Warning: Permanently added '162.133.141.237' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408207-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 0.69
PID: 5766
Logging PID: 5767
Task:
{'appstream': False,
 'background': True,
 'build_id': 6408207,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '2586c48e65d92db308ab7ffa92c1d46524e9837f',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-16',
 'project_dirname': 'zlib-ng-compat-mpb',
 'project_name': 'zlib-ng-compat-mpb',
 'project_owner': 'tuliom',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
 'source_json': {},
 'source_type': None,
 'submitter': 'tuliom',
 'tags': [],
 'task_id': '6408207-fedora-rawhide-s390x',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq /var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq'...

Running: git checkout 2586c48e65d92db308ab7ffa92c1d46524e9837f --

cmd: ['git', 'checkout', '2586c48e65d92db308ab7ffa92c1d46524e9837f', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq
rc: 0
stdout: 
stderr: Note: switching to '2586c48e65d92db308ab7ffa92c1d46524e9837f'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 2586c48 automatic import of mmseq

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0   427k      0  0:00:06  0:00:06 --:--:--  644k
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695081486.692554 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq/mmseq.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695081486.692554/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695081486.692554/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/e9b44bbd1d17ea82ed1e0b70d4b6605c8df9a8e45d59034bf307f8619d27a60f/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/e9b44bbd1d17ea82ed1e0b70d4b6605c8df9a8e45d59034bf307f8619d27a60f/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 7.6 MB/s | 5.2 MB     00:00    
fedora                                           11 MB/s |  63 MB     00:05    
Last metadata expiration check: 0:00:02 ago on Mon Sep 18 23:58:27 2023.
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch       Version               Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch     4.4.2-1.fc39          fedora     293 k
Installing dependencies:
 dbus-libs                    s390x      1:1.14.10-1.fc40      fedora     159 k
 python3-dateutil             noarch     1:2.8.2-10.fc39       fedora     355 k
 python3-dbus                 s390x      1.3.2-4.fc39          fedora     157 k
 python3-distro               noarch     1.8.0-6.fc39          fedora      49 k
 python3-six                  noarch     1.16.0-12.fc39        fedora      41 k
 python3-systemd              s390x      235-5.fc39            fedora     106 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.1 M
Installed size: 3.5 M
Downloading Packages:
(1/7): dbus-libs-1.14.10-1.fc40.s390x.rpm       177 kB/s | 159 kB     00:00    
(2/7): python3-dbus-1.3.2-4.fc39.s390x.rpm      175 kB/s | 157 kB     00:00    
(3/7): python3-distro-1.8.0-6.fc39.noarch.rpm   259 kB/s |  49 kB     00:00    
(4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 327 kB/s | 355 kB     00:01    
(5/7): python3-six-1.16.0-12.fc39.noarch.rpm    203 kB/s |  41 kB     00:00    
(6/7): python3-systemd-235-5.fc39.s390x.rpm     525 kB/s | 106 kB     00:00    
(7/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 745 kB/s | 293 kB     00:00    
--------------------------------------------------------------------------------
Total                                           484 kB/s | 1.1 MB     00:02     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.s390x                       1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-10.fc39.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.s390x                       5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.s390x                        6/7 
  Installing       : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Verifying        : dbus-libs-1:1.14.10-1.fc40.s390x                       1/7 
  Verifying        : python3-dateutil-1:2.8.2-10.fc39.noarch                2/7 
  Verifying        : python3-dbus-1.3.2-4.fc39.s390x                        3/7 
  Verifying        : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Verifying        : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           5/7 
  Verifying        : python3-six-1.16.0-12.fc39.noarch                      6/7 
  Verifying        : python3-systemd-235-5.fc39.s390x                       7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.s390x                                              
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-dbus-1.3.2-4.fc39.s390x                                               
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.s390x                                              

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 853 kB/s | 5.2 MB     00:06    
fedora                                           11 MB/s |  63 MB     00:05    
Last metadata expiration check: 0:00:01 ago on Mon Sep 18 23:59:16 2023.
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                         s390x  5.2.15-5.fc39              fedora    1.8 M
 bzip2                        s390x  1.0.8-16.fc39              fedora     53 k
 coreutils                    s390x  9.4-1.fc40                 fedora    1.2 M
 cpio                         s390x  2.14-4.fc39                fedora    283 k
 diffutils                    s390x  3.10-3.fc39                fedora    407 k
 fedora-release-common        noarch 40-0.7                     fedora     18 k
 findutils                    s390x  1:4.9.0-6.fc40             fedora    497 k
 gawk                         s390x  5.2.2-2.fc39               fedora    1.1 M
 glibc-minimal-langpack       s390x  2.38.9000-8.fc40           copr_base  73 k
 grep                         s390x  3.11-5.fc40                fedora    305 k
 gzip                         s390x  1.12-6.fc39                fedora    173 k
 info                         s390x  7.0.3-3.fc39               fedora    192 k
 patch                        s390x  2.7.6-22.fc39              fedora    134 k
 redhat-rpm-config            noarch 270-1.fc40                 copr_base  74 k
 rpm-build                    s390x  4.18.99-1.fc40             fedora     78 k
 sed                          s390x  4.8-14.fc39                fedora    309 k
 shadow-utils                 s390x  2:4.14.0-1.fc40            fedora    1.3 M
 tar                          s390x  2:1.35-2.fc40              fedora    874 k
 unzip                        s390x  6.0-62.fc39                fedora    194 k
 util-linux                   s390x  2.39.2-1.fc40              copr_base 1.1 M
 which                        s390x  2.21-40.fc39               fedora     43 k
 xz                           s390x  5.4.4-1.fc39               fedora    557 k
Installing dependencies:
 alternatives                 s390x  1.25-1.fc39                fedora     39 k
 ansible-srpm-macros          noarch 1-11.fc39                  fedora     21 k
 audit-libs                   s390x  3.1.2-4.fc40               fedora    121 k
 authselect                   s390x  1.4.2-3.fc39               fedora    144 k
 authselect-libs              s390x  1.4.2-3.fc39               fedora    247 k
 basesystem                   noarch 11-18.fc39                 fedora    7.2 k
 binutils                     s390x  2.41-5.fc40                copr_base 5.9 M
 binutils-gold                s390x  2.41-5.fc40                copr_base 993 k
 bzip2-libs                   s390x  1.0.8-16.fc39              fedora     46 k
 ca-certificates              noarch 2023.2.60_v7.0.306-3.fc40  fedora    837 k
 coreutils-common             s390x  9.4-1.fc40                 fedora    2.1 M
 cracklib                     s390x  2.9.11-2.fc40              copr_base  84 k
 crypto-policies              noarch 20230731-1.git5ed06e0.fc39 fedora     99 k
 curl                         s390x  8.3.0-1.fc40               copr_base 354 k
 cyrus-sasl-lib               s390x  2.1.28-11.fc40             copr_base 820 k
 debugedit                    s390x  5.0-10.fc39                fedora     81 k
 dwz                          s390x  0.15-3.fc39                fedora    144 k
 ed                           s390x  1.19-4.fc39                fedora     80 k
 efi-srpm-macros              noarch 5-9.fc39                   fedora     22 k
 elfutils                     s390x  0.189-6.fc40               copr_base 555 k
 elfutils-debuginfod-client   s390x  0.189-6.fc40               copr_base  39 k
 elfutils-default-yama-scope  noarch 0.189-6.fc40               copr_base  14 k
 elfutils-libelf              s390x  0.189-6.fc40               copr_base 201 k
 elfutils-libs                s390x  0.189-6.fc40               copr_base 275 k
 fedora-gpg-keys              noarch 40-0.1                     fedora    130 k
 fedora-release               noarch 40-0.7                     fedora    8.0 k
 fedora-release-identity-basic
                              noarch 40-0.7                     fedora    8.8 k
 fedora-repos                 noarch 40-0.1                     fedora    9.4 k
 fedora-repos-rawhide         noarch 40-0.1                     fedora    9.0 k
 file                         s390x  5.45-1.fc40                copr_base  50 k
 file-libs                    s390x  5.45-1.fc40                copr_base 770 k
 filesystem                   s390x  3.18-6.fc39                fedora    1.1 M
 fonts-srpm-macros            noarch 1:2.0.5-12.fc39            fedora     26 k
 forge-srpm-macros            noarch 0.1.0-1.fc40               fedora     18 k
 fpc-srpm-macros              noarch 1.3-8.fc39                 fedora    7.4 k
 gdb-minimal                  s390x  13.2-8.fc40                fedora    4.0 M
 gdbm-libs                    s390x  1:1.23-4.fc39              fedora     58 k
 ghc-srpm-macros              noarch 1.6.1-2.fc39               fedora    7.8 k
 glibc                        s390x  2.38.9000-8.fc40           copr_base 1.8 M
 glibc-common                 s390x  2.38.9000-8.fc40           copr_base 368 k
 glibc-gconv-extra            s390x  2.38.9000-8.fc40           copr_base 1.6 M
 gmp                          s390x  1:6.2.1-5.fc39             fedora    325 k
 gnat-srpm-macros             noarch 6-3.fc39                   fedora    8.8 k
 go-srpm-macros               noarch 3.2.0-7.fc40               fedora     27 k
 jansson                      s390x  2.13.1-7.fc39              fedora     44 k
 kernel-srpm-macros           noarch 1.0-20.fc39                fedora     10 k
 keyutils-libs                s390x  1.6.1-7.fc39               fedora     31 k
 krb5-libs                    s390x  1.21.2-1.fc40              fedora    780 k
 libacl                       s390x  2.3.1-9.fc40               fedora     24 k
 libarchive                   s390x  3.7.2-1.fc40               copr_base 441 k
 libattr                      s390x  2.5.1-9.fc40               fedora     18 k
 libblkid                     s390x  2.39.2-1.fc40              copr_base 121 k
 libbrotli                    s390x  1.1.0-1.fc40               fedora    379 k
 libcap                       s390x  2.48-7.fc39                fedora     69 k
 libcap-ng                    s390x  0.8.3-8.fc40               fedora     32 k
 libcom_err                   s390x  1.47.0-2.fc39              fedora     26 k
 libcurl                      s390x  8.3.0-1.fc40               copr_base 362 k
 libdb                        s390x  5.3.28-58.fc40             copr_base 775 k
 libeconf                     s390x  0.5.2-1.fc40               fedora     32 k
 libevent                     s390x  2.1.12-9.fc39              fedora    260 k
 libfdisk                     s390x  2.39.2-1.fc40              copr_base 166 k
 libffi                       s390x  3.4.4-4.fc39               fedora     36 k
 libgcc                       s390x  13.2.1-1.fc40              copr_base  82 k
 libgomp                      s390x  13.2.1-1.fc40              copr_base 323 k
 libidn2                      s390x  2.3.4-3.fc39               fedora    118 k
 libmount                     s390x  2.39.2-1.fc40              copr_base 159 k
 libnghttp2                   s390x  1.56.0-1.fc40              copr_base  78 k
 libnsl2                      s390x  2.0.0-6.fc39               fedora     30 k
 libpkgconf                   s390x  1.9.5-2.fc39               fedora     38 k
 libpsl                       s390x  0.21.2-4.fc39              fedora     63 k
 libpwquality                 s390x  1.4.5-6.fc39               fedora    121 k
 libselinux                   s390x  3.5-5.fc39                 fedora     91 k
 libsemanage                  s390x  3.5-4.fc39                 fedora    122 k
 libsepol                     s390x  3.5-2.fc39                 fedora    330 k
 libsigsegv                   s390x  2.14-5.fc39                fedora     27 k
 libsmartcols                 s390x  2.39.2-1.fc40              copr_base  70 k
 libssh                       s390x  0.10.5-2.fc39              fedora    209 k
 libssh-config                noarch 0.10.5-2.fc39              fedora    9.2 k
 libstdc++                    s390x  13.2.1-1.fc40              copr_base 949 k
 libtasn1                     s390x  4.19.0-3.fc39              fedora     77 k
 libtirpc                     s390x  1.3.3-1.rc2.fc39           fedora     95 k
 libunistring                 s390x  1.1-5.fc40                 fedora    556 k
 libutempter                  s390x  1.2.1-10.fc39              fedora     26 k
 libuuid                      s390x  2.39.2-1.fc40              copr_base  29 k
 libverto                     s390x  0.3.2-6.fc39               fedora     21 k
 libxcrypt                    s390x  4.4.36-2.fc39              fedora    124 k
 libxml2                      s390x  2.11.5-1.fc40              copr_base 711 k
 libzstd                      s390x  1.5.5-4.fc40               copr_base 343 k
 lua-libs                     s390x  5.4.6-3.fc39               fedora    142 k
 lua-srpm-macros              noarch 1-9.fc39                   fedora    8.6 k
 lz4-libs                     s390x  1.9.4-4.fc39               fedora     81 k
 mpfr                         s390x  4.2.0-3.fc39               fedora    298 k
 ncurses-base                 noarch 6.4-7.20230520.fc40        fedora     88 k
 ncurses-libs                 s390x  6.4-7.20230520.fc40        fedora    361 k
 ocaml-srpm-macros            noarch 8-2.fc39                   fedora     14 k
 openblas-srpm-macros         noarch 2-14.fc39                  fedora    7.5 k
 openldap                     s390x  2.6.6-1.fc39               fedora    262 k
 openssl-libs                 s390x  1:3.1.1-4.fc40             copr_base 1.9 M
 p11-kit                      s390x  0.25.0-2.fc39              fedora    507 k
 p11-kit-trust                s390x  0.25.0-2.fc39              fedora    141 k
 package-notes-srpm-macros    noarch 0.5-9.fc39                 fedora     11 k
 pam                          s390x  1.5.3-2.fc39               fedora    558 k
 pam-libs                     s390x  1.5.3-2.fc39               fedora     59 k
 pcre2                        s390x  10.42-1.fc39.2             fedora    250 k
 pcre2-syntax                 noarch 10.42-1.fc39.2             fedora    143 k
 perl-srpm-macros             noarch 1-51.fc39                  fedora    8.0 k
 pkgconf                      s390x  1.9.5-2.fc39               fedora     43 k
 pkgconf-m4                   noarch 1.9.5-2.fc39               fedora     14 k
 pkgconf-pkg-config           s390x  1.9.5-2.fc39               fedora    9.6 k
 popt                         s390x  1.19-3.fc39                fedora     69 k
 publicsuffix-list-dafsa      noarch 20230812-1.fc40            fedora     57 k
 pyproject-srpm-macros        noarch 1.9.0-2.fc39               fedora     14 k
 python-srpm-macros           noarch 3.12-4.fc40                fedora     25 k
 qt5-srpm-macros              noarch 5.15.10-2.fc39             fedora    8.3 k
 qt6-srpm-macros              noarch 6.5.2-2.fc39               fedora    9.2 k
 readline                     s390x  8.2-4.fc39                 fedora    229 k
 rpm                          s390x  4.18.99-1.fc40             fedora    538 k
 rpm-build-libs               s390x  4.18.99-1.fc40             fedora     97 k
 rpm-libs                     s390x  4.18.99-1.fc40             fedora    323 k
 rpm-sequoia                  s390x  1.5.0-1.fc40               fedora    1.0 M
 rust-srpm-macros             noarch 24-5.fc40                  fedora     12 k
 setup                        noarch 2.14.4-1.fc39              fedora    154 k
 sqlite-libs                  s390x  3.43.1-1.fc40              fedora    737 k
 systemd-libs                 s390x  254.1-2.fc40               fedora    696 k
 tzdata                       noarch 2023c-3.fc40               fedora    718 k
 util-linux-core              s390x  2.39.2-1.fc40              copr_base 483 k
 xxhash-libs                  s390x  0.8.2-1.fc39               fedora     37 k
 xz-libs                      s390x  5.4.4-1.fc39               fedora    114 k
 zip                          s390x  3.0-38.fc39                fedora    283 k
 zlib-ng-compat               s390x  2.1.3-3.fc40               copr_base  71 k
 zstd                         s390x  1.5.5-4.fc40               copr_base 506 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  153 Packages

Total download size: 53 M
Installed size: 181 M
Downloading Packages:
(1/153): cracklib-2.9.11-2.fc40.s390x.rpm       2.2 MB/s |  84 kB     00:00    
(2/153): binutils-gold-2.41-5.fc40.s390x.rpm     22 MB/s | 993 kB     00:00    
(3/153): curl-8.3.0-1.fc40.s390x.rpm             41 MB/s | 354 kB     00:00    
(4/153): cyrus-sasl-lib-2.1.28-11.fc40.s390x.rp 121 MB/s | 820 kB     00:00    
(5/153): elfutils-0.189-6.fc40.s390x.rpm         48 MB/s | 555 kB     00:00    
(6/153): elfutils-debuginfod-client-0.189-6.fc4 6.9 MB/s |  39 kB     00:00    
(7/153): elfutils-default-yama-scope-0.189-6.fc 4.3 MB/s |  14 kB     00:00    
(8/153): elfutils-libelf-0.189-6.fc40.s390x.rpm  30 MB/s | 201 kB     00:00    
(9/153): elfutils-libs-0.189-6.fc40.s390x.rpm    39 MB/s | 275 kB     00:00    
(10/153): file-5.45-1.fc40.s390x.rpm             13 MB/s |  50 kB     00:00    
(11/153): glibc-2.38.9000-8.fc40.s390x.rpm      123 MB/s | 1.8 MB     00:00    
(12/153): file-libs-5.45-1.fc40.s390x.rpm        33 MB/s | 770 kB     00:00    
(13/153): glibc-common-2.38.9000-8.fc40.s390x.r  39 MB/s | 368 kB     00:00    
(14/153): binutils-2.41-5.fc40.s390x.rpm         58 MB/s | 5.9 MB     00:00    
(15/153): glibc-minimal-langpack-2.38.9000-8.fc 9.1 MB/s |  73 kB     00:00    
(16/153): libarchive-3.7.2-1.fc40.s390x.rpm      86 MB/s | 441 kB     00:00    
(17/153): libblkid-2.39.2-1.fc40.s390x.rpm       21 MB/s | 121 kB     00:00    
(18/153): libcurl-8.3.0-1.fc40.s390x.rpm         29 MB/s | 362 kB     00:00    
(19/153): libdb-5.3.28-58.fc40.s390x.rpm         58 MB/s | 775 kB     00:00    
(20/153): libfdisk-2.39.2-1.fc40.s390x.rpm       41 MB/s | 166 kB     00:00    
(21/153): glibc-gconv-extra-2.38.9000-8.fc40.s3  47 MB/s | 1.6 MB     00:00    
(22/153): libgcc-13.2.1-1.fc40.s390x.rpm         15 MB/s |  82 kB     00:00    
(23/153): libnghttp2-1.56.0-1.fc40.s390x.rpm     23 MB/s |  78 kB     00:00    
(24/153): libgomp-13.2.1-1.fc40.s390x.rpm        42 MB/s | 323 kB     00:00    
(25/153): libmount-2.39.2-1.fc40.s390x.rpm       24 MB/s | 159 kB     00:00    
(26/153): libsmartcols-2.39.2-1.fc40.s390x.rpm   13 MB/s |  70 kB     00:00    
(27/153): libuuid-2.39.2-1.fc40.s390x.rpm       7.4 MB/s |  29 kB     00:00    
(28/153): libxml2-2.11.5-1.fc40.s390x.rpm       133 MB/s | 711 kB     00:00    
(29/153): libzstd-1.5.5-4.fc40.s390x.rpm         43 MB/s | 343 kB     00:00    
(30/153): libstdc++-13.2.1-1.fc40.s390x.rpm      59 MB/s | 949 kB     00:00    
(31/153): redhat-rpm-config-270-1.fc40.noarch.r  16 MB/s |  74 kB     00:00    
(32/153): util-linux-core-2.39.2-1.fc40.s390x.r  48 MB/s | 483 kB     00:00    
(33/153): util-linux-2.39.2-1.fc40.s390x.rpm     60 MB/s | 1.1 MB     00:00    
(34/153): zlib-ng-compat-2.1.3-3.fc40.s390x.rpm  12 MB/s |  71 kB     00:00    
(35/153): openssl-libs-3.1.1-4.fc40.s390x.rpm    65 MB/s | 1.9 MB     00:00    
(36/153): zstd-1.5.5-4.fc40.s390x.rpm           107 MB/s | 506 kB     00:00    
(37/153): ansible-srpm-macros-1-11.fc39.noarch.  45 kB/s |  21 kB     00:00    
(38/153): alternatives-1.25-1.fc39.s390x.rpm     72 kB/s |  39 kB     00:00    
(39/153): audit-libs-3.1.2-4.fc40.s390x.rpm     152 kB/s | 121 kB     00:00    
(40/153): basesystem-11-18.fc39.noarch.rpm       47 kB/s | 7.2 kB     00:00    
(41/153): authselect-1.4.2-3.fc39.s390x.rpm     267 kB/s | 144 kB     00:00    
(42/153): authselect-libs-1.4.2-3.fc39.s390x.rp 398 kB/s | 247 kB     00:00    
(43/153): bzip2-1.0.8-16.fc39.s390x.rpm         290 kB/s |  53 kB     00:00    
(44/153): bzip2-libs-1.0.8-16.fc39.s390x.rpm    274 kB/s |  46 kB     00:00    
(45/153): ca-certificates-2023.2.60_v7.0.306-3. 1.5 MB/s | 837 kB     00:00    
(46/153): bash-5.2.15-5.fc39.s390x.rpm          2.4 MB/s | 1.8 MB     00:00    
(47/153): coreutils-9.4-1.fc40.s390x.rpm        2.2 MB/s | 1.2 MB     00:00    
(48/153): cpio-2.14-4.fc39.s390x.rpm            1.7 MB/s | 283 kB     00:00    
(49/153): crypto-policies-20230731-1.git5ed06e0 624 kB/s |  99 kB     00:00    
(50/153): debugedit-5.0-10.fc39.s390x.rpm       533 kB/s |  81 kB     00:00    
(51/153): coreutils-common-9.4-1.fc40.s390x.rpm 5.0 MB/s | 2.1 MB     00:00    
(52/153): dwz-0.15-3.fc39.s390x.rpm             931 kB/s | 144 kB     00:00    
(53/153): diffutils-3.10-3.fc39.s390x.rpm       2.2 MB/s | 407 kB     00:00    
(54/153): ed-1.19-4.fc39.s390x.rpm              525 kB/s |  80 kB     00:00    
(55/153): efi-srpm-macros-5-9.fc39.noarch.rpm   150 kB/s |  22 kB     00:00    
(56/153): fedora-gpg-keys-40-0.1.noarch.rpm     807 kB/s | 130 kB     00:00    
(57/153): fedora-release-40-0.7.noarch.rpm       54 kB/s | 8.0 kB     00:00    
(58/153): fedora-release-common-40-0.7.noarch.r 123 kB/s |  18 kB     00:00    
(59/153): fedora-release-identity-basic-40-0.7.  58 kB/s | 8.8 kB     00:00    
(60/153): fedora-repos-40-0.1.noarch.rpm         63 kB/s | 9.4 kB     00:00    
(61/153): fedora-repos-rawhide-40-0.1.noarch.rp  61 kB/s | 9.0 kB     00:00    
(62/153): filesystem-3.18-6.fc39.s390x.rpm      4.6 MB/s | 1.1 MB     00:00    
(63/153): findutils-4.9.0-6.fc40.s390x.rpm      2.8 MB/s | 497 kB     00:00    
(64/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 178 kB/s |  26 kB     00:00    
(65/153): forge-srpm-macros-0.1.0-1.fc40.noarch 120 kB/s |  18 kB     00:00    
(66/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm  49 kB/s | 7.4 kB     00:00    
(67/153): gawk-5.2.2-2.fc39.s390x.rpm           5.3 MB/s | 1.1 MB     00:00    
(68/153): gdbm-libs-1.23-4.fc39.s390x.rpm       383 kB/s |  58 kB     00:00    
(69/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r  52 kB/s | 7.8 kB     00:00    
(70/153): gmp-6.2.1-5.fc39.s390x.rpm            1.9 MB/s | 325 kB     00:00    
(71/153): gnat-srpm-macros-6-3.fc39.noarch.rpm   60 kB/s | 8.8 kB     00:00    
(72/153): gdb-minimal-13.2-8.fc40.s390x.rpm     9.0 MB/s | 4.0 MB     00:00    
(73/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp 181 kB/s |  27 kB     00:00    
(74/153): grep-3.11-5.fc40.s390x.rpm            1.8 MB/s | 305 kB     00:00    
(75/153): gzip-1.12-6.fc39.s390x.rpm            1.1 MB/s | 173 kB     00:00    
(76/153): info-7.0.3-3.fc39.s390x.rpm           1.2 MB/s | 192 kB     00:00    
(77/153): jansson-2.13.1-7.fc39.s390x.rpm       294 kB/s |  44 kB     00:00    
(78/153): kernel-srpm-macros-1.0-20.fc39.noarch  69 kB/s |  10 kB     00:00    
(79/153): keyutils-libs-1.6.1-7.fc39.s390x.rpm  207 kB/s |  31 kB     00:00    
(80/153): krb5-libs-1.21.2-1.fc40.s390x.rpm     4.1 MB/s | 780 kB     00:00    
(81/153): libacl-2.3.1-9.fc40.s390x.rpm         158 kB/s |  24 kB     00:00    
(82/153): libattr-2.5.1-9.fc40.s390x.rpm        121 kB/s |  18 kB     00:00    
(83/153): libbrotli-1.1.0-1.fc40.s390x.rpm      2.2 MB/s | 379 kB     00:00    
(84/153): libcap-2.48-7.fc39.s390x.rpm          450 kB/s |  69 kB     00:00    
(85/153): libcap-ng-0.8.3-8.fc40.s390x.rpm      216 kB/s |  32 kB     00:00    
(86/153): libcom_err-1.47.0-2.fc39.s390x.rpm    175 kB/s |  26 kB     00:00    
(87/153): libeconf-0.5.2-1.fc40.s390x.rpm       210 kB/s |  32 kB     00:00    
(88/153): libevent-2.1.12-9.fc39.s390x.rpm      1.5 MB/s | 260 kB     00:00    
(89/153): libffi-3.4.4-4.fc39.s390x.rpm         239 kB/s |  36 kB     00:00    
(90/153): libidn2-2.3.4-3.fc39.s390x.rpm        765 kB/s | 118 kB     00:00    
(91/153): libnsl2-2.0.0-6.fc39.s390x.rpm        197 kB/s |  30 kB     00:00    
(92/153): libpkgconf-1.9.5-2.fc39.s390x.rpm     255 kB/s |  38 kB     00:00    
(93/153): libpsl-0.21.2-4.fc39.s390x.rpm        413 kB/s |  63 kB     00:00    
(94/153): libpwquality-1.4.5-6.fc39.s390x.rpm   785 kB/s | 121 kB     00:00    
(95/153): libselinux-3.5-5.fc39.s390x.rpm       601 kB/s |  91 kB     00:00    
(96/153): libsemanage-3.5-4.fc39.s390x.rpm      789 kB/s | 122 kB     00:00    
(97/153): libsepol-3.5-2.fc39.s390x.rpm         2.0 MB/s | 330 kB     00:00    
(98/153): libsigsegv-2.14-5.fc39.s390x.rpm      180 kB/s |  27 kB     00:00    
(99/153): libssh-0.10.5-2.fc39.s390x.rpm        1.3 MB/s | 209 kB     00:00    
(100/153): libssh-config-0.10.5-2.fc39.noarch.r  61 kB/s | 9.2 kB     00:00    
(101/153): libtasn1-4.19.0-3.fc39.s390x.rpm     513 kB/s |  77 kB     00:00    
(102/153): libtirpc-1.3.3-1.rc2.fc39.s390x.rpm  621 kB/s |  95 kB     00:00    
(103/153): libunistring-1.1-5.fc40.s390x.rpm    3.1 MB/s | 556 kB     00:00    
(104/153): libutempter-1.2.1-10.fc39.s390x.rpm  175 kB/s |  26 kB     00:00    
(105/153): libverto-0.3.2-6.fc39.s390x.rpm      137 kB/s |  21 kB     00:00    
(106/153): libxcrypt-4.4.36-2.fc39.s390x.rpm    802 kB/s | 124 kB     00:00    
(107/153): lua-libs-5.4.6-3.fc39.s390x.rpm      917 kB/s | 142 kB     00:00    
(108/153): lua-srpm-macros-1-9.fc39.noarch.rpm   57 kB/s | 8.6 kB     00:00    
(109/153): lz4-libs-1.9.4-4.fc39.s390x.rpm      533 kB/s |  81 kB     00:00    
(110/153): mpfr-4.2.0-3.fc39.s390x.rpm          1.8 MB/s | 298 kB     00:00    
(111/153): ncurses-base-6.4-7.20230520.fc40.noa 573 kB/s |  88 kB     00:00    
(112/153): ncurses-libs-6.4-7.20230520.fc40.s39 2.1 MB/s | 361 kB     00:00    
(113/153): ocaml-srpm-macros-8-2.fc39.noarch.rp  91 kB/s |  14 kB     00:00    
(114/153): openblas-srpm-macros-2-14.fc39.noarc  50 kB/s | 7.5 kB     00:00    
(115/153): openldap-2.6.6-1.fc39.s390x.rpm      1.6 MB/s | 262 kB     00:00    
(116/153): p11-kit-0.25.0-2.fc39.s390x.rpm      2.8 MB/s | 507 kB     00:00    
(117/153): p11-kit-trust-0.25.0-2.fc39.s390x.rp 912 kB/s | 141 kB     00:00    
(118/153): package-notes-srpm-macros-0.5-9.fc39  75 kB/s |  11 kB     00:00    
(119/153): pam-libs-1.5.3-2.fc39.s390x.rpm      394 kB/s |  59 kB     00:00    
(120/153): pam-1.5.3-2.fc39.s390x.rpm           3.3 MB/s | 558 kB     00:00    
(121/153): patch-2.7.6-22.fc39.s390x.rpm        863 kB/s | 134 kB     00:00    
(122/153): pcre2-10.42-1.fc39.2.s390x.rpm       1.5 MB/s | 250 kB     00:00    
(123/153): pcre2-syntax-10.42-1.fc39.2.noarch.r 923 kB/s | 143 kB     00:00    
(124/153): perl-srpm-macros-1-51.fc39.noarch.rp  54 kB/s | 8.0 kB     00:00    
(125/153): pkgconf-1.9.5-2.fc39.s390x.rpm       285 kB/s |  43 kB     00:00    
(126/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm    91 kB/s |  14 kB     00:00    
(127/153): pkgconf-pkg-config-1.9.5-2.fc39.s390  64 kB/s | 9.6 kB     00:00    
(128/153): popt-1.19-3.fc39.s390x.rpm           460 kB/s |  69 kB     00:00    
(129/153): publicsuffix-list-dafsa-20230812-1.f 376 kB/s |  57 kB     00:00    
(130/153): pyproject-srpm-macros-1.9.0-2.fc39.n  94 kB/s |  14 kB     00:00    
(131/153): python-srpm-macros-3.12-4.fc40.noarc 168 kB/s |  25 kB     00:00    
(132/153): qt5-srpm-macros-5.15.10-2.fc39.noarc  55 kB/s | 8.3 kB     00:00    
(133/153): qt6-srpm-macros-6.5.2-2.fc39.noarch.  62 kB/s | 9.2 kB     00:00    
(134/153): readline-8.2-4.fc39.s390x.rpm        1.4 MB/s | 229 kB     00:00    
(135/153): rpm-4.18.99-1.fc40.s390x.rpm         3.2 MB/s | 538 kB     00:00    
(136/153): rpm-build-4.18.99-1.fc40.s390x.rpm   511 kB/s |  78 kB     00:00    
(137/153): rpm-build-libs-4.18.99-1.fc40.s390x. 638 kB/s |  97 kB     00:00    
(138/153): rpm-libs-4.18.99-1.fc40.s390x.rpm    2.0 MB/s | 323 kB     00:00    
(139/153): rpm-sequoia-1.5.0-1.fc40.s390x.rpm   5.0 MB/s | 1.0 MB     00:00    
(140/153): rust-srpm-macros-24-5.fc40.noarch.rp  81 kB/s |  12 kB     00:00    
(141/153): sed-4.8-14.fc39.s390x.rpm            1.9 MB/s | 309 kB     00:00    
(142/153): setup-2.14.4-1.fc39.noarch.rpm       989 kB/s | 154 kB     00:00    
(143/153): sqlite-libs-3.43.1-1.fc40.s390x.rpm  4.2 MB/s | 737 kB     00:00    
(144/153): shadow-utils-4.14.0-1.fc40.s390x.rpm 5.9 MB/s | 1.3 MB     00:00    
(145/153): systemd-libs-254.1-2.fc40.s390x.rpm  3.7 MB/s | 696 kB     00:00    
(146/153): tar-1.35-2.fc40.s390x.rpm            4.9 MB/s | 874 kB     00:00    
(147/153): tzdata-2023c-3.fc40.noarch.rpm       3.8 MB/s | 718 kB     00:00    
(148/153): unzip-6.0-62.fc39.s390x.rpm          1.2 MB/s | 194 kB     00:00    
(149/153): which-2.21-40.fc39.s390x.rpm         284 kB/s |  43 kB     00:00    
(150/153): xxhash-libs-0.8.2-1.fc39.s390x.rpm   246 kB/s |  37 kB     00:00    
(151/153): xz-5.4.4-1.fc39.s390x.rpm            3.1 MB/s | 557 kB     00:00    
(152/153): xz-libs-5.4.4-1.fc39.s390x.rpm       739 kB/s | 114 kB     00:00    
(153/153): zip-3.0-38.fc39.s390x.rpm            1.7 MB/s | 283 kB     00:00    
--------------------------------------------------------------------------------
Total                                           6.4 MB/s |  53 MB     00:08     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.s390x                           1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.2.1-1.fc40.s390x                           1/153 
  Running scriptlet: libgcc-13.2.1-1.fc40.s390x                           1/153 
  Installing       : crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Installing       : tzdata-2023c-3.fc40.noarch                           3/153 
  Installing       : fedora-release-identity-basic-40-0.7.noarch          4/153 
  Installing       : fedora-repos-rawhide-40-0.1.noarch                   5/153 
  Installing       : fedora-gpg-keys-40-0.1.noarch                        6/153 
  Installing       : fedora-repos-40-0.1.noarch                           7/153 
  Installing       : fedora-release-common-40-0.7.noarch                  8/153 
  Installing       : fedora-release-40-0.7.noarch                         9/153 
  Installing       : setup-2.14.4-1.fc39.noarch                          10/153 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.4-1.fc39.noarch                          10/153 
  Installing       : filesystem-3.18-6.fc39.s390x                        11/153 
  Installing       : basesystem-11-18.fc39.noarch                        12/153 
  Installing       : rust-srpm-macros-24-5.fc40.noarch                   13/153 
  Installing       : qt6-srpm-macros-6.5.2-2.fc39.noarch                 14/153 
  Installing       : qt5-srpm-macros-5.15.10-2.fc39.noarch               15/153 
  Installing       : pyproject-srpm-macros-1.9.0-2.fc39.noarch           16/153 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      17/153 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      18/153 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   19/153 
  Installing       : pcre2-syntax-10.42-1.fc39.2.noarch                  20/153 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         21/153 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               22/153 
  Installing       : ocaml-srpm-macros-8-2.fc39.noarch                   23/153 
  Installing       : ncurses-base-6.4-7.20230520.fc40.noarch             24/153 
  Installing       : glibc-gconv-extra-2.38.9000-8.fc40.s390x            25/153 
  Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.s390x            25/153 
  Installing       : glibc-minimal-langpack-2.38.9000-8.fc40.s390x       26/153 
  Installing       : glibc-common-2.38.9000-8.fc40.s390x                 27/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.s390x                        28/153 
  Installing       : glibc-2.38.9000-8.fc40.s390x                        28/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.s390x                        28/153 
  Installing       : ncurses-libs-6.4-7.20230520.fc40.s390x              29/153 
  Installing       : bash-5.2.15-5.fc39.s390x                            30/153 
  Running scriptlet: bash-5.2.15-5.fc39.s390x                            30/153 
  Installing       : zlib-ng-compat-2.1.3-3.fc40.s390x                   31/153 
  Installing       : xz-libs-5.4.4-1.fc39.s390x                          32/153 
  Installing       : bzip2-libs-1.0.8-16.fc39.s390x                      33/153 
  Installing       : libstdc++-13.2.1-1.fc40.s390x                       34/153 
  Installing       : libuuid-2.39.2-1.fc40.s390x                         35/153 
  Installing       : libzstd-1.5.5-4.fc40.s390x                          36/153 
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  Verifying        : tar-2:1.35-2.fc40.s390x                            146/153 
  Verifying        : tzdata-2023c-3.fc40.noarch                         147/153 
  Verifying        : unzip-6.0-62.fc39.s390x                            148/153 
  Verifying        : which-2.21-40.fc39.s390x                           149/153 
  Verifying        : xxhash-libs-0.8.2-1.fc39.s390x                     150/153 
  Verifying        : xz-5.4.4-1.fc39.s390x                              151/153 
  Verifying        : xz-libs-5.4.4-1.fc39.s390x                         152/153 
  Verifying        : zip-3.0-38.fc39.s390x                              153/153 

Installed:
  alternatives-1.25-1.fc39.s390x                                                
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-4.fc40.s390x                                                 
  authselect-1.4.2-3.fc39.s390x                                                 
  authselect-libs-1.4.2-3.fc39.s390x                                            
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.15-5.fc39.s390x                                                      
  binutils-2.41-5.fc40.s390x                                                    
  binutils-gold-2.41-5.fc40.s390x                                               
  bzip2-1.0.8-16.fc39.s390x                                                     
  bzip2-libs-1.0.8-16.fc39.s390x                                                
  ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch                              
  coreutils-9.4-1.fc40.s390x                                                    
  coreutils-common-9.4-1.fc40.s390x                                             
  cpio-2.14-4.fc39.s390x                                                        
  cracklib-2.9.11-2.fc40.s390x                                                  
  crypto-policies-20230731-1.git5ed06e0.fc39.noarch                             
  curl-8.3.0-1.fc40.s390x                                                       
  cyrus-sasl-lib-2.1.28-11.fc40.s390x                                           
  debugedit-5.0-10.fc39.s390x                                                   
  diffutils-3.10-3.fc39.s390x                                                   
  dwz-0.15-3.fc39.s390x                                                         
  ed-1.19-4.fc39.s390x                                                          
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.189-6.fc40.s390x                                                   
  elfutils-debuginfod-client-0.189-6.fc40.s390x                                 
  elfutils-default-yama-scope-0.189-6.fc40.noarch                               
  elfutils-libelf-0.189-6.fc40.s390x                                            
  elfutils-libs-0.189-6.fc40.s390x                                              
  fedora-gpg-keys-40-0.1.noarch                                                 
  fedora-release-40-0.7.noarch                                                  
  fedora-release-common-40-0.7.noarch                                           
  fedora-release-identity-basic-40-0.7.noarch                                   
  fedora-repos-40-0.1.noarch                                                    
  fedora-repos-rawhide-40-0.1.noarch                                            
  file-5.45-1.fc40.s390x                                                        
  file-libs-5.45-1.fc40.s390x                                                   
  filesystem-3.18-6.fc39.s390x                                                  
  findutils-1:4.9.0-6.fc40.s390x                                                
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.1.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.s390x                                                       
  gdb-minimal-13.2-8.fc40.s390x                                                 
  gdbm-libs-1:1.23-4.fc39.s390x                                                 
  ghc-srpm-macros-1.6.1-2.fc39.noarch                                           
  glibc-2.38.9000-8.fc40.s390x                                                  
  glibc-common-2.38.9000-8.fc40.s390x                                           
  glibc-gconv-extra-2.38.9000-8.fc40.s390x                                      
  glibc-minimal-langpack-2.38.9000-8.fc40.s390x                                 
  gmp-1:6.2.1-5.fc39.s390x                                                      
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.2.0-7.fc40.noarch                                            
  grep-3.11-5.fc40.s390x                                                        
  gzip-1.12-6.fc39.s390x                                                        
  info-7.0.3-3.fc39.s390x                                                       
  jansson-2.13.1-7.fc39.s390x                                                   
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.s390x                                              
  krb5-libs-1.21.2-1.fc40.s390x                                                 
  libacl-2.3.1-9.fc40.s390x                                                     
  libarchive-3.7.2-1.fc40.s390x                                                 
  libattr-2.5.1-9.fc40.s390x                                                    
  libblkid-2.39.2-1.fc40.s390x                                                  
  libbrotli-1.1.0-1.fc40.s390x                                                  
  libcap-2.48-7.fc39.s390x                                                      
  libcap-ng-0.8.3-8.fc40.s390x                                                  
  libcom_err-1.47.0-2.fc39.s390x                                                
  libcurl-8.3.0-1.fc40.s390x                                                    
  libdb-5.3.28-58.fc40.s390x                                                    
  libeconf-0.5.2-1.fc40.s390x                                                   
  libevent-2.1.12-9.fc39.s390x                                                  
  libfdisk-2.39.2-1.fc40.s390x                                                  
  libffi-3.4.4-4.fc39.s390x                                                     
  libgcc-13.2.1-1.fc40.s390x                                                    
  libgomp-13.2.1-1.fc40.s390x                                                   
  libidn2-2.3.4-3.fc39.s390x                                                    
  libmount-2.39.2-1.fc40.s390x                                                  
  libnghttp2-1.56.0-1.fc40.s390x                                                
  libnsl2-2.0.0-6.fc39.s390x                                                    
  libpkgconf-1.9.5-2.fc39.s390x                                                 
  libpsl-0.21.2-4.fc39.s390x                                                    
  libpwquality-1.4.5-6.fc39.s390x                                               
  libselinux-3.5-5.fc39.s390x                                                   
  libsemanage-3.5-4.fc39.s390x                                                  
  libsepol-3.5-2.fc39.s390x                                                     
  libsigsegv-2.14-5.fc39.s390x                                                  
  libsmartcols-2.39.2-1.fc40.s390x                                              
  libssh-0.10.5-2.fc39.s390x                                                    
  libssh-config-0.10.5-2.fc39.noarch                                            
  libstdc++-13.2.1-1.fc40.s390x                                                 
  libtasn1-4.19.0-3.fc39.s390x                                                  
  libtirpc-1.3.3-1.rc2.fc39.s390x                                               
  libunistring-1.1-5.fc40.s390x                                                 
  libutempter-1.2.1-10.fc39.s390x                                               
  libuuid-2.39.2-1.fc40.s390x                                                   
  libverto-0.3.2-6.fc39.s390x                                                   
  libxcrypt-4.4.36-2.fc39.s390x                                                 
  libxml2-2.11.5-1.fc40.s390x                                                   
  libzstd-1.5.5-4.fc40.s390x                                                    
  lua-libs-5.4.6-3.fc39.s390x                                                   
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.s390x                                                   
  mpfr-4.2.0-3.fc39.s390x                                                       
  ncurses-base-6.4-7.20230520.fc40.noarch                                       
  ncurses-libs-6.4-7.20230520.fc40.s390x                                        
  ocaml-srpm-macros-8-2.fc39.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.s390x                                                   
  openssl-libs-1:3.1.1-4.fc40.s390x                                             
  p11-kit-0.25.0-2.fc39.s390x                                                   
  p11-kit-trust-0.25.0-2.fc39.s390x                                             
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-2.fc39.s390x                                                        
  pam-libs-1.5.3-2.fc39.s390x                                                   
  patch-2.7.6-22.fc39.s390x                                                     
  pcre2-10.42-1.fc39.2.s390x                                                    
  pcre2-syntax-10.42-1.fc39.2.noarch                                            
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.s390x                                                    
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.s390x                                         
  popt-1.19-3.fc39.s390x                                                        
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.9.0-2.fc39.noarch                                     
  python-srpm-macros-3.12-4.fc40.noarch                                         
  qt5-srpm-macros-5.15.10-2.fc39.noarch                                         
  qt6-srpm-macros-6.5.2-2.fc39.noarch                                           
  readline-8.2-4.fc39.s390x                                                     
  redhat-rpm-config-270-1.fc40.noarch                                           
  rpm-4.18.99-1.fc40.s390x                                                      
  rpm-build-4.18.99-1.fc40.s390x                                                
  rpm-build-libs-4.18.99-1.fc40.s390x                                           
  rpm-libs-4.18.99-1.fc40.s390x                                                 
  rpm-sequoia-1.5.0-1.fc40.s390x                                                
  rust-srpm-macros-24-5.fc40.noarch                                             
  sed-4.8-14.fc39.s390x                                                         
  setup-2.14.4-1.fc39.noarch                                                    
  shadow-utils-2:4.14.0-1.fc40.s390x                                            
  sqlite-libs-3.43.1-1.fc40.s390x                                               
  systemd-libs-254.1-2.fc40.s390x                                               
  tar-2:1.35-2.fc40.s390x                                                       
  tzdata-2023c-3.fc40.noarch                                                    
  unzip-6.0-62.fc39.s390x                                                       
  util-linux-2.39.2-1.fc40.s390x                                                
  util-linux-core-2.39.2-1.fc40.s390x                                           
  which-2.21-40.fc39.s390x                                                      
  xxhash-libs-0.8.2-1.fc39.s390x                                                
  xz-5.4.4-1.fc39.s390x                                                         
  xz-libs-5.4.4-1.fc39.s390x                                                    
  zip-3.0-38.fc39.s390x                                                         
  zlib-ng-compat-2.1.3-3.fc40.s390x                                             
  zstd-1.5.5-4.fc40.s390x                                                       

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.s390x
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.s390x
authselect-1.4.2-3.fc39.s390x
authselect-libs-1.4.2-3.fc39.s390x
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.s390x
binutils-2.41-5.fc40.s390x
binutils-gold-2.41-5.fc40.s390x
bzip2-1.0.8-16.fc39.s390x
bzip2-libs-1.0.8-16.fc39.s390x
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.s390x
coreutils-common-9.4-1.fc40.s390x
cpio-2.14-4.fc39.s390x
cracklib-2.9.11-2.fc40.s390x
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.s390x
cyrus-sasl-lib-2.1.28-11.fc40.s390x
debugedit-5.0-10.fc39.s390x
diffutils-3.10-3.fc39.s390x
dwz-0.15-3.fc39.s390x
ed-1.19-4.fc39.s390x
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.s390x
elfutils-debuginfod-client-0.189-6.fc40.s390x
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.s390x
elfutils-libs-0.189-6.fc40.s390x
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.s390x
file-libs-5.45-1.fc40.s390x
filesystem-3.18-6.fc39.s390x
findutils-4.9.0-6.fc40.s390x
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.s390x
gdb-minimal-13.2-8.fc40.s390x
gdbm-libs-1.23-4.fc39.s390x
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.s390x
glibc-common-2.38.9000-8.fc40.s390x
glibc-gconv-extra-2.38.9000-8.fc40.s390x
glibc-minimal-langpack-2.38.9000-8.fc40.s390x
gmp-6.2.1-5.fc39.s390x
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.s390x
gzip-1.12-6.fc39.s390x
info-7.0.3-3.fc39.s390x
jansson-2.13.1-7.fc39.s390x
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.s390x
krb5-libs-1.21.2-1.fc40.s390x
libacl-2.3.1-9.fc40.s390x
libarchive-3.7.2-1.fc40.s390x
libattr-2.5.1-9.fc40.s390x
libblkid-2.39.2-1.fc40.s390x
libbrotli-1.1.0-1.fc40.s390x
libcap-2.48-7.fc39.s390x
libcap-ng-0.8.3-8.fc40.s390x
libcom_err-1.47.0-2.fc39.s390x
libcurl-8.3.0-1.fc40.s390x
libdb-5.3.28-58.fc40.s390x
libeconf-0.5.2-1.fc40.s390x
libevent-2.1.12-9.fc39.s390x
libfdisk-2.39.2-1.fc40.s390x
libffi-3.4.4-4.fc39.s390x
libgcc-13.2.1-1.fc40.s390x
libgomp-13.2.1-1.fc40.s390x
libidn2-2.3.4-3.fc39.s390x
libmount-2.39.2-1.fc40.s390x
libnghttp2-1.56.0-1.fc40.s390x
libnsl2-2.0.0-6.fc39.s390x
libpkgconf-1.9.5-2.fc39.s390x
libpsl-0.21.2-4.fc39.s390x
libpwquality-1.4.5-6.fc39.s390x
libselinux-3.5-5.fc39.s390x
libsemanage-3.5-4.fc39.s390x
libsepol-3.5-2.fc39.s390x
libsigsegv-2.14-5.fc39.s390x
libsmartcols-2.39.2-1.fc40.s390x
libssh-0.10.5-2.fc39.s390x
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc40.s390x
libtasn1-4.19.0-3.fc39.s390x
libtirpc-1.3.3-1.rc2.fc39.s390x
libunistring-1.1-5.fc40.s390x
libutempter-1.2.1-10.fc39.s390x
libuuid-2.39.2-1.fc40.s390x
libverto-0.3.2-6.fc39.s390x
libxcrypt-4.4.36-2.fc39.s390x
libxml2-2.11.5-1.fc40.s390x
libzstd-1.5.5-4.fc40.s390x
lua-libs-5.4.6-3.fc39.s390x
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.s390x
mpfr-4.2.0-3.fc39.s390x
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.s390x
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.s390x
openssl-libs-3.1.1-4.fc40.s390x
p11-kit-0.25.0-2.fc39.s390x
p11-kit-trust-0.25.0-2.fc39.s390x
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.s390x
pam-libs-1.5.3-2.fc39.s390x
patch-2.7.6-22.fc39.s390x
pcre2-10.42-1.fc39.2.s390x
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.s390x
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.s390x
popt-1.19-3.fc39.s390x
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.s390x
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.s390x
rpm-build-4.18.99-1.fc40.s390x
rpm-build-libs-4.18.99-1.fc40.s390x
rpm-libs-4.18.99-1.fc40.s390x
rpm-sequoia-1.5.0-1.fc40.s390x
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.s390x
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.s390x
sqlite-libs-3.43.1-1.fc40.s390x
systemd-libs-254.1-2.fc40.s390x
tar-1.35-2.fc40.s390x
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.s390x
util-linux-2.39.2-1.fc40.s390x
util-linux-core-2.39.2-1.fc40.s390x
which-2.21-40.fc39.s390x
xxhash-libs-0.8.2-1.fc39.s390x
xz-5.4.4-1.fc39.s390x
xz-libs-5.4.4-1.fc39.s390x
zip-3.0-38.fc39.s390x
zlib-ng-compat-2.1.3-3.fc40.s390x
zstd-1.5.5-4.fc40.s390x
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-eqckx5bd/mmseq/mmseq.spec) Config(child) 2 minutes 0 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695081486.692554/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695081486.692554/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.18.99-1.fc40.s390x
  rpm-sequoia-1.5.0-1.fc40.s390x
  python3-dnf-4.16.2-4.fc40.noarch
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch
  yum-4.16.2-4.fc40.noarch
Start: build phase for mmseq-1.0.11-16.fc40.src.rpm
Start: build setup for mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 2.7 kB/s | 1.5 kB     00:00    
fedora                                          7.9 kB/s | 6.1 kB     00:00    
Dependencies resolved.
================================================================================
 Package                      Arch    Version                  Repository  Size
================================================================================
Installing:
 armadillo-devel              s390x   10.8.2-5.fc39            fedora     2.2 M
 boost-devel                  s390x   1.81.0-6.fc40            copr_base   12 M
 flexiblas-devel              s390x   3.3.1-5.fc39             fedora     117 k
 gcc-c++                      s390x   13.2.1-1.fc40            copr_base   11 M
 gsl-devel                    s390x   2.7.1-5.fc39             fedora     653 k
 htslib-devel                 s390x   1.15.1-3.fc40            copr_base  100 k
 make                         s390x   1:4.4.1-2.fc39           fedora     605 k
 perl-generators              noarch  1.16-3.fc39              fedora      16 k
 zlib-ng-compat-devel         s390x   2.1.3-3.fc40             copr_base   34 k
Installing dependencies:
 SuperLU                      s390x   6.0.0-1.fc39             fedora     235 k
 SuperLU-devel                s390x   6.0.0-1.fc39             fedora      27 k
 annobin-docs                 noarch  12.26-1.fc40             fedora      94 k
 annobin-plugin-gcc           s390x   12.26-1.fc40             fedora     958 k
 armadillo                    s390x   10.8.2-5.fc39            fedora      39 k
 arpack                       s390x   3.8.0-7.fc39             fedora     219 k
 arpack-devel                 s390x   3.8.0-7.fc39             fedora      14 k
 autoconf                     noarch  2.71-7.fc40              fedora     733 k
 automake                     noarch  1.16.5-14.fc40           fedora     697 k
 boost                        s390x   1.81.0-6.fc40            copr_base   15 k
 boost-atomic                 s390x   1.81.0-6.fc40            copr_base   20 k
 boost-chrono                 s390x   1.81.0-6.fc40            copr_base   26 k
 boost-container              s390x   1.81.0-6.fc40            copr_base   42 k
 boost-context                s390x   1.81.0-6.fc40            copr_base   18 k
 boost-contract               s390x   1.81.0-6.fc40            copr_base   46 k
 boost-coroutine              s390x   1.81.0-6.fc40            copr_base   21 k
 boost-date-time              s390x   1.81.0-6.fc40            copr_base   17 k
 boost-fiber                  s390x   1.81.0-6.fc40            copr_base   44 k
 boost-filesystem             s390x   1.81.0-6.fc40            copr_base   68 k
 boost-graph                  s390x   1.81.0-6.fc40            copr_base  159 k
 boost-iostreams              s390x   1.81.0-6.fc40            copr_base   41 k
 boost-json                   s390x   1.81.0-6.fc40            copr_base  115 k
 boost-locale                 s390x   1.81.0-6.fc40            copr_base  226 k
 boost-log                    s390x   1.81.0-6.fc40            copr_base  499 k
 boost-math                   s390x   1.81.0-6.fc40            copr_base  240 k
 boost-nowide                 s390x   1.81.0-6.fc40            copr_base   22 k
 boost-numpy3                 s390x   1.81.0-6.fc40            copr_base   30 k
 boost-program-options        s390x   1.81.0-6.fc40            copr_base  112 k
 boost-python3                s390x   1.81.0-6.fc40            copr_base   96 k
 boost-random                 s390x   1.81.0-6.fc40            copr_base   25 k
 boost-regex                  s390x   1.81.0-6.fc40            copr_base  124 k
 boost-serialization          s390x   1.81.0-6.fc40            copr_base  137 k
 boost-stacktrace             s390x   1.81.0-6.fc40            copr_base   31 k
 boost-system                 s390x   1.81.0-6.fc40            copr_base   17 k
 boost-test                   s390x   1.81.0-6.fc40            copr_base  251 k
 boost-thread                 s390x   1.81.0-6.fc40            copr_base   59 k
 boost-timer                  s390x   1.81.0-6.fc40            copr_base   25 k
 boost-type_erasure           s390x   1.81.0-6.fc40            copr_base   34 k
 boost-wave                   s390x   1.81.0-6.fc40            copr_base  246 k
 cmake-filesystem             s390x   3.27.4-8.fc40            fedora      19 k
 cpp                          s390x   13.2.1-1.fc40            copr_base  8.8 M
 emacs-filesystem             noarch  1:29.1-1.fc39            fedora     8.4 k
 expat                        s390x   2.5.0-3.fc39             fedora     114 k
 flexiblas                    s390x   3.3.1-5.fc39             fedora      33 k
 flexiblas-netlib             s390x   3.3.1-5.fc39             fedora     3.6 M
 flexiblas-netlib64           s390x   3.3.1-5.fc39             fedora     3.5 M
 flexiblas-openblas-openmp    s390x   3.3.1-5.fc39             fedora      17 k
 flexiblas-openblas-openmp64  s390x   3.3.1-5.fc39             fedora      17 k
 gc                           s390x   8.2.2-4.fc39             fedora     114 k
 gcc                          s390x   13.2.1-1.fc40            copr_base   28 M
 gcc-gfortran                 s390x   13.2.1-1.fc40            copr_base   10 M
 gcc-plugin-annobin           s390x   13.2.1-1.fc40            copr_base   46 k
 glibc-devel                  s390x   2.38.9000-8.fc40         copr_base   96 k
 glibc-headers-s390           noarch  2.38.9000-8.fc40         copr_base  489 k
 groff-base                   s390x   1.23.0-2.fc39            fedora     1.2 M
 gsl                          s390x   2.7.1-5.fc39             fedora     1.2 M
 guile22                      s390x   2.2.7-9.fc39             fedora     6.5 M
 hdf5                         s390x   1.12.1-12.fc40           copr_base  2.4 M
 hdf5-devel                   s390x   1.12.1-12.fc40           copr_base  1.3 M
 htslib                       s390x   1.15.1-3.fc40            copr_base  532 k
 kernel-headers               s390x   6.6.0-0.rc1.git0.1.fc40  fedora     1.5 M
 libaec                       s390x   1.0.6-5.fc39             fedora      45 k
 libaec-devel                 s390x   1.0.6-5.fc39             fedora      12 k
 libasan                      s390x   13.2.1-1.fc40            copr_base  507 k
 libatomic                    s390x   13.2.1-1.fc40            copr_base   34 k
 libb2                        s390x   0.98.1-9.fc39            fedora      27 k
 libgfortran                  s390x   13.2.1-1.fc40            copr_base  576 k
 libicu                       s390x   73.2-2.fc39              fedora      11 M
 libicu-devel                 s390x   73.2-2.fc39              fedora     925 k
 libmpc                       s390x   1.3.1-3.fc39             fedora      73 k
 libstdc++-devel              s390x   13.2.1-1.fc40            copr_base  2.5 M
 libtool-ltdl                 s390x   2.4.7-8.fc40             fedora      37 k
 libubsan                     s390x   13.2.1-1.fc40            copr_base  219 k
 libxcrypt-devel              s390x   4.4.36-2.fc39            fedora      30 k
 m4                           s390x   1.4.19-7.fc40            fedora     313 k
 metis                        s390x   5.1.0.3-2.fc39           fedora     603 k
 mpdecimal                    s390x   2.5.1-7.fc39             fedora     100 k
 ncurses                      s390x   6.4-7.20230520.fc40      fedora     424 k
 openblas                     s390x   0.3.21-6.fc39            fedora      35 k
 openblas-openmp              s390x   0.3.21-6.fc39            fedora     4.3 M
 openblas-openmp64            s390x   0.3.21-6.fc39            fedora     4.2 M
 perl-AutoLoader              noarch  5.74-500.fc39            fedora      21 k
 perl-B                       s390x   1.88-500.fc39            fedora     178 k
 perl-Carp                    noarch  1.54-500.fc39            fedora      29 k
 perl-Class-Struct            noarch  0.68-500.fc39            fedora      22 k
 perl-Data-Dumper             s390x   2.188-501.fc39           fedora      57 k
 perl-Digest                  noarch  1.20-500.fc39            fedora      25 k
 perl-Digest-MD5              s390x   2.58-500.fc39            fedora      35 k
 perl-DynaLoader              s390x   1.54-500.fc39            fedora      26 k
 perl-Encode                  s390x   4:3.19-500.fc39          fedora     1.7 M
 perl-Errno                   s390x   1.37-500.fc39            fedora      15 k
 perl-Exporter                noarch  5.77-500.fc39            fedora      31 k
 perl-Fcntl                   s390x   1.15-500.fc39            fedora      21 k
 perl-Fedora-VSP              noarch  0.001-32.fc39            fedora      23 k
 perl-File-Basename           noarch  2.86-500.fc39            fedora      17 k
 perl-File-Compare            noarch  1.100.700-500.fc39       fedora      13 k
 perl-File-Copy               noarch  2.41-500.fc39            fedora      20 k
 perl-File-Find               noarch  1.43-500.fc39            fedora      25 k
 perl-File-Path               noarch  2.18-500.fc39            fedora      35 k
 perl-File-Temp               noarch  1:0.231.100-500.fc39     fedora      58 k
 perl-File-stat               noarch  1.13-500.fc39            fedora      17 k
 perl-FileHandle              noarch  2.05-500.fc39            fedora      16 k
 perl-Getopt-Long             noarch  1:2.54-500.fc39          fedora      60 k
 perl-Getopt-Std              noarch  1.13-500.fc39            fedora      16 k
 perl-HTTP-Tiny               noarch  0.088-3.fc39             fedora      56 k
 perl-IO                      s390x   1.52-500.fc39            fedora      82 k
 perl-IO-Socket-IP            noarch  0.42-1.fc39              fedora      42 k
 perl-IO-Socket-SSL           noarch  2.083-3.fc39             fedora     225 k
 perl-IPC-Open3               noarch  1.22-500.fc39            fedora      22 k
 perl-MIME-Base64             s390x   3.16-500.fc39            fedora      30 k
 perl-Mozilla-CA              noarch  20230821-1.fc40          fedora      13 k
 perl-Net-SSLeay              s390x   1.92-10.fc39             fedora     363 k
 perl-POSIX                   s390x   2.13-500.fc39            fedora      98 k
 perl-PathTools               s390x   3.89-500.fc39            fedora      87 k
 perl-Pod-Escapes             noarch  1:1.07-501.fc40          fedora      19 k
 perl-Pod-Perldoc             noarch  3.28.01-501.fc39         fedora      86 k
 perl-Pod-Simple              noarch  1:3.45-4.fc39            fedora     218 k
 perl-Pod-Usage               noarch  4:2.03-500.fc39          fedora      39 k
 perl-Scalar-List-Utils       s390x   5:1.63-500.fc39          fedora      74 k
 perl-SelectSaver             noarch  1.02-500.fc39            fedora      12 k
 perl-Socket                  s390x   4:2.037-3.fc39           fedora      55 k
 perl-Storable                s390x   1:3.32-500.fc39          fedora     100 k
 perl-Symbol                  noarch  1.09-500.fc39            fedora      14 k
 perl-Term-ANSIColor          noarch  5.01-501.fc39            fedora      47 k
 perl-Term-Cap                noarch  1.18-500.fc39            fedora      22 k
 perl-Text-ParseWords         noarch  3.31-500.fc39            fedora      16 k
 perl-Text-Tabs+Wrap          noarch  2023.0511-3.fc39         fedora      22 k
 perl-Thread-Queue            noarch  3.14-501.fc40            fedora      21 k
 perl-Time-Local              noarch  2:1.350-3.fc39           fedora      34 k
 perl-URI                     noarch  5.21-1.fc40              fedora     125 k
 perl-base                    noarch  2.27-500.fc39            fedora      16 k
 perl-constant                noarch  1.33-501.fc39            fedora      22 k
 perl-if                      noarch  0.61.000-500.fc39        fedora      14 k
 perl-interpreter             s390x   4:5.38.0-500.fc39        fedora      72 k
 perl-libnet                  noarch  3.15-501.fc39            fedora     129 k
 perl-libs                    s390x   4:5.38.0-500.fc39        fedora     2.5 M
 perl-locale                  noarch  1.10-500.fc39            fedora      14 k
 perl-macros                  noarch  4:5.38.0-500.fc39        fedora      12 k
 perl-mro                     s390x   1.28-500.fc39            fedora      29 k
 perl-overload                noarch  1.37-500.fc39            fedora      46 k
 perl-overloading             noarch  0.02-500.fc39            fedora      13 k
 perl-parent                  noarch  1:0.241-500.fc39         fedora      14 k
 perl-podlators               noarch  1:5.01-500.fc39          fedora     125 k
 perl-threads                 s390x   1:2.36-500.fc39          fedora      58 k
 perl-threads-shared          s390x   1.68-500.fc39            fedora      45 k
 perl-vars                    noarch  1.05-500.fc39            fedora      13 k
 python-pip-wheel             noarch  23.2.1-1.fc39            fedora     1.5 M
 python3                      s390x   3.12.0~rc2-1.fc40        fedora      26 k
 python3-libs                 s390x   3.12.0~rc2-1.fc40        fedora     9.2 M
 python3-numpy                s390x   1:1.24.4-2.fc39          fedora     7.6 M

Transaction Summary
================================================================================
Install  159 Packages

Total download size: 153 M
Installed size: 619 M
Downloading Packages:
(1/159): boost-1.81.0-6.fc40.s390x.rpm          2.9 kB/s |  15 kB     00:05    
(2/159): boost-atomic-1.81.0-6.fc40.s390x.rpm   3.9 kB/s |  20 kB     00:05    
(3/159): boost-chrono-1.81.0-6.fc40.s390x.rpm   5.1 kB/s |  26 kB     00:05    
(4/159): boost-container-1.81.0-6.fc40.s390x.rp 7.2 MB/s |  42 kB     00:00    
(5/159): boost-context-1.81.0-6.fc40.s390x.rpm  2.3 MB/s |  18 kB     00:00    
(6/159): boost-contract-1.81.0-6.fc40.s390x.rpm 4.3 MB/s |  46 kB     00:00    
(7/159): boost-coroutine-1.81.0-6.fc40.s390x.rp 4.5 MB/s |  21 kB     00:00    
(8/159): boost-date-time-1.81.0-6.fc40.s390x.rp 4.2 MB/s |  17 kB     00:00    
(9/159): boost-fiber-1.81.0-6.fc40.s390x.rpm    8.8 MB/s |  44 kB     00:00    
(10/159): boost-filesystem-1.81.0-6.fc40.s390x.  13 MB/s |  68 kB     00:00    
(11/159): boost-iostreams-1.81.0-6.fc40.s390x.r 8.1 MB/s |  41 kB     00:00    
(12/159): boost-graph-1.81.0-6.fc40.s390x.rpm    23 MB/s | 159 kB     00:00    
(13/159): boost-json-1.81.0-6.fc40.s390x.rpm     20 MB/s | 115 kB     00:00    
(14/159): boost-locale-1.81.0-6.fc40.s390x.rpm   32 MB/s | 226 kB     00:00    
(15/159): boost-math-1.81.0-6.fc40.s390x.rpm     27 MB/s | 240 kB     00:00    
(16/159): boost-log-1.81.0-6.fc40.s390x.rpm      39 MB/s | 499 kB     00:00    
(17/159): boost-nowide-1.81.0-6.fc40.s390x.rpm  5.3 MB/s |  22 kB     00:00    
(18/159): boost-numpy3-1.81.0-6.fc40.s390x.rpm  6.9 MB/s |  30 kB     00:00    
(19/159): boost-program-options-1.81.0-6.fc40.s  18 MB/s | 112 kB     00:00    
(20/159): boost-python3-1.81.0-6.fc40.s390x.rpm  19 MB/s |  96 kB     00:00    
(21/159): boost-random-1.81.0-6.fc40.s390x.rpm  6.1 MB/s |  25 kB     00:00    
(22/159): boost-serialization-1.81.0-6.fc40.s39  21 MB/s | 137 kB     00:00    
(23/159): boost-stacktrace-1.81.0-6.fc40.s390x. 6.6 MB/s |  31 kB     00:00    
(24/159): boost-regex-1.81.0-6.fc40.s390x.rpm   8.3 MB/s | 124 kB     00:00    
(25/159): boost-system-1.81.0-6.fc40.s390x.rpm  4.3 MB/s |  17 kB     00:00    
(26/159): boost-test-1.81.0-6.fc40.s390x.rpm     34 MB/s | 251 kB     00:00    
(27/159): boost-thread-1.81.0-6.fc40.s390x.rpm   12 MB/s |  59 kB     00:00    
(28/159): boost-timer-1.81.0-6.fc40.s390x.rpm   5.3 MB/s |  25 kB     00:00    
(29/159): boost-type_erasure-1.81.0-6.fc40.s390 7.7 MB/s |  34 kB     00:00    
(30/159): boost-wave-1.81.0-6.fc40.s390x.rpm     17 MB/s | 246 kB     00:00    
(31/159): cpp-13.2.1-1.fc40.s390x.rpm           184 MB/s | 8.8 MB     00:00    
(32/159): gcc-c++-13.2.1-1.fc40.s390x.rpm       122 MB/s |  11 MB     00:00    
(33/159): gcc-13.2.1-1.fc40.s390x.rpm           135 MB/s |  28 MB     00:00    
(34/159): boost-devel-1.81.0-6.fc40.s390x.rpm    37 MB/s |  12 MB     00:00    
(35/159): gcc-plugin-annobin-13.2.1-1.fc40.s390 2.2 MB/s |  46 kB     00:00    
(36/159): glibc-devel-2.38.9000-8.fc40.s390x.rp  22 MB/s |  96 kB     00:00    
(37/159): gcc-gfortran-13.2.1-1.fc40.s390x.rpm   91 MB/s |  10 MB     00:00    
(38/159): glibc-headers-s390-2.38.9000-8.fc40.n  39 MB/s | 489 kB     00:00    
(39/159): hdf5-1.12.1-12.fc40.s390x.rpm         114 MB/s | 2.4 MB     00:00    
(40/159): hdf5-devel-1.12.1-12.fc40.s390x.rpm    97 MB/s | 1.3 MB     00:00    
(41/159): libasan-13.2.1-1.fc40.s390x.rpm        72 MB/s | 507 kB     00:00    
(42/159): libatomic-13.2.1-1.fc40.s390x.rpm     9.5 MB/s |  34 kB     00:00    
(43/159): libgfortran-13.2.1-1.fc40.s390x.rpm    52 MB/s | 576 kB     00:00    
(44/159): libstdc++-devel-13.2.1-1.fc40.s390x.r 164 MB/s | 2.5 MB     00:00    
(45/159): libubsan-13.2.1-1.fc40.s390x.rpm       34 MB/s | 219 kB     00:00    
(46/159): zlib-ng-compat-devel-2.1.3-3.fc40.s39  10 MB/s |  34 kB     00:00    
(47/159): htslib-devel-1.15.1-3.fc40.s390x.rpm   82 kB/s | 100 kB     00:01    
(48/159): htslib-1.15.1-3.fc40.s390x.rpm        375 kB/s | 532 kB     00:01    
(49/159): SuperLU-devel-6.0.0-1.fc39.s390x.rpm   44 kB/s |  27 kB     00:00    
(50/159): annobin-docs-12.26-1.fc40.noarch.rpm  156 kB/s |  94 kB     00:00    
(51/159): armadillo-10.8.2-5.fc39.s390x.rpm     229 kB/s |  39 kB     00:00    
(52/159): SuperLU-6.0.0-1.fc39.s390x.rpm         47 kB/s | 235 kB     00:05    
(53/159): annobin-plugin-gcc-12.26-1.fc40.s390x 283 kB/s | 958 kB     00:03    
(54/159): arpack-devel-3.8.0-7.fc39.s390x.rpm    94 kB/s |  14 kB     00:00    
(55/159): arpack-3.8.0-7.fc39.s390x.rpm         307 kB/s | 219 kB     00:00    
(56/159): autoconf-2.71-7.fc40.noarch.rpm       1.2 MB/s | 733 kB     00:00    
(57/159): automake-1.16.5-14.fc40.noarch.rpm    2.4 MB/s | 697 kB     00:00    
(58/159): cmake-filesystem-3.27.4-8.fc40.s390x. 129 kB/s |  19 kB     00:00    
(59/159): emacs-filesystem-29.1-1.fc39.noarch.r  60 kB/s | 8.4 kB     00:00    
(60/159): expat-2.5.0-3.fc39.s390x.rpm          787 kB/s | 114 kB     00:00    
(61/159): armadillo-devel-10.8.2-5.fc39.s390x.r 546 kB/s | 2.2 MB     00:04    
(62/159): flexiblas-3.3.1-5.fc39.s390x.rpm      230 kB/s |  33 kB     00:00    
(63/159): flexiblas-devel-3.3.1-5.fc39.s390x.rp 801 kB/s | 117 kB     00:00    
(64/159): flexiblas-openblas-openmp-3.3.1-5.fc3 105 kB/s |  17 kB     00:00    
(65/159): flexiblas-netlib-3.3.1-5.fc39.s390x.r  11 MB/s | 3.6 MB     00:00    
(66/159): flexiblas-openblas-openmp64-3.3.1-5.f 119 kB/s |  17 kB     00:00    
(67/159): gc-8.2.2-4.fc39.s390x.rpm             763 kB/s | 114 kB     00:00    
(68/159): flexiblas-netlib64-3.3.1-5.fc39.s390x 7.8 MB/s | 3.5 MB     00:00    
(69/159): gsl-2.7.1-5.fc39.s390x.rpm            6.9 MB/s | 1.2 MB     00:00    
(70/159): gsl-devel-2.7.1-5.fc39.s390x.rpm      3.7 MB/s | 653 kB     00:00    
(71/159): groff-base-1.23.0-2.fc39.s390x.rpm    3.9 MB/s | 1.2 MB     00:00    
(72/159): kernel-headers-6.6.0-0.rc1.git0.1.fc4  10 MB/s | 1.5 MB     00:00    
(73/159): libaec-1.0.6-5.fc39.s390x.rpm         289 kB/s |  45 kB     00:00    
(74/159): libaec-devel-1.0.6-5.fc39.s390x.rpm    83 kB/s |  12 kB     00:00    
(75/159): libb2-0.98.1-9.fc39.s390x.rpm         187 kB/s |  27 kB     00:00    
(76/159): guile22-2.2.7-9.fc39.s390x.rpm         14 MB/s | 6.5 MB     00:00    
(77/159): libicu-devel-73.2-2.fc39.s390x.rpm    5.6 MB/s | 925 kB     00:00    
(78/159): libmpc-1.3.1-3.fc39.s390x.rpm         490 kB/s |  73 kB     00:00    
(79/159): libtool-ltdl-2.4.7-8.fc40.s390x.rpm   259 kB/s |  37 kB     00:00    
(80/159): libxcrypt-devel-4.4.36-2.fc39.s390x.r 198 kB/s |  30 kB     00:00    
(81/159): m4-1.4.19-7.fc40.s390x.rpm            2.0 MB/s | 313 kB     00:00    
(82/159): make-4.4.1-2.fc39.s390x.rpm           3.8 MB/s | 605 kB     00:00    
(83/159): libicu-73.2-2.fc39.s390x.rpm           18 MB/s |  11 MB     00:00    
(84/159): metis-5.1.0.3-2.fc39.s390x.rpm        3.2 MB/s | 603 kB     00:00    
(85/159): mpdecimal-2.5.1-7.fc39.s390x.rpm      667 kB/s | 100 kB     00:00    
(86/159): ncurses-6.4-7.20230520.fc40.s390x.rpm 2.9 MB/s | 424 kB     00:00    
(87/159): openblas-0.3.21-6.fc39.s390x.rpm      238 kB/s |  35 kB     00:00    
(88/159): perl-AutoLoader-5.74-500.fc39.noarch. 144 kB/s |  21 kB     00:00    
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(93/159): perl-Class-Struct-0.68-500.fc39.noarc 158 kB/s |  22 kB     00:00    
(94/159): perl-Data-Dumper-2.188-501.fc39.s390x 395 kB/s |  57 kB     00:00    
(95/159): perl-Digest-MD5-2.58-500.fc39.s390x.r 252 kB/s |  35 kB     00:00    
(96/159): perl-Digest-1.20-500.fc39.noarch.rpm  165 kB/s |  25 kB     00:00    
(97/159): perl-DynaLoader-1.54-500.fc39.s390x.r 181 kB/s |  26 kB     00:00    
(98/159): perl-Errno-1.37-500.fc39.s390x.rpm     98 kB/s |  15 kB     00:00    
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(101/159): perl-Fcntl-1.15-500.fc39.s390x.rpm   138 kB/s |  21 kB     00:00    
(102/159): perl-Fedora-VSP-0.001-32.fc39.noarch 165 kB/s |  23 kB     00:00    
(103/159): perl-File-Basename-2.86-500.fc39.noa 120 kB/s |  17 kB     00:00    
(104/159): perl-File-Copy-2.41-500.fc39.noarch. 144 kB/s |  20 kB     00:00    
(105/159): perl-File-Compare-1.100.700-500.fc39  89 kB/s |  13 kB     00:00    
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(110/159): perl-FileHandle-2.05-500.fc39.noarch 111 kB/s |  16 kB     00:00    
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(112/159): perl-Getopt-Std-1.13-500.fc39.noarch 105 kB/s |  16 kB     00:00    
(113/159): perl-HTTP-Tiny-0.088-3.fc39.noarch.r 395 kB/s |  56 kB     00:00    
(114/159): perl-IO-1.52-500.fc39.s390x.rpm      571 kB/s |  82 kB     00:00    
(115/159): perl-IO-Socket-IP-0.42-1.fc39.noarch 279 kB/s |  42 kB     00:00    
(116/159): perl-IO-Socket-SSL-2.083-3.fc39.noar 1.5 MB/s | 225 kB     00:00    
(117/159): perl-IPC-Open3-1.22-500.fc39.noarch. 152 kB/s |  22 kB     00:00    
(118/159): perl-MIME-Base64-3.16-500.fc39.s390x 201 kB/s |  30 kB     00:00    
(119/159): perl-Mozilla-CA-20230821-1.fc40.noar  96 kB/s |  13 kB     00:00    
(120/159): perl-Net-SSLeay-1.92-10.fc39.s390x.r 2.4 MB/s | 363 kB     00:00    
(121/159): perl-POSIX-2.13-500.fc39.s390x.rpm   656 kB/s |  98 kB     00:00    
(122/159): perl-PathTools-3.89-500.fc39.s390x.r 619 kB/s |  87 kB     00:00    
(123/159): perl-Pod-Escapes-1.07-501.fc40.noarc 136 kB/s |  19 kB     00:00    
(124/159): perl-Pod-Perldoc-3.28.01-501.fc39.no 577 kB/s |  86 kB     00:00    
(125/159): perl-Pod-Simple-3.45-4.fc39.noarch.r 1.5 MB/s | 218 kB     00:00    
(126/159): perl-Pod-Usage-2.03-500.fc39.noarch. 273 kB/s |  39 kB     00:00    
(127/159): perl-Scalar-List-Utils-1.63-500.fc39 494 kB/s |  74 kB     00:00    
(128/159): perl-SelectSaver-1.02-500.fc39.noarc  84 kB/s |  12 kB     00:00    
(129/159): perl-Socket-2.037-3.fc39.s390x.rpm   382 kB/s |  55 kB     00:00    
(130/159): perl-Storable-3.32-500.fc39.s390x.rp 665 kB/s | 100 kB     00:00    
(131/159): perl-Symbol-1.09-500.fc39.noarch.rpm 102 kB/s |  14 kB     00:00    
(132/159): perl-Term-ANSIColor-5.01-501.fc39.no 326 kB/s |  47 kB     00:00    
(133/159): perl-Term-Cap-1.18-500.fc39.noarch.r 146 kB/s |  22 kB     00:00    
(134/159): perl-Text-ParseWords-3.31-500.fc39.n 114 kB/s |  16 kB     00:00    
(135/159): perl-Text-Tabs+Wrap-2023.0511-3.fc39 156 kB/s |  22 kB     00:00    
(136/159): perl-Thread-Queue-3.14-501.fc40.noar 141 kB/s |  21 kB     00:00    
(137/159): perl-Time-Local-1.350-3.fc39.noarch. 245 kB/s |  34 kB     00:00    
(138/159): perl-URI-5.21-1.fc40.noarch.rpm      866 kB/s | 125 kB     00:00    
(139/159): perl-base-2.27-500.fc39.noarch.rpm   109 kB/s |  16 kB     00:00    
(140/159): perl-constant-1.33-501.fc39.noarch.r 160 kB/s |  22 kB     00:00    
(141/159): perl-generators-1.16-3.fc39.noarch.r 108 kB/s |  16 kB     00:00    
(142/159): perl-if-0.61.000-500.fc39.noarch.rpm  94 kB/s |  14 kB     00:00    
(143/159): perl-interpreter-5.38.0-500.fc39.s39 510 kB/s |  72 kB     00:00    
(144/159): perl-libnet-3.15-501.fc39.noarch.rpm 881 kB/s | 129 kB     00:00    
(145/159): perl-locale-1.10-500.fc39.noarch.rpm  96 kB/s |  14 kB     00:00    
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(147/159): perl-macros-5.38.0-500.fc39.noarch.r  86 kB/s |  12 kB     00:00    
(148/159): perl-mro-1.28-500.fc39.s390x.rpm     206 kB/s |  29 kB     00:00    
(149/159): perl-overload-1.37-500.fc39.noarch.r 305 kB/s |  46 kB     00:00    
(150/159): perl-overloading-0.02-500.fc39.noarc  89 kB/s |  13 kB     00:00    
(151/159): perl-parent-0.241-500.fc39.noarch.rp 102 kB/s |  14 kB     00:00    
(152/159): perl-podlators-5.01-500.fc39.noarch. 830 kB/s | 125 kB     00:00    
(153/159): perl-threads-2.36-500.fc39.s390x.rpm 402 kB/s |  58 kB     00:00    
(154/159): perl-threads-shared-1.68-500.fc39.s3 323 kB/s |  45 kB     00:00    
(155/159): perl-vars-1.05-500.fc39.noarch.rpm    88 kB/s |  13 kB     00:00    
(156/159): python3-3.12.0~rc2-1.fc40.s390x.rpm  185 kB/s |  26 kB     00:00    
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(158/159): python3-numpy-1.24.4-2.fc39.s390x.rp  12 MB/s | 7.6 MB     00:00    
(159/159): python3-libs-3.12.0~rc2-1.fc40.s390x 9.6 MB/s | 9.2 MB     00:00    
--------------------------------------------------------------------------------
Total                                           6.5 MB/s | 153 MB     00:23     
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  Preparing        :                                                        1/1 
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  Verifying        : boost-iostreams-1.81.0-6.fc40.s390x                 13/159 
  Verifying        : boost-json-1.81.0-6.fc40.s390x                      14/159 
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  Verifying        : hdf5-1.12.1-12.fc40.s390x                           39/159 
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  Verifying        : SuperLU-6.0.0-1.fc39.s390x                          49/159 
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  Verifying        : annobin-docs-12.26-1.fc40.noarch                    51/159 
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  Verifying        : armadillo-10.8.2-5.fc39.s390x                       53/159 
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  Verifying        : arpack-3.8.0-7.fc39.s390x                           55/159 
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  Verifying        : autoconf-2.71-7.fc40.noarch                         57/159 
  Verifying        : automake-1.16.5-14.fc40.noarch                      58/159 
  Verifying        : cmake-filesystem-3.27.4-8.fc40.s390x                59/159 
  Verifying        : emacs-filesystem-1:29.1-1.fc39.noarch               60/159 
  Verifying        : expat-2.5.0-3.fc39.s390x                            61/159 
  Verifying        : flexiblas-3.3.1-5.fc39.s390x                        62/159 
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  Verifying        : flexiblas-netlib64-3.3.1-5.fc39.s390x               65/159 
  Verifying        : flexiblas-openblas-openmp-3.3.1-5.fc39.s390x        66/159 
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  Verifying        : gc-8.2.2-4.fc39.s390x                               68/159 
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  Verifying        : gsl-2.7.1-5.fc39.s390x                              70/159 
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  Verifying        : guile22-2.2.7-9.fc39.s390x                          72/159 
  Verifying        : kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x        73/159 
  Verifying        : libaec-1.0.6-5.fc39.s390x                           74/159 
  Verifying        : libaec-devel-1.0.6-5.fc39.s390x                     75/159 
  Verifying        : libb2-0.98.1-9.fc39.s390x                           76/159 
  Verifying        : libicu-73.2-2.fc39.s390x                            77/159 
  Verifying        : libicu-devel-73.2-2.fc39.s390x                      78/159 
  Verifying        : libmpc-1.3.1-3.fc39.s390x                           79/159 
  Verifying        : libtool-ltdl-2.4.7-8.fc40.s390x                     80/159 
  Verifying        : libxcrypt-devel-4.4.36-2.fc39.s390x                 81/159 
  Verifying        : m4-1.4.19-7.fc40.s390x                              82/159 
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  Verifying        : mpdecimal-2.5.1-7.fc39.s390x                        85/159 
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  Verifying        : openblas-0.3.21-6.fc39.s390x                        87/159 
  Verifying        : openblas-openmp-0.3.21-6.fc39.s390x                 88/159 
  Verifying        : openblas-openmp64-0.3.21-6.fc39.s390x               89/159 
  Verifying        : perl-AutoLoader-5.74-500.fc39.noarch                90/159 
  Verifying        : perl-B-1.88-500.fc39.s390x                          91/159 
  Verifying        : perl-Carp-1.54-500.fc39.noarch                      92/159 
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  Verifying        : perl-Data-Dumper-2.188-501.fc39.s390x               94/159 
  Verifying        : perl-Digest-1.20-500.fc39.noarch                    95/159 
  Verifying        : perl-Digest-MD5-2.58-500.fc39.s390x                 96/159 
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  Verifying        : perl-Encode-4:3.19-500.fc39.s390x                   98/159 
  Verifying        : perl-Errno-1.37-500.fc39.s390x                      99/159 
  Verifying        : perl-Exporter-5.77-500.fc39.noarch                 100/159 
  Verifying        : perl-Fcntl-1.15-500.fc39.s390x                     101/159 
  Verifying        : perl-Fedora-VSP-0.001-32.fc39.noarch               102/159 
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  Verifying        : perl-File-stat-1.13-500.fc39.noarch                109/159 
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  Verifying        : perl-IO-1.52-500.fc39.s390x                        114/159 
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  Verifying        : perl-IPC-Open3-1.22-500.fc39.noarch                117/159 
  Verifying        : perl-MIME-Base64-3.16-500.fc39.s390x               118/159 
  Verifying        : perl-Mozilla-CA-20230821-1.fc40.noarch             119/159 
  Verifying        : perl-Net-SSLeay-1.92-10.fc39.s390x                 120/159 
  Verifying        : perl-POSIX-2.13-500.fc39.s390x                     121/159 
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  Verifying        : perl-Pod-Escapes-1:1.07-501.fc40.noarch            123/159 
  Verifying        : perl-Pod-Perldoc-3.28.01-501.fc39.noarch           124/159 
  Verifying        : perl-Pod-Simple-1:3.45-4.fc39.noarch               125/159 
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  Verifying        : perl-Scalar-List-Utils-5:1.63-500.fc39.s390x       127/159 
  Verifying        : perl-SelectSaver-1.02-500.fc39.noarch              128/159 
  Verifying        : perl-Socket-4:2.037-3.fc39.s390x                   129/159 
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  Verifying        : perl-Symbol-1.09-500.fc39.noarch                   131/159 
  Verifying        : perl-Term-ANSIColor-5.01-501.fc39.noarch           132/159 
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  Verifying        : perl-URI-5.21-1.fc40.noarch                        138/159 
  Verifying        : perl-base-2.27-500.fc39.noarch                     139/159 
  Verifying        : perl-constant-1.33-501.fc39.noarch                 140/159 
  Verifying        : perl-generators-1.16-3.fc39.noarch                 141/159 
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  Verifying        : perl-interpreter-4:5.38.0-500.fc39.s390x           143/159 
  Verifying        : perl-libnet-3.15-501.fc39.noarch                   144/159 
  Verifying        : perl-libs-4:5.38.0-500.fc39.s390x                  145/159 
  Verifying        : perl-locale-1.10-500.fc39.noarch                   146/159 
  Verifying        : perl-macros-4:5.38.0-500.fc39.noarch               147/159 
  Verifying        : perl-mro-1.28-500.fc39.s390x                       148/159 
  Verifying        : perl-overload-1.37-500.fc39.noarch                 149/159 
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  Verifying        : perl-threads-shared-1.68-500.fc39.s390x            154/159 
  Verifying        : perl-vars-1.05-500.fc39.noarch                     155/159 
  Verifying        : python-pip-wheel-23.2.1-1.fc39.noarch              156/159 
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  Verifying        : python3-libs-3.12.0~rc2-1.fc40.s390x               158/159 
  Verifying        : python3-numpy-1:1.24.4-2.fc39.s390x                159/159 

Installed:
  SuperLU-6.0.0-1.fc39.s390x                                                    
  SuperLU-devel-6.0.0-1.fc39.s390x                                              
  annobin-docs-12.26-1.fc40.noarch                                              
  annobin-plugin-gcc-12.26-1.fc40.s390x                                         
  armadillo-10.8.2-5.fc39.s390x                                                 
  armadillo-devel-10.8.2-5.fc39.s390x                                           
  arpack-3.8.0-7.fc39.s390x                                                     
  arpack-devel-3.8.0-7.fc39.s390x                                               
  autoconf-2.71-7.fc40.noarch                                                   
  automake-1.16.5-14.fc40.noarch                                                
  boost-1.81.0-6.fc40.s390x                                                     
  boost-atomic-1.81.0-6.fc40.s390x                                              
  boost-chrono-1.81.0-6.fc40.s390x                                              
  boost-container-1.81.0-6.fc40.s390x                                           
  boost-context-1.81.0-6.fc40.s390x                                             
  boost-contract-1.81.0-6.fc40.s390x                                            
  boost-coroutine-1.81.0-6.fc40.s390x                                           
  boost-date-time-1.81.0-6.fc40.s390x                                           
  boost-devel-1.81.0-6.fc40.s390x                                               
  boost-fiber-1.81.0-6.fc40.s390x                                               
  boost-filesystem-1.81.0-6.fc40.s390x                                          
  boost-graph-1.81.0-6.fc40.s390x                                               
  boost-iostreams-1.81.0-6.fc40.s390x                                           
  boost-json-1.81.0-6.fc40.s390x                                                
  boost-locale-1.81.0-6.fc40.s390x                                              
  boost-log-1.81.0-6.fc40.s390x                                                 
  boost-math-1.81.0-6.fc40.s390x                                                
  boost-nowide-1.81.0-6.fc40.s390x                                              
  boost-numpy3-1.81.0-6.fc40.s390x                                              
  boost-program-options-1.81.0-6.fc40.s390x                                     
  boost-python3-1.81.0-6.fc40.s390x                                             
  boost-random-1.81.0-6.fc40.s390x                                              
  boost-regex-1.81.0-6.fc40.s390x                                               
  boost-serialization-1.81.0-6.fc40.s390x                                       
  boost-stacktrace-1.81.0-6.fc40.s390x                                          
  boost-system-1.81.0-6.fc40.s390x                                              
  boost-test-1.81.0-6.fc40.s390x                                                
  boost-thread-1.81.0-6.fc40.s390x                                              
  boost-timer-1.81.0-6.fc40.s390x                                               
  boost-type_erasure-1.81.0-6.fc40.s390x                                        
  boost-wave-1.81.0-6.fc40.s390x                                                
  cmake-filesystem-3.27.4-8.fc40.s390x                                          
  cpp-13.2.1-1.fc40.s390x                                                       
  emacs-filesystem-1:29.1-1.fc39.noarch                                         
  expat-2.5.0-3.fc39.s390x                                                      
  flexiblas-3.3.1-5.fc39.s390x                                                  
  flexiblas-devel-3.3.1-5.fc39.s390x                                            
  flexiblas-netlib-3.3.1-5.fc39.s390x                                           
  flexiblas-netlib64-3.3.1-5.fc39.s390x                                         
  flexiblas-openblas-openmp-3.3.1-5.fc39.s390x                                  
  flexiblas-openblas-openmp64-3.3.1-5.fc39.s390x                                
  gc-8.2.2-4.fc39.s390x                                                         
  gcc-13.2.1-1.fc40.s390x                                                       
  gcc-c++-13.2.1-1.fc40.s390x                                                   
  gcc-gfortran-13.2.1-1.fc40.s390x                                              
  gcc-plugin-annobin-13.2.1-1.fc40.s390x                                        
  glibc-devel-2.38.9000-8.fc40.s390x                                            
  glibc-headers-s390-2.38.9000-8.fc40.noarch                                    
  groff-base-1.23.0-2.fc39.s390x                                                
  gsl-2.7.1-5.fc39.s390x                                                        
  gsl-devel-2.7.1-5.fc39.s390x                                                  
  guile22-2.2.7-9.fc39.s390x                                                    
  hdf5-1.12.1-12.fc40.s390x                                                     
  hdf5-devel-1.12.1-12.fc40.s390x                                               
  htslib-1.15.1-3.fc40.s390x                                                    
  htslib-devel-1.15.1-3.fc40.s390x                                              
  kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x                                  
  libaec-1.0.6-5.fc39.s390x                                                     
  libaec-devel-1.0.6-5.fc39.s390x                                               
  libasan-13.2.1-1.fc40.s390x                                                   
  libatomic-13.2.1-1.fc40.s390x                                                 
  libb2-0.98.1-9.fc39.s390x                                                     
  libgfortran-13.2.1-1.fc40.s390x                                               
  libicu-73.2-2.fc39.s390x                                                      
  libicu-devel-73.2-2.fc39.s390x                                                
  libmpc-1.3.1-3.fc39.s390x                                                     
  libstdc++-devel-13.2.1-1.fc40.s390x                                           
  libtool-ltdl-2.4.7-8.fc40.s390x                                               
  libubsan-13.2.1-1.fc40.s390x                                                  
  libxcrypt-devel-4.4.36-2.fc39.s390x                                           
  m4-1.4.19-7.fc40.s390x                                                        
  make-1:4.4.1-2.fc39.s390x                                                     
  metis-5.1.0.3-2.fc39.s390x                                                    
  mpdecimal-2.5.1-7.fc39.s390x                                                  
  ncurses-6.4-7.20230520.fc40.s390x                                             
  openblas-0.3.21-6.fc39.s390x                                                  
  openblas-openmp-0.3.21-6.fc39.s390x                                           
  openblas-openmp64-0.3.21-6.fc39.s390x                                         
  perl-AutoLoader-5.74-500.fc39.noarch                                          
  perl-B-1.88-500.fc39.s390x                                                    
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-500.fc39.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.s390x                                         
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-500.fc39.s390x                                           
  perl-DynaLoader-1.54-500.fc39.s390x                                           
  perl-Encode-4:3.19-500.fc39.s390x                                             
  perl-Errno-1.37-500.fc39.s390x                                                
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-500.fc39.s390x                                                
  perl-Fedora-VSP-0.001-32.fc39.noarch                                          
  perl-File-Basename-2.86-500.fc39.noarch                                       
  perl-File-Compare-1.100.700-500.fc39.noarch                                   
  perl-File-Copy-2.41-500.fc39.noarch                                           
  perl-File-Find-1.43-500.fc39.noarch                                           
  perl-File-Path-2.18-500.fc39.noarch                                           
  perl-File-Temp-1:0.231.100-500.fc39.noarch                                    
  perl-File-stat-1.13-500.fc39.noarch                                           
  perl-FileHandle-2.05-500.fc39.noarch                                          
  perl-Getopt-Long-1:2.54-500.fc39.noarch                                       
  perl-Getopt-Std-1.13-500.fc39.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-500.fc39.s390x                                                   
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.083-3.fc39.noarch                                        
  perl-IPC-Open3-1.22-500.fc39.noarch                                           
  perl-MIME-Base64-3.16-500.fc39.s390x                                          
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.s390x                                            
  perl-POSIX-2.13-500.fc39.s390x                                                
  perl-PathTools-3.89-500.fc39.s390x                                            
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.s390x                                  
  perl-SelectSaver-1.02-500.fc39.noarch                                         
  perl-Socket-4:2.037-3.fc39.s390x                                              
  perl-Storable-1:3.32-500.fc39.s390x                                           
  perl-Symbol-1.09-500.fc39.noarch                                              
  perl-Term-ANSIColor-5.01-501.fc39.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Thread-Queue-3.14-501.fc40.noarch                                        
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-500.fc39.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-generators-1.16-3.fc39.noarch                                            
  perl-if-0.61.000-500.fc39.noarch                                              
  perl-interpreter-4:5.38.0-500.fc39.s390x                                      
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.0-500.fc39.s390x                                             
  perl-locale-1.10-500.fc39.noarch                                              
  perl-macros-4:5.38.0-500.fc39.noarch                                          
  perl-mro-1.28-500.fc39.s390x                                                  
  perl-overload-1.37-500.fc39.noarch                                            
  perl-overloading-0.02-500.fc39.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-threads-1:2.36-500.fc39.s390x                                            
  perl-threads-shared-1.68-500.fc39.s390x                                       
  perl-vars-1.05-500.fc39.noarch                                                
  python-pip-wheel-23.2.1-1.fc39.noarch                                         
  python3-3.12.0~rc2-1.fc40.s390x                                               
  python3-libs-3.12.0~rc2-1.fc40.s390x                                          
  python3-numpy-1:1.24.4-2.fc39.s390x                                           
  zlib-ng-compat-devel-2.1.3-3.fc40.s390x                                       

Complete!
Finish: build setup for mmseq-1.0.11-16.fc40.src.rpm
Start: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.w91itZ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Vf4ARC
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/cc4quc1e.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2cb4): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.lnPuPO
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-16.fc40 --unique-debug-suffix -1.0.11-16.fc40.s390x --unique-debug-src-base mmseq-1.0.11-16.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-16.fc40.s390x
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RnQv52
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-16.fc40.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.56TBFp
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/README.md /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/doc /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-16.fc40 mmseq(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.81.0()(64bit) libboost_regex.so.1.81.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-16.fc40.s390x
Provides: mmseq-debugsource = 1.0.11-16.fc40 mmseq-debugsource(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-16.fc40.s390x
Provides: debuginfo(build-id) = 1a2a7c44d5a5145293f545b1a77d38488e032b2a debuginfo(build-id) = 4e730584f796c3d9cd303c12178bce27e369ee6c debuginfo(build-id) = 62862133ea0548f98ccd275964b854ece0858edb debuginfo(build-id) = 6dbc61c4c0156452fbb0ee924dbcdbf6893d2a40 debuginfo(build-id) = a08ba5e5d9b70bbcdcc681ba7e03a498d21ed31e debuginfo(build-id) = e81662f7ab4a102b3ba31107e7bde696371e37ba debuginfo(build-id) = f43c705f3f21df53be754a2f60c53c45099fe629 debuginfo(build-id) = f478822aa74ed0597f0449962bf88116f1e9c1a5 mmseq-debuginfo = 1.0.11-16.fc40 mmseq-debuginfo(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(s390-64) = 1.0.11-16.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
Wrote: /builddir/build/RPMS/mmseq-1.0.11-16.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-16.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-16.fc40.s390x.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Z2r414
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.5ITCCE
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
Finish: build phase for mmseq-1.0.11-16.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1695081486.692554/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm) Config(child) 2 minutes 17 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "s390x"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "s390x"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "s390x"
        }
    ]
}
RPMResults finished