 196 k liblerc aarch64 4.0.0-4.fc39 fedora 179 k libmount-devel aarch64 2.39.2-1.fc40 copr_base 19 k libmpc aarch64 1.3.1-3.fc39 fedora 72 k libpng aarch64 2:1.6.37-15.fc39 fedora 115 k libpng-devel aarch64 2:1.6.37-15.fc39 fedora 291 k libselinux-devel aarch64 3.5-5.fc39 fedora 151 k libsepol-devel aarch64 3.5-2.fc39 fedora 49 k libstdc++-devel aarch64 13.2.1-1.fc40 copr_base 2.5 M libthai aarch64 0.1.29-6.fc39 fedora 213 k libtiff aarch64 4.4.0-8.fc40 copr_base 196 k libtirpc-devel aarch64 1.3.3-1.rc2.fc39 fedora 125 k libtool-ltdl aarch64 2.4.7-8.fc40 fedora 36 k libubsan aarch64 13.2.1-1.fc40 copr_base 204 k libwebp aarch64 1.3.2-1.fc40 fedora 243 k libxcb aarch64 1.13.1-12.fc39 fedora 238 k libxcb-devel aarch64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel aarch64 4.4.36-2.fc39 fedora 30 k libxml2-devel aarch64 2.11.5-1.fc40 copr_base 498 k lksctp-tools aarch64 1.0.19-4.fc39 fedora 93 k lua aarch64 5.4.6-3.fc39 fedora 189 k lua-posix aarch64 36.2.1-3.fc39 fedora 147 k make aarch64 1:4.4.1-2.fc39 fedora 585 k mkfontscale aarch64 1.2.2-4.fc40 copr_base 32 k mpdecimal aarch64 2.5.1-7.fc39 fedora 90 k nettle aarch64 3.9.1-2.fc39 fedora 434 k nspr aarch64 4.35.0-13.fc40 copr_base 136 k nss aarch64 3.93.0-2.fc40 copr_base 692 k nss-softokn aarch64 3.93.0-2.fc40 copr_base 1.0 M nss-softokn-freebl aarch64 3.93.0-2.fc40 copr_base 309 k nss-sysinit aarch64 3.93.0-2.fc40 copr_base 19 k nss-util aarch64 3.93.0-2.fc40 copr_base 86 k openblas aarch64 0.3.21-6.fc39 fedora 35 k openblas-openmp aarch64 0.3.21-6.fc39 fedora 3.7 M openblas-openmp64 aarch64 0.3.21-6.fc39 fedora 3.7 M pango aarch64 1.51.0-1.fc40 fedora 339 k pcre2-devel aarch64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 aarch64 10.42-1.fc39.2 fedora 199 k pcre2-utf32 aarch64 10.42-1.fc39.2 fedora 187 k pixman aarch64 0.42.2-2.fc39 fedora 216 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 aarch64 3.12.0~rc2-1.fc40 fedora 26 k python3-libs aarch64 3.12.0~rc2-1.fc40 fedora 9.1 M python3-setuptools noarch 67.7.2-7.fc40 fedora 1.5 M sysprof-capture-devel aarch64 3.48.0-2.fc39 fedora 54 k tcl aarch64 1:8.6.13-1.fc40 copr_base 1.1 M tcl-devel aarch64 1:8.6.13-1.fc40 copr_base 164 k tk aarch64 1:8.6.13-1.fc40 fedora 1.6 M tk-devel aarch64 1:8.6.13-1.fc40 fedora 541 k tre aarch64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 40 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel aarch64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir aarch64 3.0.9-69.fc40 copr_base 52 k tzdata-java noarch 2023c-3.fc40 fedora 48 k xdg-utils noarch 1.1.3-15.fc40 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-3.fc40 fedora 298 k Transaction Summary ========================================================================================= Install 155 Packages Total download size: 253 M Installed size: 856 M Downloading Packages: (1/155): R-devel-4.3.1-3.fc40.aarch64.rpm 332 kB/s | 11 kB 00:00 (2/155): R-core-devel-4.3.1-3.fc40.aarch64.rpm 2.5 MB/s | 86 kB 00:00 (3/155): R-java-4.3.1-3.fc40.aarch64.rpm 1.9 MB/s | 11 kB 00:00 (4/155): cairo-1.17.8-5.fc40.aarch64.rpm 150 MB/s | 689 kB 00:00 (5/155): R-java-devel-4.3.1-3.fc40.aarch64.rpm 981 kB/s | 11 kB 00:00 (6/155): cups-libs-2.4.6-6.fc40.aarch64.rpm 65 MB/s | 267 kB 00:00 (7/155): emacs-filesystem-29.1-1.fc40.noarch.rp 3.9 MB/s | 8.9 kB 00:00 (8/155): freetype-2.13.1-2.fc40.aarch64.rpm 125 MB/s | 406 kB 00:00 (9/155): cpp-13.2.1-1.fc40.aarch64.rpm 208 MB/s | 9.7 MB 00:00 (10/155): freetype-devel-2.13.1-2.fc40.aarch64. 64 MB/s | 913 kB 00:00 (11/155): gcc-13.2.1-1.fc40.aarch64.rpm 209 MB/s | 31 MB 00:00 (12/155): gcc-c++-13.2.1-1.fc40.aarch64.rpm 66 MB/s | 12 MB 00:00 (13/155): gcc-plugin-annobin-13.2.1-1.fc40.aarc 2.7 MB/s | 47 kB 00:00 (14/155): gcc-gfortran-13.2.1-1.fc40.aarch64.rp 168 MB/s | 11 MB 00:00 (15/155): libRmath-4.3.1-3.fc40.aarch64.rpm 5.3 MB/s | 114 kB 00:00 (16/155): libasan-13.2.1-1.fc40.aarch64.rpm 80 MB/s | 455 kB 00:00 (17/155): libatomic-13.2.1-1.fc40.aarch64.rpm 18 MB/s | 36 kB 00:00 (18/155): libRmath-devel-4.3.1-3.fc40.aarch64.r 1.4 MB/s | 16 kB 00:00 (19/155): libblkid-devel-2.39.2-1.fc40.aarch64. 4.4 MB/s | 18 kB 00:00 (20/155): libcurl-devel-8.3.0-1.fc40.aarch64.rp 199 MB/s | 901 kB 00:00 (21/155): libfontenc-1.1.6-3.fc40.aarch64.rpm 15 MB/s | 33 kB 00:00 (22/155): libgfortran-13.2.1-1.fc40.aarch64.rpm 157 MB/s | 438 kB 00:00 (23/155): libmount-devel-2.39.2-1.fc40.aarch64. 2.9 MB/s | 19 kB 00:00 (24/155): libtiff-4.4.0-8.fc40.aarch64.rpm 45 MB/s | 196 kB 00:00 (25/155): libstdc++-devel-13.2.1-1.fc40.aarch64 166 MB/s | 2.5 MB 00:00 (26/155): libubsan-13.2.1-1.fc40.aarch64.rpm 28 MB/s | 204 kB 00:00 (27/155): mkfontscale-1.2.2-4.fc40.aarch64.rpm 14 MB/s | 32 kB 00:00 (28/155): libxml2-devel-2.11.5-1.fc40.aarch64.r 113 MB/s | 498 kB 00:00 (29/155): nspr-4.35.0-13.fc40.aarch64.rpm 73 MB/s | 136 kB 00:00 (30/155): nss-softokn-3.93.0-2.fc40.aarch64.rpm 190 MB/s | 1.0 MB 00:00 (31/155): nss-softokn-freebl-3.93.0-2.fc40.aarc 134 MB/s | 309 kB 00:00 (32/155): nss-3.93.0-2.fc40.aarch64.rpm 65 MB/s | 692 kB 00:00 (33/155): nss-sysinit-3.93.0-2.fc40.aarch64.rpm 5.3 MB/s | 19 kB 00:00 (34/155): nss-util-3.93.0-2.fc40.aarch64.rpm 29 MB/s | 86 kB 00:00 (35/155): tcl-8.6.13-1.fc40.aarch64.rpm 143 MB/s | 1.1 MB 00:00 (36/155): tcl-devel-8.6.13-1.fc40.aarch64.rpm 19 MB/s | 164 kB 00:00 (37/155): ttmkfdir-3.0.9-69.fc40.aarch64.rpm 30 MB/s | 52 kB 00:00 (38/155): zlib-ng-compat-devel-2.1.3-4.fc40.aar 20 MB/s | 34 kB 00:00 (39/155): abattis-cantarell-vf-fonts-0.301-10.f 8.1 MB/s | 121 kB 00:00 (40/155): R-rpm-macros-1.2.1-7.fc39.noarch.rpm 380 kB/s | 11 kB 00:00 (41/155): alsa-lib-1.2.10-3.fc40.aarch64.rpm 36 MB/s | 511 kB 00:00 (42/155): annobin-docs-12.26-1.fc40.noarch.rpm 18 MB/s | 94 kB 00:00 (43/155): avahi-libs-0.8-24.fc39.aarch64.rpm 12 MB/s | 67 kB 00:00 (44/155): R-core-4.3.1-3.fc40.aarch64.rpm 127 MB/s | 61 MB 00:00 (45/155): annobin-plugin-gcc-12.26-1.fc40.aarch 14 MB/s | 958 kB 00:00 (46/155): brotli-1.1.0-1.fc40.aarch64.rpm 335 kB/s | 19 kB 00:00 (47/155): brotli-devel-1.1.0-1.fc40.aarch64.rpm 13 MB/s | 34 kB 00:00 (48/155): copy-jdk-configs-4.1-3.fc39.noarch.rp 11 MB/s | 28 kB 00:00 (49/155): cmake-filesystem-3.27.4-8.fc40.aarch6 4.4 MB/s | 19 kB 00:00 (50/155): bzip2-devel-1.0.8-16.fc39.aarch64.rpm 35 MB/s | 214 kB 00:00 (51/155): crypto-policies-scripts-20230731-1.gi 29 MB/s | 115 kB 00:00 (52/155): desktop-file-utils-0.26-9.fc39.aarch6 24 MB/s | 71 kB 00:00 (53/155): dbus-libs-1.14.10-1.fc40.aarch64.rpm 12 MB/s | 156 kB 00:00 (54/155): expat-2.5.0-3.fc39.aarch64.rpm 16 MB/s | 108 kB 00:00 (55/155): default-fonts-core-sans-4.0-9.fc40.no 2.6 MB/s | 32 kB 00:00 (56/155): flexiblas-3.3.1-5.fc39.aarch64.rpm 14 MB/s | 33 kB 00:00 (57/155): flexiblas-devel-3.3.1-5.fc39.aarch64. 16 MB/s | 116 kB 00:00 (58/155): flexiblas-openblas-openmp-3.3.1-5.fc3 5.4 MB/s | 16 kB 00:00 (59/155): flexiblas-openblas-openmp64-3.3.1-5.f 6.3 MB/s | 16 kB 00:00 (60/155): fontconfig-2.14.2-5.fc40.aarch64.rpm 29 MB/s | 301 kB 00:00 (61/155): fontconfig-devel-2.14.2-5.fc40.aarch6 50 MB/s | 165 kB 00:00 (62/155): fonts-filesystem-2.0.5-12.fc39.noarch 1.2 MB/s | 8.2 kB 00:00 (63/155): fribidi-1.0.13-2.fc39.aarch64.rpm 14 MB/s | 91 kB 00:00 (64/155): flexiblas-netlib-3.3.1-5.fc39.aarch64 54 MB/s | 2.6 MB 00:00 (65/155): flexiblas-netlib64-3.3.1-5.fc39.aarch 51 MB/s | 2.5 MB 00:00 (66/155): gc-8.2.2-4.fc39.aarch64.rpm 11 MB/s | 110 kB 00:00 (67/155): gettext-envsubst-0.22-2.fc39.aarch64. 9.1 MB/s | 36 kB 00:00 (68/155): gettext-libs-0.22-2.fc39.aarch64.rpm 55 MB/s | 310 kB 00:00 (69/155): gettext-runtime-0.22-2.fc39.aarch64.r 20 MB/s | 119 kB 00:00 (70/155): gettext-0.22-2.fc39.aarch64.rpm 36 MB/s | 1.1 MB 00:00 (71/155): glib2-devel-2.78.0-2.fc40.aarch64.rpm 28 MB/s | 597 kB 00:00 (72/155): gnutls-3.8.1-1.fc40.aarch64.rpm 78 MB/s | 1.0 MB 00:00 (73/155): google-noto-fonts-common-20230801-3.f 5.3 MB/s | 17 kB 00:00 (74/155): glibc-devel-2.38.9000-9.fc40.aarch64. 26 MB/s | 582 kB 00:00 (75/155): google-noto-sans-vf-fonts-20230801-3. 45 MB/s | 583 kB 00:00 (76/155): glib2-2.78.0-2.fc40.aarch64.rpm 46 MB/s | 2.8 MB 00:00 (77/155): graphite2-devel-1.3.14-12.fc39.aarch6 3.7 MB/s | 20 kB 00:00 (78/155): harfbuzz-8.2.0-1.fc40.aarch64.rpm 117 MB/s | 933 kB 00:00 (79/155): harfbuzz-devel-8.2.0-1.fc40.aarch64.r 86 MB/s | 450 kB 00:00 (80/155): harfbuzz-icu-8.2.0-1.fc40.aarch64.rpm 7.4 MB/s | 17 kB 00:00 (81/155): java-17-openjdk-17.0.8.0.7-1.fc39.aar 81 MB/s | 402 kB 00:00 (82/155): graphite2-1.3.14-12.fc39.aarch64.rpm 1.8 MB/s | 93 kB 00:00 (83/155): java-17-openjdk-headless-17.0.8.0.7-1 291 MB/s | 44 MB 00:00 (84/155): java-17-openjdk-devel-17.0.8.0.7-1.fc 27 MB/s | 4.7 MB 00:00 (85/155): javapackages-filesystem-6.2.0-3.fc40. 2.2 MB/s | 12 kB 00:00 (86/155): jbigkit-libs-2.1-26.fc39.aarch64.rpm 9.4 MB/s | 53 kB 00:00 (87/155): libICE-1.0.10-12.fc40.aarch64.rpm 21 MB/s | 69 kB 00:00 (88/155): libSM-1.2.3-14.fc40.aarch64.rpm 9.5 MB/s | 41 kB 00:00 (89/155): guile22-2.2.7-9.fc39.aarch64.rpm 29 MB/s | 6.5 MB 00:00 (90/155): kernel-headers-6.6.0-0.rc2.git0.1.fc4 46 MB/s | 1.5 MB 00:00 (91/155): libX11-devel-1.8.6-3.fc40.aarch64.rpm 187 MB/s | 1.0 MB 00:00 (92/155): libX11-xcb-1.8.6-3.fc40.aarch64.rpm 4.9 MB/s | 12 kB 00:00 (93/155): libXau-1.0.11-4.fc40.aarch64.rpm 10 MB/s | 32 kB 00:00 (94/155): libXau-devel-1.0.11-4.fc40.aarch64.rp 5.2 MB/s | 14 kB 00:00 (95/155): libXcomposite-0.4.5-11.fc40.aarch64.r 8.7 MB/s | 23 kB 00:00 (96/155): libXext-1.3.5-3.fc39.aarch64.rpm 8.2 MB/s | 39 kB 00:00 (97/155): libXft-2.3.8-4.fc40.aarch64.rpm 15 MB/s | 71 kB 00:00 (98/155): libXft-devel-2.3.8-4.fc40.aarch64.rpm 21 MB/s | 50 kB 00:00 (99/155): libXi-1.8.1-3.fc40.aarch64.rpm 16 MB/s | 39 kB 00:00 (100/155): libXmu-1.1.4-4.fc40.aarch64.rpm 30 MB/s | 76 kB 00:00 (101/155): libXrender-0.9.11-4.fc40.aarch64.rpm 8.5 MB/s | 27 kB 00:00 (102/155): libXrender-devel-0.9.11-4.fc40.aarch 8.2 MB/s | 19 kB 00:00 (103/155): libXt-1.2.1-6.fc40.aarch64.rpm 35 MB/s | 176 kB 00:00 (104/155): libXtst-1.2.4-3.fc39.aarch64.rpm 8.1 MB/s | 21 kB 00:00 (105/155): libb2-0.98.1-9.fc39.aarch64.rpm 8.0 MB/s | 24 kB 00:00 (106/155): libX11-common-1.8.6-3.fc40.noarch.rp 2.7 MB/s | 175 kB 00:00 (107/155): libffi-devel-3.4.4-4.fc39.aarch64.rp 7.3 MB/s | 28 kB 00:00 (108/155): libdatrie-0.2.13-7.fc39.aarch64.rpm 1.3 MB/s | 32 kB 00:00 (109/155): libicu-73.2-2.fc39.aarch64.rpm 285 MB/s | 10 MB 00:00 (110/155): libicu-devel-73.2-2.fc39.aarch64.rpm 34 MB/s | 925 kB 00:00 (111/155): liblerc-4.0.0-4.fc39.aarch64.rpm 19 MB/s | 179 kB 00:00 (112/155): libjpeg-turbo-2.1.4-3.fc39.aarch64.r 13 MB/s | 196 kB 00:00 (113/155): libmpc-1.3.1-3.fc39.aarch64.rpm 18 MB/s | 72 kB 00:00 (114/155): libpng-devel-1.6.37-15.fc39.aarch64. 92 MB/s | 291 kB 00:00 (115/155): libpng-1.6.37-15.fc39.aarch64.rpm 17 MB/s | 115 kB 00:00 (116/155): libselinux-devel-3.5-5.fc39.aarch64. 25 MB/s | 151 kB 00:00 (117/155): libsepol-devel-3.5-2.fc39.aarch64.rp 5.5 MB/s | 49 kB 00:00 (118/155): libthai-0.1.29-6.fc39.aarch64.rpm 28 MB/s | 213 kB 00:00 (119/155): libtool-ltdl-2.4.7-8.fc40.aarch64.rp 11 MB/s | 36 kB 00:00 (120/155): libwebp-1.3.2-1.fc40.aarch64.rpm 21 MB/s | 243 kB 00:00 (121/155): libtirpc-devel-1.3.3-1.rc2.fc39.aarc 7.0 MB/s | 125 kB 00:00 (122/155): libxcb-devel-1.13.1-12.fc39.aarch64. 221 MB/s | 1.4 MB 00:00 (123/155): libxcb-1.13.1-12.fc39.aarch64.rpm 28 MB/s | 238 kB 00:00 (124/155): lksctp-tools-1.0.19-4.fc39.aarch64.r 37 MB/s | 93 kB 00:00 (125/155): libxcrypt-devel-4.4.36-2.fc39.aarch6 8.3 MB/s | 30 kB 00:00 (126/155): lua-5.4.6-3.fc39.aarch64.rpm 55 MB/s | 189 kB 00:00 (127/155): lua-posix-36.2.1-3.fc39.aarch64.rpm 38 MB/s | 147 kB 00:00 (128/155): mpdecimal-2.5.1-7.fc39.aarch64.rpm 13 MB/s | 90 kB 00:00 (129/155): nettle-3.9.1-2.fc39.aarch64.rpm 82 MB/s | 434 kB 00:00 (130/155): openblas-0.3.21-6.fc39.aarch64.rpm 15 MB/s | 35 kB 00:00 (131/155): make-4.4.1-2.fc39.aarch64.rpm 28 MB/s | 585 kB 00:00 (132/155): openblas-openmp-0.3.21-6.fc39.aarch6 210 MB/s | 3.7 MB 00:00 (133/155): openblas-openmp64-0.3.21-6.fc39.aarc 167 MB/s | 3.7 MB 00:00 (134/155): pango-1.51.0-1.fc40.aarch64.rpm 37 MB/s | 339 kB 00:00 (135/155): pcre2-devel-10.42-1.fc39.2.aarch64.r 58 MB/s | 505 kB 00:00 (136/155): pcre2-utf16-10.42-1.fc39.2.aarch64.r 27 MB/s | 199 kB 00:00 (137/155): pixman-0.42.2-2.fc39.aarch64.rpm 32 MB/s | 216 kB 00:00 (138/155): pcre2-utf32-10.42-1.fc39.2.aarch64.r 23 MB/s | 187 kB 00:00 (139/155): python3-3.12.0~rc2-1.fc40.aarch64.rp 8.9 MB/s | 26 kB 00:00 (140/155): python-pip-wheel-23.2.1-1.fc39.noarc 50 MB/s | 1.5 MB 00:00 (141/155): libX11-1.8.6-3.fc40.aarch64.rpm 2.1 MB/s | 643 kB 00:00 (142/155): sysprof-capture-devel-3.48.0-2.fc39. 13 MB/s | 54 kB 00:00 (143/155): python3-setuptools-67.7.2-7.fc40.noa 42 MB/s | 1.5 MB 00:00 (144/155): tk-8.6.13-1.fc40.aarch64.rpm 155 MB/s | 1.6 MB 00:00 (145/155): tre-0.8.0-41.20140228gitc2f5d13.fc39 2.5 MB/s | 40 kB 00:00 (146/155): tk-devel-8.6.13-1.fc40.aarch64.rpm 20 MB/s | 541 kB 00:00 (147/155): tre-common-0.8.0-41.20140228gitc2f5d 2.2 MB/s | 31 kB 00:00 (148/155): tzdata-java-2023c-3.fc40.noarch.rpm 19 MB/s | 48 kB 00:00 (149/155): tre-devel-0.8.0-41.20140228gitc2f5d1 963 kB/s | 12 kB 00:00 (150/155): xml-common-0.6.3-61.fc39.noarch.rpm 8.4 MB/s | 31 kB 00:00 (151/155): xdg-utils-1.1.3-15.fc40.noarch.rpm 6.1 MB/s | 77 kB 00:00 (152/155): xorg-x11-fonts-Type1-7.5-36.fc39.noa 72 MB/s | 504 kB 00:00 (153/155): xorg-x11-proto-devel-2023.2-3.fc40.n 65 MB/s | 298 kB 00:00 (154/155): xz-devel-5.4.4-1.fc39.aarch64.rpm 11 MB/s | 66 kB 00:00 (155/155): python3-libs-3.12.0~rc2-1.fc40.aarch 1.9 MB/s | 9.1 MB 00:04 -------------------------------------------------------------------------------- Total 41 MB/s | 253 MB 00:06 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.aarch64 1/1 Preparing : 1/1 Installing : zlib-ng-compat-devel-2.1.3-4.fc40.aarch64 1/155 Installing : nspr-4.35.0-13.fc40.aarch64 2/155 Installing : libgfortran-13.2.1-1.fc40.aarch64 3/155 Installing : nss-util-3.93.0-2.fc40.aarch64 4/155 Installing : xorg-x11-proto-devel-2023.2-3.fc40.noarch 5/155 Installing : libpng-2:1.6.37-15.fc39.aarch64 6/155 Installing : libmpc-1.3.1-3.fc39.aarch64 7/155 Installing : libicu-73.2-2.fc39.aarch64 8/155 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 9/155 Installing : tcl-1:8.6.13-1.fc40.aarch64 10/155 Installing : tcl-devel-1:8.6.13-1.fc40.aarch64 11/155 Installing : libicu-devel-73.2-2.fc39.aarch64 12/155 Installing : xz-devel-5.4.4-1.fc39.aarch64 13/155 Installing : openblas-0.3.21-6.fc39.aarch64 14/155 Installing : libjpeg-turbo-2.1.4-3.fc39.aarch64 15/155 Installing : libXau-1.0.11-4.fc40.aarch64 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zlib-ng-compat-devel-2.1.3-4.fc40.aarch64 39/155 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 40/155 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 41/155 Verifying : alsa-lib-1.2.10-3.fc40.aarch64 42/155 Verifying : annobin-docs-12.26-1.fc40.noarch 43/155 Verifying : annobin-plugin-gcc-12.26-1.fc40.aarch64 44/155 Verifying : avahi-libs-0.8-24.fc39.aarch64 45/155 Verifying : brotli-1.1.0-1.fc40.aarch64 46/155 Verifying : brotli-devel-1.1.0-1.fc40.aarch64 47/155 Verifying : bzip2-devel-1.0.8-16.fc39.aarch64 48/155 Verifying : cmake-filesystem-3.27.4-8.fc40.aarch64 49/155 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 50/155 Verifying : crypto-policies-scripts-20230731-1.git5ed06e0.fc 51/155 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 52/155 Verifying : default-fonts-core-sans-4.0-9.fc40.noarch 53/155 Verifying : desktop-file-utils-0.26-9.fc39.aarch64 54/155 Verifying : expat-2.5.0-3.fc39.aarch64 55/155 Verifying : flexiblas-3.3.1-5.fc39.aarch64 56/155 Verifying : flexiblas-devel-3.3.1-5.fc39.aarch64 57/155 Verifying : flexiblas-netlib-3.3.1-5.fc39.aarch64 58/155 Verifying : flexiblas-netlib64-3.3.1-5.fc39.aarch64 59/155 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 60/155 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc39.aarch64 61/155 Verifying : fontconfig-2.14.2-5.fc40.aarch64 62/155 Verifying : fontconfig-devel-2.14.2-5.fc40.aarch64 63/155 Verifying : fonts-filesystem-1:2.0.5-12.fc39.noarch 64/155 Verifying : fribidi-1.0.13-2.fc39.aarch64 65/155 Verifying : gc-8.2.2-4.fc39.aarch64 66/155 Verifying : gettext-0.22-2.fc39.aarch64 67/155 Verifying : gettext-envsubst-0.22-2.fc39.aarch64 68/155 Verifying : gettext-libs-0.22-2.fc39.aarch64 69/155 Verifying : gettext-runtime-0.22-2.fc39.aarch64 70/155 Verifying : glib2-2.78.0-2.fc40.aarch64 71/155 Verifying : glib2-devel-2.78.0-2.fc40.aarch64 72/155 Verifying : glibc-devel-2.38.9000-9.fc40.aarch64 73/155 Verifying : gnutls-3.8.1-1.fc40.aarch64 74/155 Verifying : google-noto-fonts-common-20230801-3.fc40.noarch 75/155 Verifying : google-noto-sans-vf-fonts-20230801-3.fc40.noarch 76/155 Verifying : graphite2-1.3.14-12.fc39.aarch64 77/155 Verifying : graphite2-devel-1.3.14-12.fc39.aarch64 78/155 Verifying : guile22-2.2.7-9.fc39.aarch64 79/155 Verifying : harfbuzz-8.2.0-1.fc40.aarch64 80/155 Verifying : harfbuzz-devel-8.2.0-1.fc40.aarch64 81/155 Verifying : harfbuzz-icu-8.2.0-1.fc40.aarch64 82/155 Verifying : java-17-openjdk-1:17.0.8.0.7-1.fc39.aarch64 83/155 Verifying : java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.aarch6 84/155 Verifying : java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.aar 85/155 Verifying : javapackages-filesystem-6.2.0-3.fc40.noarch 86/155 Verifying : jbigkit-libs-2.1-26.fc39.aarch64 87/155 Verifying : kernel-headers-6.6.0-0.rc2.git0.1.fc40.aarch64 88/155 Verifying : libICE-1.0.10-12.fc40.aarch64 89/155 Verifying : libSM-1.2.3-14.fc40.aarch64 90/155 Verifying : libX11-1.8.6-3.fc40.aarch64 91/155 Verifying : libX11-common-1.8.6-3.fc40.noarch 92/155 Verifying : libX11-devel-1.8.6-3.fc40.aarch64 93/155 Verifying : libX11-xcb-1.8.6-3.fc40.aarch64 94/155 Verifying : libXau-1.0.11-4.fc40.aarch64 95/155 Verifying : libXau-devel-1.0.11-4.fc40.aarch64 96/155 Verifying : libXcomposite-0.4.5-11.fc40.aarch64 97/155 Verifying : libXext-1.3.5-3.fc39.aarch64 98/155 Verifying : libXft-2.3.8-4.fc40.aarch64 99/155 Verifying : libXft-devel-2.3.8-4.fc40.aarch64 100/155 Verifying : libXi-1.8.1-3.fc40.aarch64 101/155 Verifying : libXmu-1.1.4-4.fc40.aarch64 102/155 Verifying : libXrender-0.9.11-4.fc40.aarch64 103/155 Verifying : libXrender-devel-0.9.11-4.fc40.aarch64 104/155 Verifying : libXt-1.2.1-6.fc40.aarch64 105/155 Verifying : libXtst-1.2.4-3.fc39.aarch64 106/155 Verifying : libb2-0.98.1-9.fc39.aarch64 107/155 Verifying : libdatrie-0.2.13-7.fc39.aarch64 108/155 Verifying : libffi-devel-3.4.4-4.fc39.aarch64 109/155 Verifying : libicu-73.2-2.fc39.aarch64 110/155 Verifying : libicu-devel-73.2-2.fc39.aarch64 111/155 Verifying : libjpeg-turbo-2.1.4-3.fc39.aarch64 112/155 Verifying : liblerc-4.0.0-4.fc39.aarch64 113/155 Verifying : libmpc-1.3.1-3.fc39.aarch64 114/155 Verifying : libpng-2:1.6.37-15.fc39.aarch64 115/155 Verifying : libpng-devel-2:1.6.37-15.fc39.aarch64 116/155 Verifying : libselinux-devel-3.5-5.fc39.aarch64 117/155 Verifying : libsepol-devel-3.5-2.fc39.aarch64 118/155 Verifying : libthai-0.1.29-6.fc39.aarch64 119/155 Verifying : libtirpc-devel-1.3.3-1.rc2.fc39.aarch64 120/155 Verifying : libtool-ltdl-2.4.7-8.fc40.aarch64 121/155 Verifying : libwebp-1.3.2-1.fc40.aarch64 122/155 Verifying : libxcb-1.13.1-12.fc39.aarch64 123/155 Verifying : libxcb-devel-1.13.1-12.fc39.aarch64 124/155 Verifying : libxcrypt-devel-4.4.36-2.fc39.aarch64 125/155 Verifying : lksctp-tools-1.0.19-4.fc39.aarch64 126/155 Verifying : lua-5.4.6-3.fc39.aarch64 127/155 Verifying : lua-posix-36.2.1-3.fc39.aarch64 128/155 Verifying : make-1:4.4.1-2.fc39.aarch64 129/155 Verifying : mpdecimal-2.5.1-7.fc39.aarch64 130/155 Verifying : nettle-3.9.1-2.fc39.aarch64 131/155 Verifying : openblas-0.3.21-6.fc39.aarch64 132/155 Verifying : openblas-openmp-0.3.21-6.fc39.aarch64 133/155 Verifying : openblas-openmp64-0.3.21-6.fc39.aarch64 134/155 Verifying : pango-1.51.0-1.fc40.aarch64 135/155 Verifying : pcre2-devel-10.42-1.fc39.2.aarch64 136/155 Verifying : pcre2-utf16-10.42-1.fc39.2.aarch64 137/155 Verifying : pcre2-utf32-10.42-1.fc39.2.aarch64 138/155 Verifying : pixman-0.42.2-2.fc39.aarch64 139/155 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 140/155 Verifying : python3-3.12.0~rc2-1.fc40.aarch64 141/155 Verifying : python3-libs-3.12.0~rc2-1.fc40.aarch64 142/155 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 143/155 Verifying : sysprof-capture-devel-3.48.0-2.fc39.aarch64 144/155 Verifying : tk-1:8.6.13-1.fc40.aarch64 145/155 Verifying : tk-devel-1:8.6.13-1.fc40.aarch64 146/155 Verifying : tre-0.8.0-41.20140228gitc2f5d13.fc39.aarch64 147/155 Verifying : tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noar 148/155 Verifying : tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.aarch 149/155 Verifying : tzdata-java-2023c-3.fc40.noarch 150/155 Verifying : xdg-utils-1.1.3-15.fc40.noarch 151/155 Verifying : xml-common-0.6.3-61.fc39.noarch 152/155 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 153/155 Verifying : xorg-x11-proto-devel-2023.2-3.fc40.noarch 154/155 Verifying : xz-devel-5.4.4-1.fc39.aarch64 155/155 Installed: R-core-4.3.1-3.fc40.aarch64 R-core-devel-4.3.1-3.fc40.aarch64 R-devel-4.3.1-3.fc40.aarch64 R-java-4.3.1-3.fc40.aarch64 R-java-devel-4.3.1-3.fc40.aarch64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.10-3.fc40.aarch64 annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.aarch64 avahi-libs-0.8-24.fc39.aarch64 brotli-1.1.0-1.fc40.aarch64 brotli-devel-1.1.0-1.fc40.aarch64 bzip2-devel-1.0.8-16.fc39.aarch64 cairo-1.17.8-5.fc40.aarch64 cmake-filesystem-3.27.4-8.fc40.aarch64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-1.fc40.aarch64 crypto-policies-scripts-20230731-1.git5ed06e0.fc39.noarch cups-libs-1:2.4.6-6.fc40.aarch64 dbus-libs-1:1.14.10-1.fc40.aarch64 default-fonts-core-sans-4.0-9.fc40.noarch desktop-file-utils-0.26-9.fc39.aarch64 emacs-filesystem-1:29.1-1.fc40.noarch expat-2.5.0-3.fc39.aarch64 flexiblas-3.3.1-5.fc39.aarch64 flexiblas-devel-3.3.1-5.fc39.aarch64 flexiblas-netlib-3.3.1-5.fc39.aarch64 flexiblas-netlib64-3.3.1-5.fc39.aarch64 flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 flexiblas-openblas-openmp64-3.3.1-5.fc39.aarch64 fontconfig-2.14.2-5.fc40.aarch64 fontconfig-devel-2.14.2-5.fc40.aarch64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc40.aarch64 freetype-devel-2.13.1-2.fc40.aarch64 fribidi-1.0.13-2.fc39.aarch64 gc-8.2.2-4.fc39.aarch64 gcc-13.2.1-1.fc40.aarch64 gcc-c++-13.2.1-1.fc40.aarch64 gcc-gfortran-13.2.1-1.fc40.aarch64 gcc-plugin-annobin-13.2.1-1.fc40.aarch64 gettext-0.22-2.fc39.aarch64 gettext-envsubst-0.22-2.fc39.aarch64 gettext-libs-0.22-2.fc39.aarch64 gettext-runtime-0.22-2.fc39.aarch64 glib2-2.78.0-2.fc40.aarch64 glib2-devel-2.78.0-2.fc40.aarch64 glibc-devel-2.38.9000-9.fc40.aarch64 gnutls-3.8.1-1.fc40.aarch64 google-noto-fonts-common-20230801-3.fc40.noarch google-noto-sans-vf-fonts-20230801-3.fc40.noarch graphite2-1.3.14-12.fc39.aarch64 graphite2-devel-1.3.14-12.fc39.aarch64 guile22-2.2.7-9.fc39.aarch64 harfbuzz-8.2.0-1.fc40.aarch64 harfbuzz-devel-8.2.0-1.fc40.aarch64 harfbuzz-icu-8.2.0-1.fc40.aarch64 java-17-openjdk-1:17.0.8.0.7-1.fc39.aarch64 java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.aarch64 java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.aarch64 javapackages-filesystem-6.2.0-3.fc40.noarch jbigkit-libs-2.1-26.fc39.aarch64 kernel-headers-6.6.0-0.rc2.git0.1.fc40.aarch64 libICE-1.0.10-12.fc40.aarch64 libRmath-4.3.1-3.fc40.aarch64 libRmath-devel-4.3.1-3.fc40.aarch64 libSM-1.2.3-14.fc40.aarch64 libX11-1.8.6-3.fc40.aarch64 libX11-common-1.8.6-3.fc40.noarch libX11-devel-1.8.6-3.fc40.aarch64 libX11-xcb-1.8.6-3.fc40.aarch64 libXau-1.0.11-4.fc40.aarch64 libXau-devel-1.0.11-4.fc40.aarch64 libXcomposite-0.4.5-11.fc40.aarch64 libXext-1.3.5-3.fc39.aarch64 libXft-2.3.8-4.fc40.aarch64 libXft-devel-2.3.8-4.fc40.aarch64 libXi-1.8.1-3.fc40.aarch64 libXmu-1.1.4-4.fc40.aarch64 libXrender-0.9.11-4.fc40.aarch64 libXrender-devel-0.9.11-4.fc40.aarch64 libXt-1.2.1-6.fc40.aarch64 libXtst-1.2.4-3.fc39.aarch64 libasan-13.2.1-1.fc40.aarch64 libatomic-13.2.1-1.fc40.aarch64 libb2-0.98.1-9.fc39.aarch64 libblkid-devel-2.39.2-1.fc40.aarch64 libcurl-devel-8.3.0-1.fc40.aarch64 libdatrie-0.2.13-7.fc39.aarch64 libffi-devel-3.4.4-4.fc39.aarch64 libfontenc-1.1.6-3.fc40.aarch64 libgfortran-13.2.1-1.fc40.aarch64 libicu-73.2-2.fc39.aarch64 libicu-devel-73.2-2.fc39.aarch64 libjpeg-turbo-2.1.4-3.fc39.aarch64 liblerc-4.0.0-4.fc39.aarch64 libmount-devel-2.39.2-1.fc40.aarch64 libmpc-1.3.1-3.fc39.aarch64 libpng-2:1.6.37-15.fc39.aarch64 libpng-devel-2:1.6.37-15.fc39.aarch64 libselinux-devel-3.5-5.fc39.aarch64 libsepol-devel-3.5-2.fc39.aarch64 libstdc++-devel-13.2.1-1.fc40.aarch64 libthai-0.1.29-6.fc39.aarch64 libtiff-4.4.0-8.fc40.aarch64 libtirpc-devel-1.3.3-1.rc2.fc39.aarch64 libtool-ltdl-2.4.7-8.fc40.aarch64 libubsan-13.2.1-1.fc40.aarch64 libwebp-1.3.2-1.fc40.aarch64 libxcb-1.13.1-12.fc39.aarch64 libxcb-devel-1.13.1-12.fc39.aarch64 libxcrypt-devel-4.4.36-2.fc39.aarch64 libxml2-devel-2.11.5-1.fc40.aarch64 lksctp-tools-1.0.19-4.fc39.aarch64 lua-5.4.6-3.fc39.aarch64 lua-posix-36.2.1-3.fc39.aarch64 make-1:4.4.1-2.fc39.aarch64 mkfontscale-1.2.2-4.fc40.aarch64 mpdecimal-2.5.1-7.fc39.aarch64 nettle-3.9.1-2.fc39.aarch64 nspr-4.35.0-13.fc40.aarch64 nss-3.93.0-2.fc40.aarch64 nss-softokn-3.93.0-2.fc40.aarch64 nss-softokn-freebl-3.93.0-2.fc40.aarch64 nss-sysinit-3.93.0-2.fc40.aarch64 nss-util-3.93.0-2.fc40.aarch64 openblas-0.3.21-6.fc39.aarch64 openblas-openmp-0.3.21-6.fc39.aarch64 openblas-openmp64-0.3.21-6.fc39.aarch64 pango-1.51.0-1.fc40.aarch64 pcre2-devel-10.42-1.fc39.2.aarch64 pcre2-utf16-10.42-1.fc39.2.aarch64 pcre2-utf32-10.42-1.fc39.2.aarch64 pixman-0.42.2-2.fc39.aarch64 python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.0~rc2-1.fc40.aarch64 python3-libs-3.12.0~rc2-1.fc40.aarch64 python3-setuptools-67.7.2-7.fc40.noarch sysprof-capture-devel-3.48.0-2.fc39.aarch64 tcl-1:8.6.13-1.fc40.aarch64 tcl-devel-1:8.6.13-1.fc40.aarch64 tk-1:8.6.13-1.fc40.aarch64 tk-devel-1:8.6.13-1.fc40.aarch64 tre-0.8.0-41.20140228gitc2f5d13.fc39.aarch64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.aarch64 ttmkfdir-3.0.9-69.fc40.aarch64 tzdata-java-2023c-3.fc40.noarch xdg-utils-1.1.3-15.fc40.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xz-devel-5.4.4-1.fc39.aarch64 zlib-ng-compat-devel-2.1.3-4.fc40.aarch64 Complete! Finish: build setup for R-Rhtslib-1.28.0-4.fc40.src.rpm Start: rpmbuild R-Rhtslib-1.28.0-4.fc40.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.o8vFLP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Rhtslib + /usr/bin/mkdir -p Rhtslib + cd Rhtslib + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rhtslib_1.28.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (R-Rhtslib-zlibbioc.patch):' Patch #0 (R-Rhtslib-zlibbioc.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .zlibbioc --fuzz=0 patching file Rhtslib/DESCRIPTION patching file Rhtslib/NAMESPACE Patch #1 (R-Rhtslib-buildroot-fix.patch): + echo 'Patch #1 (R-Rhtslib-buildroot-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fix --fuzz=0 patching file Rhtslib/src/Makevars.common + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.g2KLWU + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BwP5ZR + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + mkdir -p /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library Rhtslib * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs using C compiler: ‘gcc (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)’ cd "htslib-1.7" && make -f "/usr/lib64/R/etc/Makeconf" -f "Makefile.Rhtslib" make[1]: Entering directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.7' Makefile.Rhtslib:131: warning: overriding recipe for target '.c.o' /usr/lib64/R/etc/Makeconf:191: warning: ignoring old recipe for target '.c.o' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.o knetfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.7"' > version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c hts.c: In function ‘hts_idx_init’: hts.c:1366:59: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int’ changes value from ‘idx->z.last_bin = 4294967295’ to ‘-1’ [-Woverflow] 1366 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c In file included from ./textutils_internal.h:32, from ./hts_internal.h:31, from cram/cram_index.c:65: In function ‘kputsn’, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: ./htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ~~~~~~~~~~~^~~ In file included from /usr/include/string.h:548, from cram/cram_index.c:57: In function ‘memcpy’, inlined from ‘kputsn’ at ./htslib/kstring.h:148:2, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c cram/cram_io.c: In function ‘cram_populate_ref’: cram/cram_io.c:2071:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 2071 | strncpy(path, path2, PATH_MAX); | ^ cram/cram_io.c:2178:34: warning: ‘.tmp_’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2178 | sprintf(path_tmp, "%s.tmp_%d_%u_%u", path, pid, thrid, t); | ^~~~~ In file included from /usr/include/stdio.h:964, from cram/cram_io.c:49: In function ‘sprintf’, inlined from ‘cram_populate_ref’ at cram/cram_io.c:2178:6: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 4134 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_io.c: In function ‘cram_write_SAM_hdr’: cram/cram_io.c:3677:13: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3677 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:4055:9: warning: ‘strncpy’ specified bound 20 equals destination size [-Wstringop-truncation] 4055 | strncpy(def->file_id, filename, 20); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.o cram/files.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.o cram/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.o cram/sam_header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1187:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1187 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:45: /usr/include/curl/curl.h:2883:3: note: declared here 2883 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o ranlib libhts.a gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.pico knetfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.pico hfile_net.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c hts.c: In function ‘hts_idx_init’: hts.c:1366:59: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int’ changes value from ‘idx->z.last_bin = 4294967295’ to ‘-1’ [-Woverflow] 1366 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c In file included from ./textutils_internal.h:32, from ./hts_internal.h:31, from cram/cram_index.c:65: In function ‘kputsn’, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: ./htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ~~~~~~~~~~~^~~ In file included from /usr/include/string.h:548, from cram/cram_index.c:57: In function ‘memcpy’, inlined from ‘kputsn’ at ./htslib/kstring.h:148:2, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c cram/cram_io.c: In function ‘cram_populate_ref’: cram/cram_io.c:2071:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 2071 | strncpy(path, path2, PATH_MAX); | ^ cram/cram_io.c:2178:34: warning: ‘.tmp_’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2178 | sprintf(path_tmp, "%s.tmp_%d_%u_%u", path, pid, thrid, t); | ^~~~~ In file included from /usr/include/stdio.h:964, from cram/cram_io.c:49: In function ‘sprintf’, inlined from ‘cram_populate_ref’ at cram/cram_io.c:2178:6: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 4134 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_io.c: In function ‘cram_write_SAM_hdr’: cram/cram_io.c:3677:13: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3677 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:4055:9: warning: ‘strncpy’ specified bound 20 equals destination size [-Wstringop-truncation] 4055 | strncpy(def->file_id, filename, 20); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.pico cram/cram_samtools.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.pico cram/files.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.pico cram/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.pico cram/sam_header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1187:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1187 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:45: /usr/include/curl/curl.h:2883:3: note: declared here 2883 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread In function ‘kputsn’, inlined from ‘kputs’ at htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ^ In function ‘memcpy’, inlined from ‘kputsn’ at htslib/kstring.h:148:2, inlined from ‘kputs’ at htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ ln -sf libhts.so libhts.so.2 make[1]: Leaving directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.7' mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/include/htslib" cd "htslib-1.7/htslib" && cp * "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/include/htslib" && cd .. && cp textutils_internal.h hts_internal.h "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/include" gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ihtslib-1.7 -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/usrlib" cd "htslib-1.7" && cp libhts.so libhts.a "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/usrlib" cd "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rhtslib.so R_init_Rhtslib.o /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/usr/lib64/R/lib -lR In function ‘kputsn’, inlined from ‘kputs’ at htslib-1.7/./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at htslib-1.7/cram/cram_index.c:571:9: htslib-1.7/./htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ^ In function ‘memcpy’, inlined from ‘kputsn’ at htslib-1.7/./htslib/kstring.h:148:2, inlined from ‘kputs’ at htslib-1.7/./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at htslib-1.7/cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/testdata/tabix" cd "htslib-1.7/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhtslib’ finding HTML links ... done Rhtslib-package html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib) + test -d Rhtslib/src + cd Rhtslib/src + rm -f R_init_Rhtslib.o Rhtslib.so + rm -f /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.28.0-4.fc40 --unique-debug-suffix -1.28.0-4.fc40.aarch64 --unique-debug-src-base R-Rhtslib-1.28.0-4.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Rhtslib find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rhtslib-1.28.0-4.fc40.aarch64 3112 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.rrRE47 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rhtslib-1.28.0-4.fc40.aarch64 Provides: R(Rhtslib) = 1.28.0 R-Rhtslib = 1.28.0-4.fc40 R-Rhtslib(aarch-64) = 1.28.0-4.fc40 libhts.so.2()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.3 R-core ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libcurl.so.4()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) rtld(GNU_HASH) Suggests: R(BiocStyle) R(knitr) R(rmarkdown) Processing files: R-Rhtslib-devel-1.28.0-4.fc40.aarch64 Provides: R-Rhtslib-devel = 1.28.0-4.fc40 R-Rhtslib-devel(aarch-64) = 1.28.0-4.fc40 R-Rhtslib-static = 1.28.0-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debugsource-1.28.0-4.fc40.aarch64 Provides: R-Rhtslib-debugsource = 1.28.0-4.fc40 R-Rhtslib-debugsource(aarch-64) = 1.28.0-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debuginfo-1.28.0-4.fc40.aarch64 Provides: R-Rhtslib-debuginfo = 1.28.0-4.fc40 R-Rhtslib-debuginfo(aarch-64) = 1.28.0-4.fc40 debuginfo(build-id) = 3df07b3a326099fdc15a485eef751686dbd277f9 debuginfo(build-id) = e3e627e16e79516194c38cc44b09220acf4b3319 libhts.so-1.28.0-4.fc40.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rhtslib-debugsource(aarch-64) = 1.28.0-4.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64 Wrote: /builddir/build/RPMS/R-Rhtslib-devel-1.28.0-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debugsource-1.28.0-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debuginfo-1.28.0-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-1.28.0-4.fc40.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3bWNRM + umask 022 + cd /builddir/build/BUILD + cd Rhtslib + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.rfGPvl + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + rm -rf Rhtslib Rhtslib.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild R-Rhtslib-1.28.0-4.fc40.src.rpm Finish: build phase for R-Rhtslib-1.28.0-4.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1695197320.022112/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rhtslib-1.28.0-4.fc40.src.rpm) Config(child) 1 minutes 19 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rhtslib", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "src" }, { "name": "R-Rhtslib-debugsource", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "aarch64" }, { "name": "R-Rhtslib", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "aarch64" }, { "name": "R-Rhtslib-devel", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "aarch64" }, { "name": "R-Rhtslib-debuginfo", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "aarch64" } ] } RPMResults finished