Warning: Permanently added '35.172.183.97' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8613964-amazonlinux-2023-aarch64 --chroot amazonlinux-2023-aarch64 Version: 1.2 PID: 8921 Logging PID: 8922 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 8613964, 'buildroot_pkgs': [], 'chroot': 'amazonlinux-2023-aarch64', 'enable_net': True, 'fedora_review': False, 'git_hash': 'bd525843fae2d66c0a9f7bff787e048b9e2e781d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/vkm7608/AL2023/autodocksuite', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'autodocksuite', 'package_version': '4.2.6-16', 'project_dirname': 'AL2023', 'project_name': 'AL2023', 'project_owner': 'vkm7608', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/vkm7608/AL2023/amazonlinux-2023-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'vkm7608/AL2023--vkm7608', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'vkm7608', 'tags': [], 'task_id': '8613964-amazonlinux-2023-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/vkm7608/AL2023/autodocksuite /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/vkm7608/AL2023/autodocksuite', '/var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite'... Running: git checkout bd525843fae2d66c0a9f7bff787e048b9e2e781d -- cmd: ['git', 'checkout', 'bd525843fae2d66c0a9f7bff787e048b9e2e781d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite rc: 0 stdout: stderr: Note: switching to 'bd525843fae2d66c0a9f7bff787e048b9e2e781d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at bd52584 automatic import of autodocksuite Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading autodocksuite-4.2.6-src.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o autodocksuite-4.2.6-src.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/vkm7608/AL2023/autodocksuite/autodocksuite-4.2.6-src.tar.gz/md5/f4942c8e8c47aca7f3a2ae8794259067/autodocksuite-4.2.6-src.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 33.7M 100 33.7M 0 0 51.3M 0 --:--:-- --:--:-- --:--:-- 51.4M INFO: Reading stdout from command: md5sum autodocksuite-4.2.6-src.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738861576.944076 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738861576.944076 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite/autodocksuite.spec) Config(amazonlinux-2023-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/amazonlinux-2023-aarch64-bootstrap-1738861576.944076/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: public.ecr.aws/amazonlinux/amazonlinux:2023 INFO: Pulling image: public.ecr.aws/amazonlinux/amazonlinux:2023 INFO: Tagging container image as mock-bootstrap-596dbd13-94c0-4a5b-886e-6ba552986edb INFO: Checking that be238af37d049ad8bae5fbd54c4bd5166d2bccb3105a3eb6db5a32cd4fbc60aa image matches host's architecture INFO: Copy content of container be238af37d049ad8bae5fbd54c4bd5166d2bccb3105a3eb6db5a32cd4fbc60aa to /var/lib/mock/amazonlinux-2023-aarch64-bootstrap-1738861576.944076/root INFO: mounting be238af37d049ad8bae5fbd54c4bd5166d2bccb3105a3eb6db5a32cd4fbc60aa with podman image mount INFO: image be238af37d049ad8bae5fbd54c4bd5166d2bccb3105a3eb6db5a32cd4fbc60aa as /var/lib/containers/storage/overlay/c0465479f74b257aa993ae5204c2e177d123b2f4f4f04f98db4732f75c866596/merged INFO: umounting image be238af37d049ad8bae5fbd54c4bd5166d2bccb3105a3eb6db5a32cd4fbc60aa (/var/lib/containers/storage/overlay/c0465479f74b257aa993ae5204c2e177d123b2f4f4f04f98db4732f75c866596/merged) with podman image umount INFO: Removing image mock-bootstrap-596dbd13-94c0-4a5b-886e-6ba552986edb INFO: Package manager dnf4 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.8 MB/s | 479 kB 00:00 Amazon Linux 2023 repository - aarch64 69 MB/s | 31 MB 00:00 Package python3-dnf-4.14.0-1.amzn2023.0.5.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.3.0-13.amzn2023.0.5 amazonlinux 232 k Installing dependencies: dbus-libs aarch64 1:1.12.28-1.amzn2023.0.1 amazonlinux 152 k python3-dateutil noarch 1:2.8.1-3.amzn2023.0.2 amazonlinux 289 k python3-dbus aarch64 1.2.18-1.amzn2023.0.2 amazonlinux 134 k python3-distro noarch 1.5.0-5.amzn2023.0.2 amazonlinux 36 k python3-setuptools noarch 59.6.0-2.amzn2023.0.5 amazonlinux 939 k python3-six noarch 1.15.0-5.amzn2023.0.2 amazonlinux 36 k python3-systemd aarch64 235-51.amzn2023.0.2 amazonlinux 91 k systemd-libs aarch64 252.23-2.amzn2023 amazonlinux 590 k Transaction Summary ================================================================================ Install 9 Packages Total download size: 2.4 M Installed size: 13 M Downloading Packages: (1/9): dbus-libs-1.12.28-1.amzn2023.0.1.aarch64 6.1 MB/s | 152 kB 00:00 (2/9): python3-dbus-1.2.18-1.amzn2023.0.2.aarch 5.1 MB/s | 134 kB 00:00 (3/9): python3-dateutil-2.8.1-3.amzn2023.0.2.no 10 MB/s | 289 kB 00:00 (4/9): python3-distro-1.5.0-5.amzn2023.0.2.noar 6.2 MB/s | 36 kB 00:00 (5/9): python3-dnf-plugins-core-4.3.0-13.amzn20 40 MB/s | 232 kB 00:00 (6/9): python3-setuptools-59.6.0-2.amzn2023.0.5 102 MB/s | 939 kB 00:00 (7/9): python3-six-1.15.0-5.amzn2023.0.2.noarch 5.6 MB/s | 36 kB 00:00 (8/9): python3-systemd-235-51.amzn2023.0.2.aarc 14 MB/s | 91 kB 00:00 (9/9): systemd-libs-252.23-2.amzn2023.aarch64.r 75 MB/s | 590 kB 00:00 -------------------------------------------------------------------------------- Total 7.6 MB/s | 2.4 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : systemd-libs-252.23-2.amzn2023.aarch64 1/9 Installing : dbus-libs-1:1.12.28-1.amzn2023.0.1.aarch64 2/9 Installing : python3-dbus-1.2.18-1.amzn2023.0.2.aarch64 3/9 Installing : python3-systemd-235-51.amzn2023.0.2.aarch64 4/9 Installing : python3-six-1.15.0-5.amzn2023.0.2.noarch 5/9 Installing : python3-dateutil-1:2.8.1-3.amzn2023.0.2.noarch 6/9 Installing : python3-setuptools-59.6.0-2.amzn2023.0.5.noarch 7/9 Installing : python3-distro-1.5.0-5.amzn2023.0.2.noarch 8/9 Installing : python3-dnf-plugins-core-4.3.0-13.amzn2023.0.5.noarc 9/9 Running scriptlet: python3-dnf-plugins-core-4.3.0-13.amzn2023.0.5.noarc 9/9 Verifying : dbus-libs-1:1.12.28-1.amzn2023.0.1.aarch64 1/9 Verifying : python3-dateutil-1:2.8.1-3.amzn2023.0.2.noarch 2/9 Verifying : python3-dbus-1.2.18-1.amzn2023.0.2.aarch64 3/9 Verifying : python3-distro-1.5.0-5.amzn2023.0.2.noarch 4/9 Verifying : python3-dnf-plugins-core-4.3.0-13.amzn2023.0.5.noarc 5/9 Verifying : python3-setuptools-59.6.0-2.amzn2023.0.5.noarch 6/9 Verifying : python3-six-1.15.0-5.amzn2023.0.2.noarch 7/9 Verifying : python3-systemd-235-51.amzn2023.0.2.aarch64 8/9 Verifying : systemd-libs-252.23-2.amzn2023.aarch64 9/9 Installed: dbus-libs-1:1.12.28-1.amzn2023.0.1.aarch64 python3-dateutil-1:2.8.1-3.amzn2023.0.2.noarch python3-dbus-1.2.18-1.amzn2023.0.2.aarch64 python3-distro-1.5.0-5.amzn2023.0.2.noarch python3-dnf-plugins-core-4.3.0-13.amzn2023.0.5.noarch python3-setuptools-59.6.0-2.amzn2023.0.5.noarch python3-six-1.15.0-5.amzn2023.0.2.noarch python3-systemd-235-51.amzn2023.0.2.aarch64 systemd-libs-252.23-2.amzn2023.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-29.amzn2023.0.6.aarch64 python3-dnf-4.14.0-1.amzn2023.0.5.noarch python3-dnf-plugins-core-4.3.0-13.amzn2023.0.5.noarch yum-4.14.0-1.amzn2023.0.5.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 MB/s | 481 kB 00:00 Amazon Linux 2023 repository - aarch64 125 MB/s | 31 MB 00:00 Dependencies resolved. ============================================================================================= Package Arch Version Repository Size ============================================================================================= Installing: amazon-rpm-config noarch 228-4.amzn2023.0.1 amazonlinux 67 k bash aarch64 5.2.15-1.amzn2023.0.2 amazonlinux 1.8 M bzip2 aarch64 1.0.8-6.amzn2023.0.2 amazonlinux 53 k coreutils aarch64 8.32-30.amzn2023.0.3 amazonlinux 1.2 M cpio aarch64 2.13-13.amzn2023.0.3 amazonlinux 271 k diffutils aarch64 3.8-1.amzn2023.0.2 amazonlinux 368 k findutils aarch64 1:4.8.0-2.amzn2023.0.2 amazonlinux 541 k gawk aarch64 5.1.0-3.amzn2023.0.3 amazonlinux 984 k glibc-minimal-langpack aarch64 2.34-117.amzn2023.0.1 amazonlinux 21 k grep aarch64 3.8-1.amzn2023.0.4 amazonlinux 282 k gzip aarch64 1.12-1.amzn2023.0.1 amazonlinux 158 k info aarch64 6.7-10.amzn2023.0.2 amazonlinux 224 k patch aarch64 2.7.6-14.amzn2023.0.2 amazonlinux 126 k rpm-build aarch64 4.16.1.3-29.amzn2023.0.6 amazonlinux 61 k sed aarch64 4.8-7.amzn2023.0.2 amazonlinux 295 k system-release noarch 2023.6.20250203-0.amzn2023 amazonlinux 28 k tar aarch64 2:1.34-1.amzn2023.0.4 amazonlinux 869 k unzip aarch64 6.0-57.amzn2023.0.2 amazonlinux 180 k util-linux aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 2.2 M which aarch64 2.21-26.amzn2023.0.2 amazonlinux 42 k xz aarch64 5.2.5-9.amzn2023.0.2 amazonlinux 216 k Installing dependencies: alternatives aarch64 1.15-2.amzn2023.0.2 amazonlinux 36 k amazon-linux-repo-cdn noarch 2023.6.20250203-0.amzn2023 amazonlinux 16 k audit-libs aarch64 3.0.6-1.amzn2023.0.2 amazonlinux 116 k basesystem noarch 11-11.amzn2023.0.2 amazonlinux 7.8 k binutils aarch64 2.39-6.amzn2023.0.10 amazonlinux 4.7 M bzip2-libs aarch64 1.0.8-6.amzn2023.0.2 amazonlinux 44 k ca-certificates noarch 2023.2.68-1.0.amzn2023.0.1 amazonlinux 735 k coreutils-common aarch64 8.32-30.amzn2023.0.3 amazonlinux 2.0 M cracklib aarch64 2.9.6-27.amzn2023.0.2 amazonlinux 83 k crypto-policies noarch 20240828-2.git626aa59.amzn2023.0.1 amazonlinux 56 k curl aarch64 8.5.0-1.amzn2023.0.4 amazonlinux 370 k cyrus-sasl-lib aarch64 2.1.27-18.amzn2023.0.3 amazonlinux 776 k debugedit aarch64 5.0-2.amzn2023.0.3 amazonlinux 76 k dwz aarch64 0.14-6.amzn2023.0.2 amazonlinux 127 k ed aarch64 1.14.2-10.amzn2023.0.2 amazonlinux 74 k efi-srpm-macros noarch 5-4.amzn2023.0.5 amazonlinux 23 k elfutils aarch64 0.188-3.amzn2023.0.2 amazonlinux 519 k elfutils-debuginfod-client aarch64 0.188-3.amzn2023.0.2 amazonlinux 41 k elfutils-default-yama-scope noarch 0.188-3.amzn2023.0.2 amazonlinux 17 k elfutils-libelf aarch64 0.188-3.amzn2023.0.2 amazonlinux 199 k elfutils-libs aarch64 0.188-3.amzn2023.0.2 amazonlinux 257 k file aarch64 5.39-7.amzn2023.0.4 amazonlinux 50 k file-libs aarch64 5.39-7.amzn2023.0.4 amazonlinux 587 k filesystem aarch64 3.14-5.amzn2023.0.3 amazonlinux 22 k fonts-srpm-macros noarch 1:2.0.5-12.amzn2023.0.2 amazonlinux 27 k gdb-minimal aarch64 12.1-5.amzn2023.0.4 amazonlinux 3.5 M gdbm-libs aarch64 1:1.19-2.amzn2023.0.2 amazonlinux 53 k ghc-srpm-macros noarch 1.5.0-4.amzn2023.0.2 amazonlinux 8.5 k glibc aarch64 2.34-117.amzn2023.0.1 amazonlinux 1.7 M glibc-common aarch64 2.34-117.amzn2023.0.1 amazonlinux 284 k glibc-gconv-extra aarch64 2.34-117.amzn2023.0.1 amazonlinux 1.9 M gmp aarch64 1:6.2.1-2.amzn2023.0.2 amazonlinux 276 k go-srpm-macros noarch 3.2.0-37.amzn2023 amazonlinux 26 k jansson aarch64 2.14-0.amzn2023 amazonlinux 47 k kernel-srpm-macros noarch 1.0-14.amzn2023.0.2 amazonlinux 10 k keyutils-libs aarch64 1.6.3-1.amzn2023.0.1 amazonlinux 32 k krb5-libs aarch64 1.21.3-1.amzn2023.0.1 amazonlinux 768 k libacl aarch64 2.3.1-2.amzn2023.0.2 amazonlinux 24 k libarchive aarch64 3.7.4-2.amzn2023.0.2 amazonlinux 411 k libattr aarch64 2.5.1-3.amzn2023.0.2 amazonlinux 19 k libblkid aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 105 k libbrotli aarch64 1.0.9-4.amzn2023.0.2 amazonlinux 316 k libcap aarch64 2.48-2.amzn2023.0.3 amazonlinux 68 k libcap-ng aarch64 0.8.2-4.amzn2023.0.2 amazonlinux 33 k libcom_err aarch64 1.46.5-2.amzn2023.0.2 amazonlinux 27 k libcurl aarch64 8.5.0-1.amzn2023.0.4 amazonlinux 342 k libdb aarch64 5.3.28-49.amzn2023.0.2 amazonlinux 731 k libeconf aarch64 0.4.0-1.amzn2023.0.3 amazonlinux 27 k libfdisk aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 148 k libffi aarch64 3.4.4-1.amzn2023.0.1 amazonlinux 37 k libgcc aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 87 k libgomp aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 262 k libidn2 aarch64 2.3.2-1.amzn2023.0.5 amazonlinux 105 k libmount aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 130 k libnghttp2 aarch64 1.59.0-3.amzn2023.0.1 amazonlinux 78 k libpkgconf aarch64 1.8.0-4.amzn2023.0.2 amazonlinux 37 k libpsl aarch64 0.21.1-3.amzn2023.0.2 amazonlinux 61 k libpwquality aarch64 1.4.4-6.amzn2023.0.2 amazonlinux 106 k libselinux aarch64 3.4-5.amzn2023.0.2 amazonlinux 87 k libsemanage aarch64 3.4-5.amzn2023.0.2 amazonlinux 119 k libsepol aarch64 3.4-3.amzn2023.0.3 amazonlinux 311 k libsigsegv aarch64 2.13-2.amzn2023.0.2 amazonlinux 28 k libsmartcols aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 60 k libssh aarch64 0.10.6-1.amzn2023.0.1 amazonlinux 215 k libssh-config noarch 0.10.6-1.amzn2023.0.1 amazonlinux 11 k libstdc++ aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 691 k libtasn1 aarch64 4.19.0-1.amzn2023.0.4 amazonlinux 75 k libunistring aarch64 0.9.10-10.amzn2023.0.2 amazonlinux 493 k libutempter aarch64 1.2.1-4.amzn2023.0.2 amazonlinux 27 k libuuid aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 26 k libverto aarch64 0.3.2-1.amzn2023.0.2 amazonlinux 22 k libxcrypt aarch64 4.4.33-7.amzn2023 amazonlinux 127 k libxml2 aarch64 2.10.4-1.amzn2023.0.7 amazonlinux 690 k libzstd aarch64 1.5.5-1.amzn2023.0.1 amazonlinux 284 k lua-libs aarch64 5.4.4-3.amzn2023.0.2 amazonlinux 214 k lua-srpm-macros noarch 1-4.amzn2023.0.2 amazonlinux 9.2 k lz4-libs aarch64 1.9.4-1.amzn2023.0.2 amazonlinux 73 k mpfr aarch64 4.1.0-7.amzn2023.0.2 amazonlinux 243 k ncurses-base noarch 6.2-4.20200222.amzn2023.0.6 amazonlinux 60 k ncurses-libs aarch64 6.2-4.20200222.amzn2023.0.6 amazonlinux 318 k ocaml-srpm-macros noarch 6-6.amzn2023.0.2 amazonlinux 8.8 k openblas-srpm-macros noarch 2-9.amzn2023.0.2 amazonlinux 8.2 k openldap aarch64 2.4.57-6.amzn2023.0.6 amazonlinux 254 k openssl-libs aarch64 1:3.0.8-1.amzn2023.0.18 amazonlinux 2.1 M p11-kit aarch64 0.24.1-2.amzn2023.0.3 amazonlinux 346 k p11-kit-trust aarch64 0.24.1-2.amzn2023.0.3 amazonlinux 138 k package-notes-srpm-macros noarch 0.4-18.amzn2023.0.5 amazonlinux 13 k pam aarch64 1.5.1-8.amzn2023.0.4 amazonlinux 553 k pcre2 aarch64 10.40-1.amzn2023.0.3 amazonlinux 220 k pcre2-syntax noarch 10.40-1.amzn2023.0.3 amazonlinux 142 k perl-srpm-macros noarch 1-39.amzn2023.0.2 amazonlinux 8.7 k pkgconf aarch64 1.8.0-4.amzn2023.0.2 amazonlinux 43 k pkgconf-m4 noarch 1.8.0-4.amzn2023.0.2 amazonlinux 15 k pkgconf-pkg-config aarch64 1.8.0-4.amzn2023.0.2 amazonlinux 11 k popt aarch64 1.18-6.amzn2023.0.2 amazonlinux 59 k publicsuffix-list-dafsa noarch 20240212-61.amzn2023 amazonlinux 59 k python-srpm-macros noarch 3.9-41.amzn2023.0.6 amazonlinux 20 k readline aarch64 8.1-2.amzn2023.0.2 amazonlinux 212 k rpm aarch64 4.16.1.3-29.amzn2023.0.6 amazonlinux 485 k rpm-build-libs aarch64 4.16.1.3-29.amzn2023.0.6 amazonlinux 88 k rpm-libs aarch64 4.16.1.3-29.amzn2023.0.6 amazonlinux 308 k rust-srpm-macros noarch 21-42.amzn2023.0.2 amazonlinux 10 k setup noarch 2.13.7-3.amzn2023.0.2 amazonlinux 141 k shadow-utils aarch64 2:4.9-12.amzn2023.0.4 amazonlinux 1.1 M sqlite-libs aarch64 3.40.0-1.amzn2023.0.4 amazonlinux 660 k systemd-libs aarch64 252.23-2.amzn2023 amazonlinux 590 k util-linux-core aarch64 2.37.4-1.amzn2023.0.4 amazonlinux 437 k xxhash-libs aarch64 0.8.0-3.amzn2023.0.2 amazonlinux 32 k xz-libs aarch64 5.2.5-9.amzn2023.0.2 amazonlinux 92 k zip aarch64 3.0-28.amzn2023.0.2 amazonlinux 254 k zlib aarch64 1.2.11-33.amzn2023.0.5 amazonlinux 91 k zstd aarch64 1.5.5-1.amzn2023.0.1 amazonlinux 450 k Transaction Summary ============================================================================================= Install 133 Packages Total download size: 45 M Installed size: 284 M Downloading Packages: (1/133): amazon-linux-repo-cdn-2023.6.20250203- 789 kB/s | 16 kB 00:00 (2/133): amazon-rpm-config-228-4.amzn2023.0.1.n 2.9 MB/s | 67 kB 00:00 (3/133): alternatives-1.15-2.amzn2023.0.2.aarch 1.5 MB/s | 36 kB 00:00 (4/133): audit-libs-3.0.6-1.amzn2023.0.2.aarch6 17 MB/s | 116 kB 00:00 (5/133): basesystem-11-11.amzn2023.0.2.noarch.r 1.5 MB/s | 7.8 kB 00:00 (6/133): bash-5.2.15-1.amzn2023.0.2.aarch64.rpm 143 MB/s | 1.8 MB 00:00 (7/133): bzip2-1.0.8-6.amzn2023.0.2.aarch64.rpm 5.3 MB/s | 53 kB 00:00 (8/133): bzip2-libs-1.0.8-6.amzn2023.0.2.aarch6 5.3 MB/s | 44 kB 00:00 (9/133): ca-certificates-2023.2.68-1.0.amzn2023 67 MB/s | 735 kB 00:00 (10/133): binutils-2.39-6.amzn2023.0.10.aarch64 151 MB/s | 4.7 MB 00:00 (11/133): coreutils-8.32-30.amzn2023.0.3.aarch6 68 MB/s | 1.2 MB 00:00 (12/133): coreutils-common-8.32-30.amzn2023.0.3 117 MB/s | 2.0 MB 00:00 (13/133): cracklib-2.9.6-27.amzn2023.0.2.aarch6 14 MB/s | 83 kB 00:00 (14/133): cpio-2.13-13.amzn2023.0.3.aarch64.rpm 26 MB/s | 271 kB 00:00 (15/133): crypto-policies-20240828-2.git626aa59 7.5 MB/s | 56 kB 00:00 (16/133): curl-8.5.0-1.amzn2023.0.4.aarch64.rpm 54 MB/s | 370 kB 00:00 (17/133): debugedit-5.0-2.amzn2023.0.3.aarch64. 10 MB/s | 76 kB 00:00 (18/133): cyrus-sasl-lib-2.1.27-18.amzn2023.0.3 56 MB/s | 776 kB 00:00 (19/133): diffutils-3.8-1.amzn2023.0.2.aarch64. 33 MB/s | 368 kB 00:00 (20/133): dwz-0.14-6.amzn2023.0.2.aarch64.rpm 16 MB/s | 127 kB 00:00 (21/133): ed-1.14.2-10.amzn2023.0.2.aarch64.rpm 14 MB/s | 74 kB 00:00 (22/133): efi-srpm-macros-5-4.amzn2023.0.5.noar 4.0 MB/s | 23 kB 00:00 (23/133): elfutils-debuginfod-client-0.188-3.am 8.1 MB/s | 41 kB 00:00 (24/133): elfutils-0.188-3.amzn2023.0.2.aarch64 45 MB/s | 519 kB 00:00 (25/133): elfutils-default-yama-scope-0.188-3.a 2.8 MB/s | 17 kB 00:00 (26/133): elfutils-libelf-0.188-3.amzn2023.0.2. 31 MB/s | 199 kB 00:00 (27/133): file-5.39-7.amzn2023.0.4.aarch64.rpm 8.5 MB/s | 50 kB 00:00 (28/133): elfutils-libs-0.188-3.amzn2023.0.2.aa 33 MB/s | 257 kB 00:00 (29/133): file-libs-5.39-7.amzn2023.0.4.aarch64 70 MB/s | 587 kB 00:00 (30/133): filesystem-3.14-5.amzn2023.0.3.aarch6 3.7 MB/s | 22 kB 00:00 (31/133): fonts-srpm-macros-2.0.5-12.amzn2023.0 4.2 MB/s | 27 kB 00:00 (32/133): findutils-4.8.0-2.amzn2023.0.2.aarch6 48 MB/s | 541 kB 00:00 (33/133): gawk-5.1.0-3.amzn2023.0.3.aarch64.rpm 67 MB/s | 984 kB 00:00 (34/133): gdbm-libs-1.19-2.amzn2023.0.2.aarch64 6.6 MB/s | 53 kB 00:00 (35/133): ghc-srpm-macros-1.5.0-4.amzn2023.0.2. 2.5 MB/s | 8.5 kB 00:00 (36/133): gdb-minimal-12.1-5.amzn2023.0.4.aarch 116 MB/s | 3.5 MB 00:00 (37/133): glibc-2.34-117.amzn2023.0.1.aarch64.r 74 MB/s | 1.7 MB 00:00 (38/133): glibc-common-2.34-117.amzn2023.0.1.aa 14 MB/s | 284 kB 00:00 (39/133): glibc-minimal-langpack-2.34-117.amzn2 4.7 MB/s | 21 kB 00:00 (40/133): gmp-6.2.1-2.amzn2023.0.2.aarch64.rpm 42 MB/s | 276 kB 00:00 (41/133): go-srpm-macros-3.2.0-37.amzn2023.noar 3.9 MB/s | 26 kB 00:00 (42/133): glibc-gconv-extra-2.34-117.amzn2023.0 103 MB/s | 1.9 MB 00:00 (43/133): grep-3.8-1.amzn2023.0.4.aarch64.rpm 22 MB/s | 282 kB 00:00 (44/133): gzip-1.12-1.amzn2023.0.1.aarch64.rpm 18 MB/s | 158 kB 00:00 (45/133): info-6.7-10.amzn2023.0.2.aarch64.rpm 37 MB/s | 224 kB 00:00 (46/133): jansson-2.14-0.amzn2023.aarch64.rpm 9.5 MB/s | 47 kB 00:00 (47/133): kernel-srpm-macros-1.0-14.amzn2023.0. 2.2 MB/s | 10 kB 00:00 (48/133): keyutils-libs-1.6.3-1.amzn2023.0.1.aa 5.9 MB/s | 32 kB 00:00 (49/133): krb5-libs-1.21.3-1.amzn2023.0.1.aarch 113 MB/s | 768 kB 00:00 (50/133): libacl-2.3.1-2.amzn2023.0.2.aarch64.r 3.5 MB/s | 24 kB 00:00 (51/133): libarchive-3.7.4-2.amzn2023.0.2.aarch 49 MB/s | 411 kB 00:00 (52/133): libattr-2.5.1-3.amzn2023.0.2.aarch64. 3.9 MB/s | 19 kB 00:00 (53/133): libblkid-2.37.4-1.amzn2023.0.4.aarch6 20 MB/s | 105 kB 00:00 (54/133): libbrotli-1.0.9-4.amzn2023.0.2.aarch6 59 MB/s | 316 kB 00:00 (55/133): libcap-ng-0.8.2-4.amzn2023.0.2.aarch6 7.1 MB/s | 33 kB 00:00 (56/133): libcom_err-1.46.5-2.amzn2023.0.2.aarc 7.4 MB/s | 27 kB 00:00 (57/133): libcap-2.48-2.amzn2023.0.3.aarch64.rp 7.3 MB/s | 68 kB 00:00 (58/133): libcurl-8.5.0-1.amzn2023.0.4.aarch64. 62 MB/s | 342 kB 00:00 (59/133): libdb-5.3.28-49.amzn2023.0.2.aarch64. 98 MB/s | 731 kB 00:00 (60/133): libeconf-0.4.0-1.amzn2023.0.3.aarch64 3.6 MB/s | 27 kB 00:00 (61/133): libfdisk-2.37.4-1.amzn2023.0.4.aarch6 22 MB/s | 148 kB 00:00 (62/133): libffi-3.4.4-1.amzn2023.0.1.aarch64.r 8.1 MB/s | 37 kB 00:00 (63/133): libgcc-11.4.1-2.amzn2023.0.2.aarch64. 19 MB/s | 87 kB 00:00 (64/133): libgomp-11.4.1-2.amzn2023.0.2.aarch64 43 MB/s | 262 kB 00:00 (65/133): libmount-2.37.4-1.amzn2023.0.4.aarch6 25 MB/s | 130 kB 00:00 (66/133): libidn2-2.3.2-1.amzn2023.0.5.aarch64. 15 MB/s | 105 kB 00:00 (67/133): libnghttp2-1.59.0-3.amzn2023.0.1.aarc 16 MB/s | 78 kB 00:00 (68/133): libpsl-0.21.1-3.amzn2023.0.2.aarch64. 13 MB/s | 61 kB 00:00 (69/133): libpkgconf-1.8.0-4.amzn2023.0.2.aarch 5.2 MB/s | 37 kB 00:00 (70/133): libpwquality-1.4.4-6.amzn2023.0.2.aar 16 MB/s | 106 kB 00:00 (71/133): libselinux-3.4-5.amzn2023.0.2.aarch64 12 MB/s | 87 kB 00:00 (72/133): libsepol-3.4-3.amzn2023.0.3.aarch64.r 46 MB/s | 311 kB 00:00 (73/133): libsemanage-3.4-5.amzn2023.0.2.aarch6 13 MB/s | 119 kB 00:00 (74/133): libsigsegv-2.13-2.amzn2023.0.2.aarch6 5.7 MB/s | 28 kB 00:00 (75/133): libsmartcols-2.37.4-1.amzn2023.0.4.aa 10 MB/s | 60 kB 00:00 (76/133): libssh-0.10.6-1.amzn2023.0.1.aarch64. 39 MB/s | 215 kB 00:00 (77/133): libssh-config-0.10.6-1.amzn2023.0.1.n 1.7 MB/s | 11 kB 00:00 (78/133): libstdc++-11.4.1-2.amzn2023.0.2.aarch 86 MB/s | 691 kB 00:00 (79/133): libtasn1-4.19.0-1.amzn2023.0.4.aarch6 10 MB/s | 75 kB 00:00 (80/133): libunistring-0.9.10-10.amzn2023.0.2.a 65 MB/s | 493 kB 00:00 (81/133): libutempter-1.2.1-4.amzn2023.0.2.aarc 4.1 MB/s | 27 kB 00:00 (82/133): libuuid-2.37.4-1.amzn2023.0.4.aarch64 4.3 MB/s | 26 kB 00:00 (83/133): libverto-0.3.2-1.amzn2023.0.2.aarch64 4.0 MB/s | 22 kB 00:00 (84/133): libxml2-2.10.4-1.amzn2023.0.7.aarch64 99 MB/s | 690 kB 00:00 (85/133): libzstd-1.5.5-1.amzn2023.0.1.aarch64. 38 MB/s | 284 kB 00:00 (86/133): libxcrypt-4.4.33-7.amzn2023.aarch64.r 13 MB/s | 127 kB 00:00 (87/133): lua-libs-5.4.4-3.amzn2023.0.2.aarch64 23 MB/s | 214 kB 00:00 (88/133): lz4-libs-1.9.4-1.amzn2023.0.2.aarch64 8.5 MB/s | 73 kB 00:00 (89/133): lua-srpm-macros-1-4.amzn2023.0.2.noar 779 kB/s | 9.2 kB 00:00 (90/133): mpfr-4.1.0-7.amzn2023.0.2.aarch64.rpm 45 MB/s | 243 kB 00:00 (91/133): ncurses-base-6.2-4.20200222.amzn2023. 11 MB/s | 60 kB 00:00 (92/133): ncurses-libs-6.2-4.20200222.amzn2023. 40 MB/s | 318 kB 00:00 (93/133): ocaml-srpm-macros-6-6.amzn2023.0.2.no 1.4 MB/s | 8.8 kB 00:00 (94/133): openblas-srpm-macros-2-9.amzn2023.0.2 1.4 MB/s | 8.2 kB 00:00 (95/133): openldap-2.4.57-6.amzn2023.0.6.aarch6 46 MB/s | 254 kB 00:00 (96/133): p11-kit-0.24.1-2.amzn2023.0.3.aarch64 44 MB/s | 346 kB 00:00 (97/133): openssl-libs-3.0.8-1.amzn2023.0.18.aa 128 MB/s | 2.1 MB 00:00 (98/133): package-notes-srpm-macros-0.4-18.amzn 1.2 MB/s | 13 kB 00:00 (99/133): p11-kit-trust-0.24.1-2.amzn2023.0.3.a 8.8 MB/s | 138 kB 00:00 (100/133): patch-2.7.6-14.amzn2023.0.2.aarch64. 21 MB/s | 126 kB 00:00 (101/133): pam-1.5.1-8.amzn2023.0.4.aarch64.rpm 47 MB/s | 553 kB 00:00 (102/133): pcre2-syntax-10.40-1.amzn2023.0.3.no 29 MB/s | 142 kB 00:00 (103/133): perl-srpm-macros-1-39.amzn2023.0.2.n 2.5 MB/s | 8.7 kB 00:00 (104/133): pcre2-10.40-1.amzn2023.0.3.aarch64.r 17 MB/s | 220 kB 00:00 (105/133): pkgconf-1.8.0-4.amzn2023.0.2.aarch64 9.6 MB/s | 43 kB 00:00 (106/133): pkgconf-m4-1.8.0-4.amzn2023.0.2.noar 3.7 MB/s | 15 kB 00:00 (107/133): pkgconf-pkg-config-1.8.0-4.amzn2023. 3.0 MB/s | 11 kB 00:00 (108/133): popt-1.18-6.amzn2023.0.2.aarch64.rpm 12 MB/s | 59 kB 00:00 (109/133): publicsuffix-list-dafsa-20240212-61. 12 MB/s | 59 kB 00:00 (110/133): python-srpm-macros-3.9-41.amzn2023.0 4.6 MB/s | 20 kB 00:00 (111/133): rpm-4.16.1.3-29.amzn2023.0.6.aarch64 88 MB/s | 485 kB 00:00 (112/133): readline-8.1-2.amzn2023.0.2.aarch64. 29 MB/s | 212 kB 00:00 (113/133): rpm-build-4.16.1.3-29.amzn2023.0.6.a 9.0 MB/s | 61 kB 00:00 (114/133): rpm-build-libs-4.16.1.3-29.amzn2023. 20 MB/s | 88 kB 00:00 (115/133): rust-srpm-macros-21-42.amzn2023.0.2. 2.6 MB/s | 10 kB 00:00 (116/133): rpm-libs-4.16.1.3-29.amzn2023.0.6.aa 54 MB/s | 308 kB 00:00 (117/133): setup-2.13.7-3.amzn2023.0.2.noarch.r 33 MB/s | 141 kB 00:00 (118/133): sed-4.8-7.amzn2023.0.2.aarch64.rpm 45 MB/s | 295 kB 00:00 (119/133): shadow-utils-4.9-12.amzn2023.0.4.aar 115 MB/s | 1.1 MB 00:00 (120/133): sqlite-libs-3.40.0-1.amzn2023.0.4.aa 74 MB/s | 660 kB 00:00 (121/133): system-release-2023.6.20250203-0.amz 3.6 MB/s | 28 kB 00:00 (122/133): systemd-libs-252.23-2.amzn2023.aarch 103 MB/s | 590 kB 00:00 (123/133): tar-1.34-1.amzn2023.0.4.aarch64.rpm 107 MB/s | 869 kB 00:00 (124/133): unzip-6.0-57.amzn2023.0.2.aarch64.rp 21 MB/s | 180 kB 00:00 (125/133): which-2.21-26.amzn2023.0.2.aarch64.r 4.3 MB/s | 42 kB 00:00 (126/133): util-linux-2.37.4-1.amzn2023.0.4.aar 136 MB/s | 2.2 MB 00:00 (127/133): util-linux-core-2.37.4-1.amzn2023.0. 30 MB/s | 437 kB 00:00 (128/133): xxhash-libs-0.8.0-3.amzn2023.0.2.aar 5.1 MB/s | 32 kB 00:00 (129/133): xz-5.2.5-9.amzn2023.0.2.aarch64.rpm 37 MB/s | 216 kB 00:00 (130/133): xz-libs-5.2.5-9.amzn2023.0.2.aarch64 16 MB/s | 92 kB 00:00 (131/133): zip-3.0-28.amzn2023.0.2.aarch64.rpm 36 MB/s | 254 kB 00:00 (132/133): zlib-1.2.11-33.amzn2023.0.5.aarch64. 21 MB/s | 91 kB 00:00 (133/133): zstd-1.5.5-1.amzn2023.0.1.aarch64.rp 67 MB/s | 450 kB 00:00 -------------------------------------------------------------------------------- Total 91 MB/s | 45 MB 00:00 Amazon Linux 2023 repository - aarch64 1.7 MB/s | 1.8 kB 00:00 Importing GPG key 0xD832C631: Userid : "Amazon Linux " Fingerprint: B21C 50FA 44A9 9720 EAA7 2F7F E951 904A D832 C631 From : /usr/share/distribution-gpg-keys/amazon-linux/RPM-GPG-KEY-amazon-linux-2023 Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-5.amzn2023.0.3.aarch64 1/1 Preparing : 1/1 Installing : libgcc-11.4.1-2.amzn2023.0.2.aarch64 1/133 Running scriptlet: libgcc-11.4.1-2.amzn2023.0.2.aarch64 1/133 Installing : rust-srpm-macros-21-42.amzn2023.0.2.noarch 2/133 Installing : publicsuffix-list-dafsa-20240212-61.amzn2023.noa 3/133 Installing : pkgconf-m4-1.8.0-4.amzn2023.0.2.noarch 4/133 Installing : perl-srpm-macros-1-39.amzn2023.0.2.noarch 5/133 Installing : pcre2-syntax-10.40-1.amzn2023.0.3.noarch 6/133 Installing : openblas-srpm-macros-2-9.amzn2023.0.2.noarch 7/133 Installing : ocaml-srpm-macros-6-6.amzn2023.0.2.noarch 8/133 Installing : ncurses-base-6.2-4.20200222.amzn2023.0.6.noarch 9/133 Installing : ncurses-libs-6.2-4.20200222.amzn2023.0.6.aarch64 10/133 Installing : amazon-linux-repo-cdn-2023.6.20250203-0.amzn2023 11/133 Installing : bash-5.2.15-1.amzn2023.0.2.aarch64 12/133 Running scriptlet: bash-5.2.15-1.amzn2023.0.2.aarch64 12/133 Installing : system-release-2023.6.20250203-0.amzn2023.noarch 13/133 Installing : setup-2.13.7-3.amzn2023.0.2.noarch 14/133 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-3.amzn2023.0.2.noarch 14/133 Installing : filesystem-3.14-5.amzn2023.0.3.aarch64 15/133 Installing : basesystem-11-11.amzn2023.0.2.noarch 16/133 Installing : glibc-gconv-extra-2.34-117.amzn2023.0.1.aarch64 17/133 Running scriptlet: glibc-gconv-extra-2.34-117.amzn2023.0.1.aarch64 17/133 Installing : glibc-minimal-langpack-2.34-117.amzn2023.0.1.aar 18/133 Installing : glibc-common-2.34-117.amzn2023.0.1.aarch64 19/133 Running scriptlet: glibc-2.34-117.amzn2023.0.1.aarch64 20/133 Installing : glibc-2.34-117.amzn2023.0.1.aarch64 20/133 Running scriptlet: glibc-2.34-117.amzn2023.0.1.aarch64 20/133 Installing : zlib-1.2.11-33.amzn2023.0.5.aarch64 21/133 Installing : xz-libs-5.2.5-9.amzn2023.0.2.aarch64 22/133 Installing : bzip2-libs-1.0.8-6.amzn2023.0.2.aarch64 23/133 Installing : elfutils-libelf-0.188-3.amzn2023.0.2.aarch64 24/133 Installing : libuuid-2.37.4-1.amzn2023.0.4.aarch64 25/133 Installing : gmp-1:6.2.1-2.amzn2023.0.2.aarch64 26/133 Installing : libattr-2.5.1-3.amzn2023.0.2.aarch64 27/133 Installing : libacl-2.3.1-2.amzn2023.0.2.aarch64 28/133 Installing : libcap-2.48-2.amzn2023.0.3.aarch64 29/133 Installing : libxcrypt-4.4.33-7.amzn2023.aarch64 30/133 Installing : libzstd-1.5.5-1.amzn2023.0.1.aarch64 31/133 Installing : popt-1.18-6.amzn2023.0.2.aarch64 32/133 Installing : libstdc++-11.4.1-2.amzn2023.0.2.aarch64 33/133 Installing : readline-8.1-2.amzn2023.0.2.aarch64 34/133 Installing : crypto-policies-20240828-2.git626aa59.amzn2023.0 35/133 Running scriptlet: crypto-policies-20240828-2.git626aa59.amzn2023.0 35/133 Installing : systemd-libs-252.23-2.amzn2023.aarch64 36/133 Installing : mpfr-4.1.0-7.amzn2023.0.2.aarch64 37/133 Installing : dwz-0.14-6.amzn2023.0.2.aarch64 38/133 Installing : unzip-6.0-57.amzn2023.0.2.aarch64 39/133 Installing : file-libs-5.39-7.amzn2023.0.4.aarch64 40/133 Installing : file-5.39-7.amzn2023.0.4.aarch64 41/133 Installing : sqlite-libs-3.40.0-1.amzn2023.0.4.aarch64 42/133 Installing : alternatives-1.15-2.amzn2023.0.2.aarch64 43/133 Installing : libcap-ng-0.8.2-4.amzn2023.0.2.aarch64 44/133 Installing : audit-libs-3.0.6-1.amzn2023.0.2.aarch64 45/133 Installing : libcom_err-1.46.5-2.amzn2023.0.2.aarch64 46/133 Installing : libsepol-3.4-3.amzn2023.0.3.aarch64 47/133 Installing : libsmartcols-2.37.4-1.amzn2023.0.4.aarch64 48/133 Installing : libunistring-0.9.10-10.amzn2023.0.2.aarch64 49/133 Installing : libidn2-2.3.2-1.amzn2023.0.5.aarch64 50/133 Installing : lua-libs-5.4.4-3.amzn2023.0.2.aarch64 51/133 Installing : lz4-libs-1.9.4-1.amzn2023.0.2.aarch64 52/133 Installing : pcre2-10.40-1.amzn2023.0.3.aarch64 53/133 Installing : libselinux-3.4-5.amzn2023.0.2.aarch64 54/133 Installing : sed-4.8-7.amzn2023.0.2.aarch64 55/133 Installing : grep-3.8-1.amzn2023.0.4.aarch64 56/133 Installing : findutils-1:4.8.0-2.amzn2023.0.2.aarch64 57/133 Installing : xz-5.2.5-9.amzn2023.0.2.aarch64 58/133 Installing : libsemanage-3.4-5.amzn2023.0.2.aarch64 59/133 Installing : shadow-utils-2:4.9-12.amzn2023.0.4.aarch64 60/133 Running scriptlet: libutempter-1.2.1-4.amzn2023.0.2.aarch64 61/133 Installing : libutempter-1.2.1-4.amzn2023.0.2.aarch64 61/133 Installing : tar-2:1.34-1.amzn2023.0.4.aarch64 62/133 Installing : zstd-1.5.5-1.amzn2023.0.1.aarch64 63/133 Installing : libpsl-0.21.1-3.amzn2023.0.2.aarch64 64/133 Installing : zip-3.0-28.amzn2023.0.2.aarch64 65/133 Installing : bzip2-1.0.8-6.amzn2023.0.2.aarch64 66/133 Installing : libxml2-2.10.4-1.amzn2023.0.7.aarch64 67/133 Installing : info-6.7-10.amzn2023.0.2.aarch64 68/133 Installing : ed-1.14.2-10.amzn2023.0.2.aarch64 69/133 Installing : patch-2.7.6-14.amzn2023.0.2.aarch64 70/133 Installing : cpio-2.13-13.amzn2023.0.3.aarch64 71/133 Installing : diffutils-3.8-1.amzn2023.0.2.aarch64 72/133 Installing : gdbm-libs-1:1.19-2.amzn2023.0.2.aarch64 73/133 Installing : jansson-2.14-0.amzn2023.aarch64 74/133 Installing : keyutils-libs-1.6.3-1.amzn2023.0.1.aarch64 75/133 Installing : libbrotli-1.0.9-4.amzn2023.0.2.aarch64 76/133 Installing : libdb-5.3.28-49.amzn2023.0.2.aarch64 77/133 Installing : libeconf-0.4.0-1.amzn2023.0.3.aarch64 78/133 Installing : libffi-3.4.4-1.amzn2023.0.1.aarch64 79/133 Installing : p11-kit-0.24.1-2.amzn2023.0.3.aarch64 80/133 Installing : libgomp-11.4.1-2.amzn2023.0.2.aarch64 81/133 Installing : libnghttp2-1.59.0-3.amzn2023.0.1.aarch64 82/133 Installing : libpkgconf-1.8.0-4.amzn2023.0.2.aarch64 83/133 Installing : libsigsegv-2.13-2.amzn2023.0.2.aarch64 84/133 Installing : gawk-5.1.0-3.amzn2023.0.3.aarch64 85/133 Installing : libtasn1-4.19.0-1.amzn2023.0.4.aarch64 86/133 Installing : p11-kit-trust-0.24.1-2.amzn2023.0.3.aarch64 87/133 Running scriptlet: p11-kit-trust-0.24.1-2.amzn2023.0.3.aarch64 87/133 Installing : libverto-0.3.2-1.amzn2023.0.2.aarch64 88/133 Installing : xxhash-libs-0.8.0-3.amzn2023.0.2.aarch64 89/133 Installing : elfutils-default-yama-scope-0.188-3.amzn2023.0.2 90/133 Running scriptlet: elfutils-default-yama-scope-0.188-3.amzn2023.0.2 90/133 Installing : package-notes-srpm-macros-0.4-18.amzn2023.0.5.no 91/133 Installing : libssh-config-0.10.6-1.amzn2023.0.1.noarch 92/133 Installing : kernel-srpm-macros-1.0-14.amzn2023.0.2.noarch 93/133 Installing : ghc-srpm-macros-1.5.0-4.amzn2023.0.2.noarch 94/133 Installing : coreutils-common-8.32-30.amzn2023.0.3.aarch64 95/133 Installing : openssl-libs-1:3.0.8-1.amzn2023.0.18.aarch64 96/133 Installing : coreutils-8.32-30.amzn2023.0.3.aarch64 97/133 Running scriptlet: ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarc 98/133 Installing : ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarc 98/133 Running scriptlet: ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarc 98/133 Installing : libblkid-2.37.4-1.amzn2023.0.4.aarch64 99/133 Running scriptlet: libblkid-2.37.4-1.amzn2023.0.4.aarch64 99/133 Installing : krb5-libs-1.21.3-1.amzn2023.0.1.aarch64 100/133 Installing : libmount-2.37.4-1.amzn2023.0.4.aarch64 101/133 Installing : gzip-1.12-1.amzn2023.0.1.aarch64 102/133 Installing : cracklib-2.9.6-27.amzn2023.0.2.aarch64 103/133 Installing : pam-1.5.1-8.amzn2023.0.4.aarch64 104/133 Installing : libpwquality-1.4.4-6.amzn2023.0.2.aarch64 105/133 Installing : util-linux-core-2.37.4-1.amzn2023.0.4.aarch64 106/133 Running scriptlet: util-linux-core-2.37.4-1.amzn2023.0.4.aarch64 106/133 Installing : cyrus-sasl-lib-2.1.27-18.amzn2023.0.3.aarch64 107/133 Installing : openldap-2.4.57-6.amzn2023.0.6.aarch64 108/133 Installing : libssh-0.10.6-1.amzn2023.0.1.aarch64 109/133 Installing : libcurl-8.5.0-1.amzn2023.0.4.aarch64 110/133 Installing : elfutils-libs-0.188-3.amzn2023.0.2.aarch64 111/133 Installing : elfutils-debuginfod-client-0.188-3.amzn2023.0.2. 112/133 Installing : binutils-2.39-6.amzn2023.0.10.aarch64 113/133 Running scriptlet: binutils-2.39-6.amzn2023.0.10.aarch64 113/133 Installing : elfutils-0.188-3.amzn2023.0.2.aarch64 114/133 Installing : gdb-minimal-12.1-5.amzn2023.0.4.aarch64 115/133 Installing : debugedit-5.0-2.amzn2023.0.3.aarch64 116/133 Installing : curl-8.5.0-1.amzn2023.0.4.aarch64 117/133 Installing : libfdisk-2.37.4-1.amzn2023.0.4.aarch64 118/133 Installing : libarchive-3.7.4-2.amzn2023.0.2.aarch64 119/133 Installing : rpm-4.16.1.3-29.amzn2023.0.6.aarch64 120/133 Installing : rpm-libs-4.16.1.3-29.amzn2023.0.6.aarch64 121/133 Installing : rpm-build-libs-4.16.1.3-29.amzn2023.0.6.aarch64 122/133 Installing : efi-srpm-macros-5-4.amzn2023.0.5.noarch 123/133 Installing : lua-srpm-macros-1-4.amzn2023.0.2.noarch 124/133 Installing : fonts-srpm-macros-1:2.0.5-12.amzn2023.0.2.noarch 125/133 Installing : go-srpm-macros-3.2.0-37.amzn2023.noarch 126/133 Installing : python-srpm-macros-3.9-41.amzn2023.0.6.noarch 127/133 Installing : amazon-rpm-config-228-4.amzn2023.0.1.noarch 128/133 Running scriptlet: amazon-rpm-config-228-4.amzn2023.0.1.noarch 128/133 Installing : pkgconf-1.8.0-4.amzn2023.0.2.aarch64 129/133 Installing : pkgconf-pkg-config-1.8.0-4.amzn2023.0.2.aarch64 130/133 Installing : rpm-build-4.16.1.3-29.amzn2023.0.6.aarch64 131/133 Installing : util-linux-2.37.4-1.amzn2023.0.4.aarch64 132/133 Running scriptlet: util-linux-2.37.4-1.amzn2023.0.4.aarch64 132/133 Installing : which-2.21-26.amzn2023.0.2.aarch64 133/133 Running scriptlet: filesystem-3.14-5.amzn2023.0.3.aarch64 133/133 Running scriptlet: ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarc 133/133 Running scriptlet: pam-1.5.1-8.amzn2023.0.4.aarch64 133/133 Running scriptlet: rpm-4.16.1.3-29.amzn2023.0.6.aarch64 133/133 Running scriptlet: which-2.21-26.amzn2023.0.2.aarch64 133/133 Verifying : alternatives-1.15-2.amzn2023.0.2.aarch64 1/133 Verifying : amazon-linux-repo-cdn-2023.6.20250203-0.amzn2023 2/133 Verifying : amazon-rpm-config-228-4.amzn2023.0.1.noarch 3/133 Verifying : audit-libs-3.0.6-1.amzn2023.0.2.aarch64 4/133 Verifying : basesystem-11-11.amzn2023.0.2.noarch 5/133 Verifying : bash-5.2.15-1.amzn2023.0.2.aarch64 6/133 Verifying : binutils-2.39-6.amzn2023.0.10.aarch64 7/133 Verifying : bzip2-1.0.8-6.amzn2023.0.2.aarch64 8/133 Verifying : bzip2-libs-1.0.8-6.amzn2023.0.2.aarch64 9/133 Verifying : ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarc 10/133 Verifying : coreutils-8.32-30.amzn2023.0.3.aarch64 11/133 Verifying : coreutils-common-8.32-30.amzn2023.0.3.aarch64 12/133 Verifying : cpio-2.13-13.amzn2023.0.3.aarch64 13/133 Verifying : cracklib-2.9.6-27.amzn2023.0.2.aarch64 14/133 Verifying : crypto-policies-20240828-2.git626aa59.amzn2023.0 15/133 Verifying : curl-8.5.0-1.amzn2023.0.4.aarch64 16/133 Verifying : cyrus-sasl-lib-2.1.27-18.amzn2023.0.3.aarch64 17/133 Verifying : debugedit-5.0-2.amzn2023.0.3.aarch64 18/133 Verifying : diffutils-3.8-1.amzn2023.0.2.aarch64 19/133 Verifying : dwz-0.14-6.amzn2023.0.2.aarch64 20/133 Verifying : ed-1.14.2-10.amzn2023.0.2.aarch64 21/133 Verifying : efi-srpm-macros-5-4.amzn2023.0.5.noarch 22/133 Verifying : elfutils-0.188-3.amzn2023.0.2.aarch64 23/133 Verifying : elfutils-debuginfod-client-0.188-3.amzn2023.0.2. 24/133 Verifying : elfutils-default-yama-scope-0.188-3.amzn2023.0.2 25/133 Verifying : elfutils-libelf-0.188-3.amzn2023.0.2.aarch64 26/133 Verifying : elfutils-libs-0.188-3.amzn2023.0.2.aarch64 27/133 Verifying : file-5.39-7.amzn2023.0.4.aarch64 28/133 Verifying : file-libs-5.39-7.amzn2023.0.4.aarch64 29/133 Verifying : filesystem-3.14-5.amzn2023.0.3.aarch64 30/133 Verifying : findutils-1:4.8.0-2.amzn2023.0.2.aarch64 31/133 Verifying : fonts-srpm-macros-1:2.0.5-12.amzn2023.0.2.noarch 32/133 Verifying : gawk-5.1.0-3.amzn2023.0.3.aarch64 33/133 Verifying : gdb-minimal-12.1-5.amzn2023.0.4.aarch64 34/133 Verifying : gdbm-libs-1:1.19-2.amzn2023.0.2.aarch64 35/133 Verifying : ghc-srpm-macros-1.5.0-4.amzn2023.0.2.noarch 36/133 Verifying : glibc-2.34-117.amzn2023.0.1.aarch64 37/133 Verifying : glibc-common-2.34-117.amzn2023.0.1.aarch64 38/133 Verifying : glibc-gconv-extra-2.34-117.amzn2023.0.1.aarch64 39/133 Verifying : glibc-minimal-langpack-2.34-117.amzn2023.0.1.aar 40/133 Verifying : gmp-1:6.2.1-2.amzn2023.0.2.aarch64 41/133 Verifying : go-srpm-macros-3.2.0-37.amzn2023.noarch 42/133 Verifying : grep-3.8-1.amzn2023.0.4.aarch64 43/133 Verifying : gzip-1.12-1.amzn2023.0.1.aarch64 44/133 Verifying : info-6.7-10.amzn2023.0.2.aarch64 45/133 Verifying : jansson-2.14-0.amzn2023.aarch64 46/133 Verifying : kernel-srpm-macros-1.0-14.amzn2023.0.2.noarch 47/133 Verifying : keyutils-libs-1.6.3-1.amzn2023.0.1.aarch64 48/133 Verifying : krb5-libs-1.21.3-1.amzn2023.0.1.aarch64 49/133 Verifying : libacl-2.3.1-2.amzn2023.0.2.aarch64 50/133 Verifying : libarchive-3.7.4-2.amzn2023.0.2.aarch64 51/133 Verifying : libattr-2.5.1-3.amzn2023.0.2.aarch64 52/133 Verifying : libblkid-2.37.4-1.amzn2023.0.4.aarch64 53/133 Verifying : libbrotli-1.0.9-4.amzn2023.0.2.aarch64 54/133 Verifying : libcap-2.48-2.amzn2023.0.3.aarch64 55/133 Verifying : libcap-ng-0.8.2-4.amzn2023.0.2.aarch64 56/133 Verifying : libcom_err-1.46.5-2.amzn2023.0.2.aarch64 57/133 Verifying : libcurl-8.5.0-1.amzn2023.0.4.aarch64 58/133 Verifying : libdb-5.3.28-49.amzn2023.0.2.aarch64 59/133 Verifying : libeconf-0.4.0-1.amzn2023.0.3.aarch64 60/133 Verifying : libfdisk-2.37.4-1.amzn2023.0.4.aarch64 61/133 Verifying : libffi-3.4.4-1.amzn2023.0.1.aarch64 62/133 Verifying : libgcc-11.4.1-2.amzn2023.0.2.aarch64 63/133 Verifying : libgomp-11.4.1-2.amzn2023.0.2.aarch64 64/133 Verifying : libidn2-2.3.2-1.amzn2023.0.5.aarch64 65/133 Verifying : libmount-2.37.4-1.amzn2023.0.4.aarch64 66/133 Verifying : libnghttp2-1.59.0-3.amzn2023.0.1.aarch64 67/133 Verifying : libpkgconf-1.8.0-4.amzn2023.0.2.aarch64 68/133 Verifying : libpsl-0.21.1-3.amzn2023.0.2.aarch64 69/133 Verifying : libpwquality-1.4.4-6.amzn2023.0.2.aarch64 70/133 Verifying : libselinux-3.4-5.amzn2023.0.2.aarch64 71/133 Verifying : libsemanage-3.4-5.amzn2023.0.2.aarch64 72/133 Verifying : libsepol-3.4-3.amzn2023.0.3.aarch64 73/133 Verifying : libsigsegv-2.13-2.amzn2023.0.2.aarch64 74/133 Verifying : libsmartcols-2.37.4-1.amzn2023.0.4.aarch64 75/133 Verifying : libssh-0.10.6-1.amzn2023.0.1.aarch64 76/133 Verifying : libssh-config-0.10.6-1.amzn2023.0.1.noarch 77/133 Verifying : libstdc++-11.4.1-2.amzn2023.0.2.aarch64 78/133 Verifying : libtasn1-4.19.0-1.amzn2023.0.4.aarch64 79/133 Verifying : libunistring-0.9.10-10.amzn2023.0.2.aarch64 80/133 Verifying : libutempter-1.2.1-4.amzn2023.0.2.aarch64 81/133 Verifying : libuuid-2.37.4-1.amzn2023.0.4.aarch64 82/133 Verifying : libverto-0.3.2-1.amzn2023.0.2.aarch64 83/133 Verifying : libxcrypt-4.4.33-7.amzn2023.aarch64 84/133 Verifying : libxml2-2.10.4-1.amzn2023.0.7.aarch64 85/133 Verifying : libzstd-1.5.5-1.amzn2023.0.1.aarch64 86/133 Verifying : lua-libs-5.4.4-3.amzn2023.0.2.aarch64 87/133 Verifying : lua-srpm-macros-1-4.amzn2023.0.2.noarch 88/133 Verifying : lz4-libs-1.9.4-1.amzn2023.0.2.aarch64 89/133 Verifying : mpfr-4.1.0-7.amzn2023.0.2.aarch64 90/133 Verifying : ncurses-base-6.2-4.20200222.amzn2023.0.6.noarch 91/133 Verifying : ncurses-libs-6.2-4.20200222.amzn2023.0.6.aarch64 92/133 Verifying : ocaml-srpm-macros-6-6.amzn2023.0.2.noarch 93/133 Verifying : openblas-srpm-macros-2-9.amzn2023.0.2.noarch 94/133 Verifying : openldap-2.4.57-6.amzn2023.0.6.aarch64 95/133 Verifying : openssl-libs-1:3.0.8-1.amzn2023.0.18.aarch64 96/133 Verifying : p11-kit-0.24.1-2.amzn2023.0.3.aarch64 97/133 Verifying : p11-kit-trust-0.24.1-2.amzn2023.0.3.aarch64 98/133 Verifying : package-notes-srpm-macros-0.4-18.amzn2023.0.5.no 99/133 Verifying : pam-1.5.1-8.amzn2023.0.4.aarch64 100/133 Verifying : patch-2.7.6-14.amzn2023.0.2.aarch64 101/133 Verifying : pcre2-10.40-1.amzn2023.0.3.aarch64 102/133 Verifying : pcre2-syntax-10.40-1.amzn2023.0.3.noarch 103/133 Verifying : perl-srpm-macros-1-39.amzn2023.0.2.noarch 104/133 Verifying : pkgconf-1.8.0-4.amzn2023.0.2.aarch64 105/133 Verifying : pkgconf-m4-1.8.0-4.amzn2023.0.2.noarch 106/133 Verifying : pkgconf-pkg-config-1.8.0-4.amzn2023.0.2.aarch64 107/133 Verifying : popt-1.18-6.amzn2023.0.2.aarch64 108/133 Verifying : publicsuffix-list-dafsa-20240212-61.amzn2023.noa 109/133 Verifying : python-srpm-macros-3.9-41.amzn2023.0.6.noarch 110/133 Verifying : readline-8.1-2.amzn2023.0.2.aarch64 111/133 Verifying : rpm-4.16.1.3-29.amzn2023.0.6.aarch64 112/133 Verifying : rpm-build-4.16.1.3-29.amzn2023.0.6.aarch64 113/133 Verifying : rpm-build-libs-4.16.1.3-29.amzn2023.0.6.aarch64 114/133 Verifying : rpm-libs-4.16.1.3-29.amzn2023.0.6.aarch64 115/133 Verifying : rust-srpm-macros-21-42.amzn2023.0.2.noarch 116/133 Verifying : sed-4.8-7.amzn2023.0.2.aarch64 117/133 Verifying : setup-2.13.7-3.amzn2023.0.2.noarch 118/133 Verifying : shadow-utils-2:4.9-12.amzn2023.0.4.aarch64 119/133 Verifying : sqlite-libs-3.40.0-1.amzn2023.0.4.aarch64 120/133 Verifying : system-release-2023.6.20250203-0.amzn2023.noarch 121/133 Verifying : systemd-libs-252.23-2.amzn2023.aarch64 122/133 Verifying : tar-2:1.34-1.amzn2023.0.4.aarch64 123/133 Verifying : unzip-6.0-57.amzn2023.0.2.aarch64 124/133 Verifying : util-linux-2.37.4-1.amzn2023.0.4.aarch64 125/133 Verifying : util-linux-core-2.37.4-1.amzn2023.0.4.aarch64 126/133 Verifying : which-2.21-26.amzn2023.0.2.aarch64 127/133 Verifying : xxhash-libs-0.8.0-3.amzn2023.0.2.aarch64 128/133 Verifying : xz-5.2.5-9.amzn2023.0.2.aarch64 129/133 Verifying : xz-libs-5.2.5-9.amzn2023.0.2.aarch64 130/133 Verifying : zip-3.0-28.amzn2023.0.2.aarch64 131/133 Verifying : zlib-1.2.11-33.amzn2023.0.5.aarch64 132/133 Verifying : zstd-1.5.5-1.amzn2023.0.1.aarch64 133/133 Installed: alternatives-1.15-2.amzn2023.0.2.aarch64 amazon-linux-repo-cdn-2023.6.20250203-0.amzn2023.noarch amazon-rpm-config-228-4.amzn2023.0.1.noarch audit-libs-3.0.6-1.amzn2023.0.2.aarch64 basesystem-11-11.amzn2023.0.2.noarch bash-5.2.15-1.amzn2023.0.2.aarch64 binutils-2.39-6.amzn2023.0.10.aarch64 bzip2-1.0.8-6.amzn2023.0.2.aarch64 bzip2-libs-1.0.8-6.amzn2023.0.2.aarch64 ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarch coreutils-8.32-30.amzn2023.0.3.aarch64 coreutils-common-8.32-30.amzn2023.0.3.aarch64 cpio-2.13-13.amzn2023.0.3.aarch64 cracklib-2.9.6-27.amzn2023.0.2.aarch64 crypto-policies-20240828-2.git626aa59.amzn2023.0.1.noarch curl-8.5.0-1.amzn2023.0.4.aarch64 cyrus-sasl-lib-2.1.27-18.amzn2023.0.3.aarch64 debugedit-5.0-2.amzn2023.0.3.aarch64 diffutils-3.8-1.amzn2023.0.2.aarch64 dwz-0.14-6.amzn2023.0.2.aarch64 ed-1.14.2-10.amzn2023.0.2.aarch64 efi-srpm-macros-5-4.amzn2023.0.5.noarch elfutils-0.188-3.amzn2023.0.2.aarch64 elfutils-debuginfod-client-0.188-3.amzn2023.0.2.aarch64 elfutils-default-yama-scope-0.188-3.amzn2023.0.2.noarch elfutils-libelf-0.188-3.amzn2023.0.2.aarch64 elfutils-libs-0.188-3.amzn2023.0.2.aarch64 file-5.39-7.amzn2023.0.4.aarch64 file-libs-5.39-7.amzn2023.0.4.aarch64 filesystem-3.14-5.amzn2023.0.3.aarch64 findutils-1:4.8.0-2.amzn2023.0.2.aarch64 fonts-srpm-macros-1:2.0.5-12.amzn2023.0.2.noarch gawk-5.1.0-3.amzn2023.0.3.aarch64 gdb-minimal-12.1-5.amzn2023.0.4.aarch64 gdbm-libs-1:1.19-2.amzn2023.0.2.aarch64 ghc-srpm-macros-1.5.0-4.amzn2023.0.2.noarch glibc-2.34-117.amzn2023.0.1.aarch64 glibc-common-2.34-117.amzn2023.0.1.aarch64 glibc-gconv-extra-2.34-117.amzn2023.0.1.aarch64 glibc-minimal-langpack-2.34-117.amzn2023.0.1.aarch64 gmp-1:6.2.1-2.amzn2023.0.2.aarch64 go-srpm-macros-3.2.0-37.amzn2023.noarch grep-3.8-1.amzn2023.0.4.aarch64 gzip-1.12-1.amzn2023.0.1.aarch64 info-6.7-10.amzn2023.0.2.aarch64 jansson-2.14-0.amzn2023.aarch64 kernel-srpm-macros-1.0-14.amzn2023.0.2.noarch keyutils-libs-1.6.3-1.amzn2023.0.1.aarch64 krb5-libs-1.21.3-1.amzn2023.0.1.aarch64 libacl-2.3.1-2.amzn2023.0.2.aarch64 libarchive-3.7.4-2.amzn2023.0.2.aarch64 libattr-2.5.1-3.amzn2023.0.2.aarch64 libblkid-2.37.4-1.amzn2023.0.4.aarch64 libbrotli-1.0.9-4.amzn2023.0.2.aarch64 libcap-2.48-2.amzn2023.0.3.aarch64 libcap-ng-0.8.2-4.amzn2023.0.2.aarch64 libcom_err-1.46.5-2.amzn2023.0.2.aarch64 libcurl-8.5.0-1.amzn2023.0.4.aarch64 libdb-5.3.28-49.amzn2023.0.2.aarch64 libeconf-0.4.0-1.amzn2023.0.3.aarch64 libfdisk-2.37.4-1.amzn2023.0.4.aarch64 libffi-3.4.4-1.amzn2023.0.1.aarch64 libgcc-11.4.1-2.amzn2023.0.2.aarch64 libgomp-11.4.1-2.amzn2023.0.2.aarch64 libidn2-2.3.2-1.amzn2023.0.5.aarch64 libmount-2.37.4-1.amzn2023.0.4.aarch64 libnghttp2-1.59.0-3.amzn2023.0.1.aarch64 libpkgconf-1.8.0-4.amzn2023.0.2.aarch64 libpsl-0.21.1-3.amzn2023.0.2.aarch64 libpwquality-1.4.4-6.amzn2023.0.2.aarch64 libselinux-3.4-5.amzn2023.0.2.aarch64 libsemanage-3.4-5.amzn2023.0.2.aarch64 libsepol-3.4-3.amzn2023.0.3.aarch64 libsigsegv-2.13-2.amzn2023.0.2.aarch64 libsmartcols-2.37.4-1.amzn2023.0.4.aarch64 libssh-0.10.6-1.amzn2023.0.1.aarch64 libssh-config-0.10.6-1.amzn2023.0.1.noarch libstdc++-11.4.1-2.amzn2023.0.2.aarch64 libtasn1-4.19.0-1.amzn2023.0.4.aarch64 libunistring-0.9.10-10.amzn2023.0.2.aarch64 libutempter-1.2.1-4.amzn2023.0.2.aarch64 libuuid-2.37.4-1.amzn2023.0.4.aarch64 libverto-0.3.2-1.amzn2023.0.2.aarch64 libxcrypt-4.4.33-7.amzn2023.aarch64 libxml2-2.10.4-1.amzn2023.0.7.aarch64 libzstd-1.5.5-1.amzn2023.0.1.aarch64 lua-libs-5.4.4-3.amzn2023.0.2.aarch64 lua-srpm-macros-1-4.amzn2023.0.2.noarch lz4-libs-1.9.4-1.amzn2023.0.2.aarch64 mpfr-4.1.0-7.amzn2023.0.2.aarch64 ncurses-base-6.2-4.20200222.amzn2023.0.6.noarch ncurses-libs-6.2-4.20200222.amzn2023.0.6.aarch64 ocaml-srpm-macros-6-6.amzn2023.0.2.noarch openblas-srpm-macros-2-9.amzn2023.0.2.noarch openldap-2.4.57-6.amzn2023.0.6.aarch64 openssl-libs-1:3.0.8-1.amzn2023.0.18.aarch64 p11-kit-0.24.1-2.amzn2023.0.3.aarch64 p11-kit-trust-0.24.1-2.amzn2023.0.3.aarch64 package-notes-srpm-macros-0.4-18.amzn2023.0.5.noarch pam-1.5.1-8.amzn2023.0.4.aarch64 patch-2.7.6-14.amzn2023.0.2.aarch64 pcre2-10.40-1.amzn2023.0.3.aarch64 pcre2-syntax-10.40-1.amzn2023.0.3.noarch perl-srpm-macros-1-39.amzn2023.0.2.noarch pkgconf-1.8.0-4.amzn2023.0.2.aarch64 pkgconf-m4-1.8.0-4.amzn2023.0.2.noarch pkgconf-pkg-config-1.8.0-4.amzn2023.0.2.aarch64 popt-1.18-6.amzn2023.0.2.aarch64 publicsuffix-list-dafsa-20240212-61.amzn2023.noarch python-srpm-macros-3.9-41.amzn2023.0.6.noarch readline-8.1-2.amzn2023.0.2.aarch64 rpm-4.16.1.3-29.amzn2023.0.6.aarch64 rpm-build-4.16.1.3-29.amzn2023.0.6.aarch64 rpm-build-libs-4.16.1.3-29.amzn2023.0.6.aarch64 rpm-libs-4.16.1.3-29.amzn2023.0.6.aarch64 rust-srpm-macros-21-42.amzn2023.0.2.noarch sed-4.8-7.amzn2023.0.2.aarch64 setup-2.13.7-3.amzn2023.0.2.noarch shadow-utils-2:4.9-12.amzn2023.0.4.aarch64 sqlite-libs-3.40.0-1.amzn2023.0.4.aarch64 system-release-2023.6.20250203-0.amzn2023.noarch systemd-libs-252.23-2.amzn2023.aarch64 tar-2:1.34-1.amzn2023.0.4.aarch64 unzip-6.0-57.amzn2023.0.2.aarch64 util-linux-2.37.4-1.amzn2023.0.4.aarch64 util-linux-core-2.37.4-1.amzn2023.0.4.aarch64 which-2.21-26.amzn2023.0.2.aarch64 xxhash-libs-0.8.0-3.amzn2023.0.2.aarch64 xz-5.2.5-9.amzn2023.0.2.aarch64 xz-libs-5.2.5-9.amzn2023.0.2.aarch64 zip-3.0-28.amzn2023.0.2.aarch64 zlib-1.2.11-33.amzn2023.0.5.aarch64 zstd-1.5.5-1.amzn2023.0.1.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.15-2.amzn2023.0.2.aarch64 amazon-linux-repo-cdn-2023.6.20250203-0.amzn2023.noarch amazon-rpm-config-228-4.amzn2023.0.1.noarch audit-libs-3.0.6-1.amzn2023.0.2.aarch64 basesystem-11-11.amzn2023.0.2.noarch bash-5.2.15-1.amzn2023.0.2.aarch64 binutils-2.39-6.amzn2023.0.10.aarch64 bzip2-1.0.8-6.amzn2023.0.2.aarch64 bzip2-libs-1.0.8-6.amzn2023.0.2.aarch64 ca-certificates-2023.2.68-1.0.amzn2023.0.1.noarch coreutils-8.32-30.amzn2023.0.3.aarch64 coreutils-common-8.32-30.amzn2023.0.3.aarch64 cpio-2.13-13.amzn2023.0.3.aarch64 cracklib-2.9.6-27.amzn2023.0.2.aarch64 crypto-policies-20240828-2.git626aa59.amzn2023.0.1.noarch curl-8.5.0-1.amzn2023.0.4.aarch64 cyrus-sasl-lib-2.1.27-18.amzn2023.0.3.aarch64 debugedit-5.0-2.amzn2023.0.3.aarch64 diffutils-3.8-1.amzn2023.0.2.aarch64 dwz-0.14-6.amzn2023.0.2.aarch64 ed-1.14.2-10.amzn2023.0.2.aarch64 efi-srpm-macros-5-4.amzn2023.0.5.noarch elfutils-0.188-3.amzn2023.0.2.aarch64 elfutils-debuginfod-client-0.188-3.amzn2023.0.2.aarch64 elfutils-default-yama-scope-0.188-3.amzn2023.0.2.noarch elfutils-libelf-0.188-3.amzn2023.0.2.aarch64 elfutils-libs-0.188-3.amzn2023.0.2.aarch64 file-5.39-7.amzn2023.0.4.aarch64 file-libs-5.39-7.amzn2023.0.4.aarch64 filesystem-3.14-5.amzn2023.0.3.aarch64 findutils-4.8.0-2.amzn2023.0.2.aarch64 fonts-srpm-macros-2.0.5-12.amzn2023.0.2.noarch gawk-5.1.0-3.amzn2023.0.3.aarch64 gdb-minimal-12.1-5.amzn2023.0.4.aarch64 gdbm-libs-1.19-2.amzn2023.0.2.aarch64 ghc-srpm-macros-1.5.0-4.amzn2023.0.2.noarch glibc-2.34-117.amzn2023.0.1.aarch64 glibc-common-2.34-117.amzn2023.0.1.aarch64 glibc-gconv-extra-2.34-117.amzn2023.0.1.aarch64 glibc-minimal-langpack-2.34-117.amzn2023.0.1.aarch64 gmp-6.2.1-2.amzn2023.0.2.aarch64 go-srpm-macros-3.2.0-37.amzn2023.noarch gpg-pubkey-d832c631-6515c85e grep-3.8-1.amzn2023.0.4.aarch64 gzip-1.12-1.amzn2023.0.1.aarch64 info-6.7-10.amzn2023.0.2.aarch64 jansson-2.14-0.amzn2023.aarch64 kernel-srpm-macros-1.0-14.amzn2023.0.2.noarch keyutils-libs-1.6.3-1.amzn2023.0.1.aarch64 krb5-libs-1.21.3-1.amzn2023.0.1.aarch64 libacl-2.3.1-2.amzn2023.0.2.aarch64 libarchive-3.7.4-2.amzn2023.0.2.aarch64 libattr-2.5.1-3.amzn2023.0.2.aarch64 libblkid-2.37.4-1.amzn2023.0.4.aarch64 libbrotli-1.0.9-4.amzn2023.0.2.aarch64 libcap-2.48-2.amzn2023.0.3.aarch64 libcap-ng-0.8.2-4.amzn2023.0.2.aarch64 libcom_err-1.46.5-2.amzn2023.0.2.aarch64 libcurl-8.5.0-1.amzn2023.0.4.aarch64 libdb-5.3.28-49.amzn2023.0.2.aarch64 libeconf-0.4.0-1.amzn2023.0.3.aarch64 libfdisk-2.37.4-1.amzn2023.0.4.aarch64 libffi-3.4.4-1.amzn2023.0.1.aarch64 libgcc-11.4.1-2.amzn2023.0.2.aarch64 libgomp-11.4.1-2.amzn2023.0.2.aarch64 libidn2-2.3.2-1.amzn2023.0.5.aarch64 libmount-2.37.4-1.amzn2023.0.4.aarch64 libnghttp2-1.59.0-3.amzn2023.0.1.aarch64 libpkgconf-1.8.0-4.amzn2023.0.2.aarch64 libpsl-0.21.1-3.amzn2023.0.2.aarch64 libpwquality-1.4.4-6.amzn2023.0.2.aarch64 libselinux-3.4-5.amzn2023.0.2.aarch64 libsemanage-3.4-5.amzn2023.0.2.aarch64 libsepol-3.4-3.amzn2023.0.3.aarch64 libsigsegv-2.13-2.amzn2023.0.2.aarch64 libsmartcols-2.37.4-1.amzn2023.0.4.aarch64 libssh-0.10.6-1.amzn2023.0.1.aarch64 libssh-config-0.10.6-1.amzn2023.0.1.noarch libstdc++-11.4.1-2.amzn2023.0.2.aarch64 libtasn1-4.19.0-1.amzn2023.0.4.aarch64 libunistring-0.9.10-10.amzn2023.0.2.aarch64 libutempter-1.2.1-4.amzn2023.0.2.aarch64 libuuid-2.37.4-1.amzn2023.0.4.aarch64 libverto-0.3.2-1.amzn2023.0.2.aarch64 libxcrypt-4.4.33-7.amzn2023.aarch64 libxml2-2.10.4-1.amzn2023.0.7.aarch64 libzstd-1.5.5-1.amzn2023.0.1.aarch64 lua-libs-5.4.4-3.amzn2023.0.2.aarch64 lua-srpm-macros-1-4.amzn2023.0.2.noarch lz4-libs-1.9.4-1.amzn2023.0.2.aarch64 mpfr-4.1.0-7.amzn2023.0.2.aarch64 ncurses-base-6.2-4.20200222.amzn2023.0.6.noarch ncurses-libs-6.2-4.20200222.amzn2023.0.6.aarch64 ocaml-srpm-macros-6-6.amzn2023.0.2.noarch openblas-srpm-macros-2-9.amzn2023.0.2.noarch openldap-2.4.57-6.amzn2023.0.6.aarch64 openssl-libs-3.0.8-1.amzn2023.0.18.aarch64 p11-kit-0.24.1-2.amzn2023.0.3.aarch64 p11-kit-trust-0.24.1-2.amzn2023.0.3.aarch64 package-notes-srpm-macros-0.4-18.amzn2023.0.5.noarch pam-1.5.1-8.amzn2023.0.4.aarch64 patch-2.7.6-14.amzn2023.0.2.aarch64 pcre2-10.40-1.amzn2023.0.3.aarch64 pcre2-syntax-10.40-1.amzn2023.0.3.noarch perl-srpm-macros-1-39.amzn2023.0.2.noarch pkgconf-1.8.0-4.amzn2023.0.2.aarch64 pkgconf-m4-1.8.0-4.amzn2023.0.2.noarch pkgconf-pkg-config-1.8.0-4.amzn2023.0.2.aarch64 popt-1.18-6.amzn2023.0.2.aarch64 publicsuffix-list-dafsa-20240212-61.amzn2023.noarch python-srpm-macros-3.9-41.amzn2023.0.6.noarch readline-8.1-2.amzn2023.0.2.aarch64 rpm-4.16.1.3-29.amzn2023.0.6.aarch64 rpm-build-4.16.1.3-29.amzn2023.0.6.aarch64 rpm-build-libs-4.16.1.3-29.amzn2023.0.6.aarch64 rpm-libs-4.16.1.3-29.amzn2023.0.6.aarch64 rust-srpm-macros-21-42.amzn2023.0.2.noarch sed-4.8-7.amzn2023.0.2.aarch64 setup-2.13.7-3.amzn2023.0.2.noarch shadow-utils-4.9-12.amzn2023.0.4.aarch64 sqlite-libs-3.40.0-1.amzn2023.0.4.aarch64 system-release-2023.6.20250203-0.amzn2023.noarch systemd-libs-252.23-2.amzn2023.aarch64 tar-1.34-1.amzn2023.0.4.aarch64 unzip-6.0-57.amzn2023.0.2.aarch64 util-linux-2.37.4-1.amzn2023.0.4.aarch64 util-linux-core-2.37.4-1.amzn2023.0.4.aarch64 which-2.21-26.amzn2023.0.2.aarch64 xxhash-libs-0.8.0-3.amzn2023.0.2.aarch64 xz-5.2.5-9.amzn2023.0.2.aarch64 xz-libs-5.2.5-9.amzn2023.0.2.aarch64 zip-3.0-28.amzn2023.0.2.aarch64 zlib-1.2.11-33.amzn2023.0.5.aarch64 zstd-1.5.5-1.amzn2023.0.1.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1642550400 Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-16.amzn2023.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root/var/log/dnf.log /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root/var/log/dnf.librepo.log /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-jesndetp/autodocksuite/autodocksuite.spec) Config(child) 0 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-16.amzn2023.src.rpm) Config(amazonlinux-2023-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/amazonlinux-2023-aarch64-bootstrap-1738861576.944076/root. INFO: reusing tmpfs at /var/lib/mock/amazonlinux-2023-aarch64-bootstrap-1738861576.944076/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-29.amzn2023.0.6.aarch64 python3-dnf-4.14.0-1.amzn2023.0.5.noarch python3-dnf-plugins-core-4.3.0-13.amzn2023.0.5.noarch yum-4.14.0-1.amzn2023.0.5.noarch Finish: chroot init Start: build phase for autodocksuite-4.2.6-16.amzn2023.src.rpm Start: build setup for autodocksuite-4.2.6-16.amzn2023.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1642550400 Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-16.amzn2023.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 73 kB/s | 1.5 kB 00:00 Copr repository 11 MB/s | 492 kB 00:00 Amazon Linux 2023 repository - aarch64 12 kB/s | 3.6 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: gcc-c++ aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 12 M make aarch64 1:4.3-5.amzn2023.0.2 amazonlinux 530 k tcsh aarch64 6.24.14-1.amzn2023 amazonlinux 463 k Installing dependencies: annobin-docs noarch 10.93-1.amzn2023.0.1 amazonlinux 92 k annobin-plugin-gcc aarch64 10.93-1.amzn2023.0.1 amazonlinux 886 k cpp aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 9.8 M gc aarch64 8.0.4-5.amzn2023.0.2 amazonlinux 102 k gcc aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 30 M glibc-devel aarch64 2.34-117.amzn2023.0.1 amazonlinux 444 k guile22 aarch64 2.2.7-2.amzn2023.0.3 amazonlinux 6.4 M kernel-headers aarch64 6.1.127-135.201.amzn2023 amazonlinux 1.4 M libasan aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 401 k libatomic aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 35 k libmpc aarch64 1.2.1-2.amzn2023.0.2 amazonlinux 63 k libstdc++-devel aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 2.2 M libtool-ltdl aarch64 2.4.7-1.amzn2023.0.3 amazonlinux 38 k libubsan aarch64 11.4.1-2.amzn2023.0.2 amazonlinux 183 k libxcrypt-devel aarch64 4.4.33-7.amzn2023 amazonlinux 32 k Transaction Summary ================================================================================ Install 18 Packages Total download size: 64 M Installed size: 204 M Downloading Packages: (1/18): annobin-docs-10.93-1.amzn2023.0.1.noarc 3.7 MB/s | 92 kB 00:00 (2/18): annobin-plugin-gcc-10.93-1.amzn2023.0.1 29 MB/s | 886 kB 00:00 (3/18): gc-8.0.4-5.amzn2023.0.2.aarch64.rpm 11 MB/s | 102 kB 00:00 (4/18): cpp-11.4.1-2.amzn2023.0.2.aarch64.rpm 143 MB/s | 9.8 MB 00:00 (5/18): glibc-devel-2.34-117.amzn2023.0.1.aarch 40 MB/s | 444 kB 00:00 (6/18): gcc-c++-11.4.1-2.amzn2023.0.2.aarch64.r 115 MB/s | 12 MB 00:00 (7/18): guile22-2.2.7-2.amzn2023.0.3.aarch64.rp 94 MB/s | 6.4 MB 00:00 (8/18): kernel-headers-6.1.127-135.201.amzn2023 97 MB/s | 1.4 MB 00:00 (9/18): libasan-11.4.1-2.amzn2023.0.2.aarch64.r 54 MB/s | 401 kB 00:00 (10/18): libatomic-11.4.1-2.amzn2023.0.2.aarch6 3.7 MB/s | 35 kB 00:00 (11/18): libmpc-1.2.1-2.amzn2023.0.2.aarch64.rp 7.0 MB/s | 63 kB 00:00 (12/18): libtool-ltdl-2.4.7-1.amzn2023.0.3.aarc 3.0 MB/s | 38 kB 00:00 (13/18): libstdc++-devel-11.4.1-2.amzn2023.0.2. 94 MB/s | 2.2 MB 00:00 (14/18): libubsan-11.4.1-2.amzn2023.0.2.aarch64 19 MB/s | 183 kB 00:00 (15/18): libxcrypt-devel-4.4.33-7.amzn2023.aarc 4.4 MB/s | 32 kB 00:00 (16/18): make-4.3-5.amzn2023.0.2.aarch64.rpm 61 MB/s | 530 kB 00:00 (17/18): gcc-11.4.1-2.amzn2023.0.2.aarch64.rpm 147 MB/s | 30 MB 00:00 (18/18): tcsh-6.24.14-1.amzn2023.aarch64.rpm 1.6 MB/s | 463 kB 00:00 -------------------------------------------------------------------------------- Total 82 MB/s | 64 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.2.1-2.amzn2023.0.2.aarch64 1/18 Installing : cpp-11.4.1-2.amzn2023.0.2.aarch64 2/18 Installing : libubsan-11.4.1-2.amzn2023.0.2.aarch64 3/18 Installing : libtool-ltdl-2.4.7-1.amzn2023.0.3.aarch64 4/18 Installing : libstdc++-devel-11.4.1-2.amzn2023.0.2.aarch64 5/18 Installing : libatomic-11.4.1-2.amzn2023.0.2.aarch64 6/18 Installing : libasan-11.4.1-2.amzn2023.0.2.aarch64 7/18 Installing : kernel-headers-6.1.127-135.201.amzn2023.aarch64 8/18 Installing : libxcrypt-devel-4.4.33-7.amzn2023.aarch64 9/18 Installing : glibc-devel-2.34-117.amzn2023.0.1.aarch64 10/18 Installing : gc-8.0.4-5.amzn2023.0.2.aarch64 11/18 Installing : guile22-2.2.7-2.amzn2023.0.3.aarch64 12/18 Installing : make-1:4.3-5.amzn2023.0.2.aarch64 13/18 Installing : gcc-11.4.1-2.amzn2023.0.2.aarch64 14/18 Running scriptlet: gcc-11.4.1-2.amzn2023.0.2.aarch64 14/18 Installing : annobin-docs-10.93-1.amzn2023.0.1.noarch 15/18 Installing : annobin-plugin-gcc-10.93-1.amzn2023.0.1.aarch64 16/18 Running scriptlet: annobin-plugin-gcc-10.93-1.amzn2023.0.1.aarch64 16/18 Installing : gcc-c++-11.4.1-2.amzn2023.0.2.aarch64 17/18 Installing : tcsh-6.24.14-1.amzn2023.aarch64 18/18 Running scriptlet: tcsh-6.24.14-1.amzn2023.aarch64 18/18 Verifying : annobin-docs-10.93-1.amzn2023.0.1.noarch 1/18 Verifying : annobin-plugin-gcc-10.93-1.amzn2023.0.1.aarch64 2/18 Verifying : cpp-11.4.1-2.amzn2023.0.2.aarch64 3/18 Verifying : gc-8.0.4-5.amzn2023.0.2.aarch64 4/18 Verifying : gcc-11.4.1-2.amzn2023.0.2.aarch64 5/18 Verifying : gcc-c++-11.4.1-2.amzn2023.0.2.aarch64 6/18 Verifying : glibc-devel-2.34-117.amzn2023.0.1.aarch64 7/18 Verifying : guile22-2.2.7-2.amzn2023.0.3.aarch64 8/18 Verifying : kernel-headers-6.1.127-135.201.amzn2023.aarch64 9/18 Verifying : libasan-11.4.1-2.amzn2023.0.2.aarch64 10/18 Verifying : libatomic-11.4.1-2.amzn2023.0.2.aarch64 11/18 Verifying : libmpc-1.2.1-2.amzn2023.0.2.aarch64 12/18 Verifying : libstdc++-devel-11.4.1-2.amzn2023.0.2.aarch64 13/18 Verifying : libtool-ltdl-2.4.7-1.amzn2023.0.3.aarch64 14/18 Verifying : libubsan-11.4.1-2.amzn2023.0.2.aarch64 15/18 Verifying : libxcrypt-devel-4.4.33-7.amzn2023.aarch64 16/18 Verifying : make-1:4.3-5.amzn2023.0.2.aarch64 17/18 Verifying : tcsh-6.24.14-1.amzn2023.aarch64 18/18 Installed: annobin-docs-10.93-1.amzn2023.0.1.noarch annobin-plugin-gcc-10.93-1.amzn2023.0.1.aarch64 cpp-11.4.1-2.amzn2023.0.2.aarch64 gc-8.0.4-5.amzn2023.0.2.aarch64 gcc-11.4.1-2.amzn2023.0.2.aarch64 gcc-c++-11.4.1-2.amzn2023.0.2.aarch64 glibc-devel-2.34-117.amzn2023.0.1.aarch64 guile22-2.2.7-2.amzn2023.0.3.aarch64 kernel-headers-6.1.127-135.201.amzn2023.aarch64 libasan-11.4.1-2.amzn2023.0.2.aarch64 libatomic-11.4.1-2.amzn2023.0.2.aarch64 libmpc-1.2.1-2.amzn2023.0.2.aarch64 libstdc++-devel-11.4.1-2.amzn2023.0.2.aarch64 libtool-ltdl-2.4.7-1.amzn2023.0.3.aarch64 libubsan-11.4.1-2.amzn2023.0.2.aarch64 libxcrypt-devel-4.4.33-7.amzn2023.aarch64 make-1:4.3-5.amzn2023.0.2.aarch64 tcsh-6.24.14-1.amzn2023.aarch64 Complete! Finish: build setup for autodocksuite-4.2.6-16.amzn2023.src.rpm Start: rpmbuild autodocksuite-4.2.6-16.amzn2023.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1642550400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.LBqTLe + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf src + /usr/bin/gzip -dc /builddir/build/SOURCES/autodocksuite-4.2.6-src.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd src + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.4hZfJi + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/src/.package_note-autodocksuite-4.2.6-16.amzn2023.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh autodocksuite 4.2.6-16.amzn2023 aarch64 + cd src + pushd autodock ~/build/BUILD/src/autodock ~/build/BUILD/src + CFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/src/.package_note-autodocksuite-4.2.6-16.amzn2023.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2014-07-19 01:58:48.000000000 +0000 +++ ./configure 2025-02-06 17:06:57.589306493 +0000 @@ -1874,7 +1874,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + ./configure --build=aarch64-amazon-linux-gnu --host=aarch64-amazon-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gawk... (cached) gawk checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for aarch64-amazon-linux-gnu-ranlib... no checking for ranlib... ranlib checking build system type... aarch64-amazon-linux-gnu checking host system type... aarch64-amazon-linux-gnu checking for aarch64-amazon-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for getpid... yes checking for GetProcessId... no checking for fchmod... yes checking for setlinebuf... yes checking for sysconf... yes checking for times... yes checking for getrusage... yes checking for pow... no checking for sqrt... no checking for strncasecmp... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands + make -j4 rm -f default_parameters.h csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h make all-am make[1]: Entering directory '/builddir/build/BUILD/src/autodock' g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc main.cc:3490: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 3490 | #pragma omp parallel for \ | In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from analysis.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ analysis.cc: In function 'void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)': analysis.cc:138:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 138 | register int i = 0; | ^ analysis.cc:139:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 139 | register int j = 0; | ^ analysis.cc:140:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 140 | register int k = 0; | ^ analysis.cc:141:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 141 | register int t = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from hybrids.h:40, from main.cc:98: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from hybrids.h:40, from main.cc:98: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ main.cc: In function 'int main(int, const char**)': main.cc:480:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 480 | register int i = 0; | ^ main.cc:481:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 481 | register int j = 0; | ^ main.cc:482:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 482 | register int k = 0; | ^ main.cc:484:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 484 | register int xyz = 0; | ^~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc bestpdb.cc: In function 'void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)': bestpdb.cc:58:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 58 | register int i=0, | ^ bestpdb.cc:59:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 59 | j=0, | ^ bestpdb.cc:60:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 60 | k=0, | ^ bestpdb.cc:61:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 61 | confnum=0; | ^~~~~~~ bestpdb.cc:123:62: warning: '%4d' directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=] 123 | sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11], | ^~~ bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647] 123 | sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11], | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:900, from bestpdb.cc:33: /usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output between 20 and 26 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from call_glss.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from call_glss.cc:40: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ call_glss.cc: In function 'State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)': call_glss.cc:259:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 259 | register unsigned int i; | ^ call_glss.cc:260:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 260 | register int j; | ^ In file included from eval.h:38, from support.h:237, from ls.h:40, from call_ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from ls.h:40, from call_ls.cc:40: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ call_ls.cc: In function 'Representation** cnv_state_to_rep(const State&)': call_ls.cc:50:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 50 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc In file included from changeState.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ changeState.cc: In function 'State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)': changeState.cc:46:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc cluster_analysis.cc: In function 'int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)': cluster_analysis.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 61 | register int compare = 0, | ^~~~~~~ cluster_analysis.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 62 | i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from cnv_state_to_coords.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from clmode.h:40, from clmode.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ clmode.cc: In function 'void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)': clmode.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 62 | register int xyz = 0; | ^~~ clmode.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int i = 0; | ^ clmode.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int j = 0; | ^ main.cc:1250:89: warning: '%s' directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=] 1250 | prStr( error_message,"%s: Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library ); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6608, from /usr/include/c++/11/string:55, from main.cc:71: /usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 61 or more bytes (assuming 4156) into a destination of size 356 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ main.cc:2367:82: warning: '%s' directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=] 2367 | prStr( error_message,"%s: ERROR: Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]); | ^~ In file included from /usr/include/stdio.h:900, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6608, from /usr/include/c++/11/string:55, from main.cc:71: /usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 94 or more bytes (assuming 605) into a destination of size 356 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ com.cc:238: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 238 | #pragma omp critical | g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc In file included from /usr/include/string.h:519, from clmode.cc:33: In function 'strncpy', inlined from 'clmode(int, double const&, char const*, long const&, tms const&, int, char const*, double const (*) [3], double const*, int, int, char const*, int, int, int, _IO_FILE*)' at clmode.cc:210:28: /usr/include/bits/string_fortified.h:95:34: warning: 'strncpy' output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc In file included from eval.h:38, from support.h:237, from conformation_sampler.h:29, from conformation_sampler.cc:27: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from conformation_sampler.h:29, from conformation_sampler.cc:27: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ conformation_sampler.cc: In constructor 'ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)': conformation_sampler.cc:99:10: warning: variable 'base_q' set but not used [-Wunused-but-set-variable] 99 | Quat base_q = probe_point.readQuat(); | ^~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from dimLibrary.cc:6: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from pso.h:4, from dimLibrary.cc:6: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ dimLibrary.cc: In function 'void copyDimension(State*, const Position&)': dimLibrary.cc:17:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 17 | register int i, j; | ^ dimLibrary.cc:17:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 17 | register int i, j; | ^ dimLibrary.cc: In function 'void copyState2Dimension(Position*, const State&)': dimLibrary.cc:34:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 34 | register int i, j; | ^ dimLibrary.cc:34:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 34 | register int i, j; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc In file included from stateLibrary.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ stateLibrary.cc: In function 'void initialiseState(State*)': stateLibrary.cc:40:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 40 | register int i; | ^ stateLibrary.cc: In function 'void copyState(State*, const State&)': stateLibrary.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 61 | register int i; | ^ stateLibrary.cc: In function 'void printState(FILE*, State, int)': stateLibrary.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int i; | ^ stateLibrary.cc: In function 'int checkState(FILE*, const State*)': stateLibrary.cc:199:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 199 | register int i; | ^ stateLibrary.cc: In function 'Molecule copyStateToMolecule(const State*, Molecule*)': stateLibrary.cc:251:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 251 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc readfield.cc: In function 'void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)': readfield.cc:49:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 49 | register int i = 0; | ^ readfield.cc:83:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 83 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:108:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 108 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:116:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 116 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:123:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 123 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc readmap.cc: In function 'Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)': readmap.cc:82:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 82 | register int xyz = 0; | ^~~ readmap.cc:83:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 83 | register int i = 0; | ^ readmap.cc:84:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 84 | register int j = 0; | ^ readmap.cc:85:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 85 | register int k = 0; | ^ readPDBQT.cc: In function 'Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)': readPDBQT.cc:138:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 138 | register int i = 0; | ^ readPDBQT.cc:139:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 139 | register int j = 0; | ^ readPDBQT.cc:133:25: warning: variable 'B_has_conect_records' set but not used [-Wunused-but-set-variable] 133 | Boole B_has_conect_records = FALSE; | ^~~~~~~~~~~~~~~~~~~~ read_parameter_library.cc: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)': read_parameter_library.cc:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 207 | register int counter = 0; | ^~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc readPDBQT.cc:370:308: warning: ' could not be found; check ...' directive writing 238 bytes into a region of size between 196 and 212 [-Wformat-overflow=] 370 | prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:900, from readPDBQT.cc:33: /usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 283 or more bytes (assuming 299) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc In file included from eval.h:38, from eval.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from eval.cc:39: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ eval.cc: In function 'void make_state_from_rep(const Representation* const*, State*, int, FILE*)': eval.cc:72:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register int i; | ^ eval.cc: In member function 'double Eval::eval(int)': eval.cc:135:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 135 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc getrms.cc: In function 'Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)': getrms.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^ getrms.cc:48:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^ getrms.cc:48:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^~~ get_atom_type.cc: In function 'int get_atom_type(const char*)': get_atom_type.cc:53:9: warning: variable 'bond_index' set but not used [-Wunused-but-set-variable] 53 | int bond_index = -1; | ^~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc In file included from getInitialState.h:31, from getInitialState.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ getInitialState.cc: In function 'void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)': getInitialState.cc:111:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 111 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from gs.cc:42: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from gs.cc:42: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ gs.cc: In function 'double worst_in_window(const double*, int, int, FILE*)': gs.cc:73:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 73 | register int i; | ^ gs.cc: In function 'double avg_in_window(const double*, int, FILE*)': gs.cc:107:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 107 | register int i; | ^ gs.cc: In member function 'double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)': gs.cc:130:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 130 | register unsigned int i; | ^ gs.cc: In member function 'void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)': gs.cc:287:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 287 | register int i, j; | ^ gs.cc:287:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 287 | register int i, j; | ^ gs.cc: In member function 'void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)': gs.cc:396:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register unsigned int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc gs.cc: In member function 'void Genetic_Algorithm::crossover(Population&, int, FILE*)': gs.cc:596:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 596 | register unsigned int i; | ^ In file included from constants.h:28, from structs.h:30, from rep.h:45, from support.h:236, from gs.h:36, from gs.cc:42: autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:641:10: note: in expansion of macro 'assertQuatOK' 641 | assertQuatOK( q_father ); | ^~~~~~~~~~~~ autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:652:10: note: in expansion of macro 'assertQuatOK' 652 | assertQuatOK( q_mother ); | ^~~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)': gs.cc:877:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 877 | register unsigned int i; | ^ gs.cc: In member function 'void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)': gs.cc:983:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^ gs.cc:983:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)': gs.cc:1262:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1262:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)': gs.cc:1327:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1327:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)': gs.cc:1420:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1420 | register unsigned int i; | ^ In file included from initautodock.h:31, from initautodock.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ initautodock.cc: In function 'void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)': initautodock.cc:76:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 76 | register int xyz = 0; | ^~~ initautodock.cc:77:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i = 0; | ^ In file included from input_state.h:30, from input_state.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ input_state.cc: In function 'int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)': input_state.cc:70:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 70 | (void) fgets(myline, LINELEN, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from investigate.h:33, from investigate.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ investigate.cc: In function 'void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)': investigate.cc:103:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int Test = -1; | ^~~~ investigate.cc:106:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 106 | register int i = 0; | ^ investigate.cc:120:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 120 | register int NumOutside = 0; | ^~~~~~~~~~ investigate.cc:121:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 121 | register int LocalTest = 0; | ^~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc In file included from eval.h:38, from support.h:237, from ls.h:40, from ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from ls.h:40, from ls.cc:40: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ ls.cc: In function 'Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)': ls.cc:46:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^ ls.cc:46:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^~~~~ ls.cc: In member function 'virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:88:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~~ ls.cc:88:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~ ls.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register Real temp_rho = rho; | ^~~~~~~~ ls.cc:92:9: warning: unused variable 'thisQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:19: warning: unused variable 'prevQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:29: warning: unused variable 'startQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~~ ls.cc: In member function 'virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:248:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~ ls.cc:248:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~ ls.cc:248:70: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from eval.h:38, from support.h:237, from mapping.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from mapping.cc:37: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ In file included from eval.h:38, from support.h:237, from minmeanmax.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from minmeanmax.cc:39: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ minmeanmax.cc: In function 'void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)': minmeanmax.cc:51:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable] 56 | double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ]; | ^~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc In file included from mkNewState.h:31, from mkNewState.cc:33: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkNewState.cc: In function 'void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)': mkNewState.cc:56:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 56 | register int i; | ^ mkTorTree.cc: In function 'void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)': mkTorTree.cc:88:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register int i = 0; | ^ mkTorTree.cc:89:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int j = 0; | ^ mkTorTree.cc:90:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int k = 0; | ^ mkTorTree.cc: At global scope: mkTorTree.cc:456:5: warning: 'int check_atomnumber(int, const int*, int, int, FILE*)' defined but not used [-Wunused-function] 456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord, | ^~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc mkRandomState.cc: In function 'State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)': mkRandomState.cc:44:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 44 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc In file included from nonbonds.cc:35: mdist.h: In function 'void mdist()': mdist.h:45:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:45:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:32:25: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ nonbonds.cc: In function 'void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)': nonbonds.cc:250:13: warning: '?:' using integer constants in boolean context [-Wint-in-bool-context] 248 | for (int j=0; j< | ~~ 249 | B_print_all_bonds | ~~~~~~~~~~~~~~~~~ 250 | ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | : nbonds[i]; // loop over this atom's "j" bonds | ~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from writePDBQT.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc prClusterHist.cc: In function 'void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)': prClusterHist.cc:51:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int Rank=0, | ^~~~ prClusterHist.cc:52:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | j=0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from prInitialState.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ prInitialState.cc: In function 'void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)': prInitialState.cc:59:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 59 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc prTorConList.cc: In function 'void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)': prTorConList.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 64 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc In file included from qmultiply.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc:42:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 42 | register const Quat *const ql, //left | ^~ qmultiply.cc:43:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 43 | register const Quat *const qr ) //right | ^~ qmultiply.cc: In function 'void qmultiply(Quat*, const Quat*, const Quat*)': qmultiply.cc:66:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc: In function 'AxisAngle QuatToAxisAngle(const Quat&)': qmultiply.cc:224:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 224 | register double angle = 2. * acos( input.w ); | ^~~~~ qmultiply.cc: In function 'Quat inverse(const Quat&)': qmultiply.cc:356:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~~ qmultiply.cc:356:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~ qmultiply.cc:357:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 357 | register double inv_squared_magnitude; | ^~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc In file included from qtransform.h:35, from qtransform.cc:32: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qtransform.cc: In function 'void qtransform(const Coord&, const Quat&, Real (*)[3], int)': qtransform.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 65 | register int a; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -O3 -Wall -Wno-write-strings -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc rep.cc: In constructor 'IntVector::IntVector(int)': rep.cc:77:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i; | ^ rep.cc: In constructor 'IntVector::IntVector(int, int, int)': rep.cc:95:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i; | ^ rep.cc: In copy constructor 'IntVector::IntVector(const IntVector&)': rep.cc:129:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 129 | for (register unsigned int i=0; i 0.458) j = IMIN(l,m); | ~~^~~~~~~~~~~ ranlib.cc:1116:8: warning: 'omega' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ranlib.cc:1116:24: warning: 'c3' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~~~~^~~~ ranlib.cc:1116:24: warning: 'c2' may be used uninitialized in this function [-Wmaybe-uninitialized] ranlib.cc:1116:31: warning: 'c1' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~~~~~~~~~~~~^~~~ ranlib.cc:1116:38: warning: 'c0' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~~~~~~~~~~~~~~~~~~~~^~~~ ranlib.cc:1085:9: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] 1085 | if(c*fabs(u) > py*exp(px+e)-fy*exp(fx+e)) goto S50; | ~^~~~~~~~ ranlib.cc:1061:10: warning: 'u' may be used uninitialized in this function [-Wmaybe-uninitialized] 1061 | if(fy-u*fy <= py*exp(px-fx)) return ignpoi; | ~~^~~~~ ranlib.cc:1106:23: warning: 'fk' may be used uninitialized in this function [-Wmaybe-uninitialized] 1106 | px = fk*log(1.0+v)-difmuk-del; | ~~~~~~~~~~~~~^~~~~~~ ranlib.cc:1106:23: warning: 'difmuk' may be used uninitialized in this function [-Wmaybe-uninitialized] ranlib.cc:1094:40: warning: 'ignpoi' may be used uninitialized in this function [-Wmaybe-uninitialized] 1094 | py = pow(mu,(double)ignpoi)/ *(fact+ignpoi); | ~~~~^~~~~~~ ranlib.cc:1017:7: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] 1017 | g = mu+s*snorm(); | ~~^~~~~~~~~~~~~~ ranlib.cc:1030:9: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] 1030 | if(d*u >= difmuk*difmuk*difmuk) return ignpoi; | ~^~ ranlib.cc:1023:5: warning: 'l' may be used uninitialized in this function [-Wmaybe-uninitialized] 1023 | if(ignpoi >= l) return ignpoi; | ^~ rep.cc: In member function 'void ConstrainedRealVector::normalize()': rep.cc:753:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 753 | register unsigned int i; | ^ rep.cc:754:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 754 | register double tempsum = 0.0, hypotenuse; | ^~~~~~~ rep.cc:754:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 754 | register double tempsum = 0.0, hypotenuse; | ^~~~~~~~~~ rep.cc: In member function 'virtual Representation& ConstrainedRealVector::operator=(const Representation&)': rep.cc:812:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 812 | register unsigned int i; | ^ rep.cc: In copy constructor 'BitVector::BitVector(const BitVector&)': rep.cc:900:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 900 | for (register unsigned int i=0; i ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:641:10: note: in expansion of macro 'assertQuatOK' 641 | assertQuatOK( q_father ); | ^~~~~~~~~~~~ autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:652:10: note: in expansion of macro 'assertQuatOK' 652 | assertQuatOK( q_mother ); | ^~~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)': gs.cc:877:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 877 | register unsigned int i; | ^ gs.cc: In member function 'void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)': gs.cc:983:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^ gs.cc:983:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)': gs.cc:1262:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1262:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)': gs.cc:1327:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1327:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)': gs.cc:1420:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1420 | register unsigned int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc In file included from initautodock.h:31, from initautodock.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ initautodock.cc: In function 'void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)': initautodock.cc:76:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 76 | register int xyz = 0; | ^~~ initautodock.cc:77:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i = 0; | ^ In file included from input_state.h:30, from input_state.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ input_state.cc: In function 'int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)': input_state.cc:70:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 70 | (void) fgets(myline, LINELEN, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from investigate.h:33, from investigate.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ investigate.cc: In function 'void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)': investigate.cc:103:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int Test = -1; | ^~~~ investigate.cc:106:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 106 | register int i = 0; | ^ investigate.cc:120:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 120 | register int NumOutside = 0; | ^~~~~~~~~~ investigate.cc:121:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 121 | register int LocalTest = 0; | ^~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-ls.o `test -f 'ls.cc' || echo './'`ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc In file included from eval.h:38, from support.h:237, from ls.h:40, from ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from ls.h:40, from ls.cc:40: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ ls.cc: In function 'Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)': ls.cc:46:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^ ls.cc:46:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^~~~~ ls.cc: In member function 'virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:88:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~~ ls.cc:88:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~ ls.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register Real temp_rho = rho; | ^~~~~~~~ ls.cc:92:9: warning: unused variable 'thisQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:19: warning: unused variable 'prevQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ In file included from eval.h:38, from support.h:237, from mapping.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ ls.cc:92:29: warning: unused variable 'startQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ ls.cc: In member function 'virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:248:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ In file included from support.h:237, from mapping.cc:37: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ ls.cc:248:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~ ls.cc:248:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~ ls.cc:248:70: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from eval.h:38, from support.h:237, from minmeanmax.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from minmeanmax.cc:39: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ minmeanmax.cc: In function 'void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)': minmeanmax.cc:51:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable] 56 | double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ]; | ^~~~ In file included from mkNewState.h:31, from mkNewState.cc:33: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkNewState.cc: In function 'void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)': mkNewState.cc:56:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 56 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc mkTorTree.cc: In function 'void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)': mkTorTree.cc:88:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register int i = 0; | ^ mkTorTree.cc:89:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int j = 0; | ^ mkTorTree.cc:90:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int k = 0; | ^ mkTorTree.cc: At global scope: mkTorTree.cc:456:5: warning: 'int check_atomnumber(int, const int*, int, int, FILE*)' defined but not used [-Wunused-function] 456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord, | ^~~~~~~~~~~~~~~~ mkRandomState.cc: In function 'State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)': mkRandomState.cc:44:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 44 | register int i; | ^ In file included from nonbonds.cc:35: mdist.h: In function 'void mdist()': mdist.h:45:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:45:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:32:25: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ nonbonds.cc: In function 'void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)': nonbonds.cc:250:13: warning: '?:' using integer constants in boolean context [-Wint-in-bool-context] 248 | for (int j=0; j< | ~~ 249 | B_print_all_bonds | ~~~~~~~~~~~~~~~~~ 250 | ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | : nbonds[i]; // loop over this atom's "j" bonds | ~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from writePDBQT.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc prClusterHist.cc: In function 'void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)': prClusterHist.cc:51:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int Rank=0, | ^~~~ prClusterHist.cc:52:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | j=0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from prInitialState.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ prInitialState.cc: In function 'void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)': prInitialState.cc:59:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 59 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc prTorConList.cc: In function 'void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)': prTorConList.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 64 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc In file included from qmultiply.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc:42:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 42 | register const Quat *const ql, //left | ^~ qmultiply.cc:43:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 43 | register const Quat *const qr ) //right | ^~ qmultiply.cc: In function 'void qmultiply(Quat*, const Quat*, const Quat*)': qmultiply.cc:66:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc: In function 'AxisAngle QuatToAxisAngle(const Quat&)': qmultiply.cc:224:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 224 | register double angle = 2. * acos( input.w ); | ^~~~~ qmultiply.cc: In function 'Quat inverse(const Quat&)': qmultiply.cc:356:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~~ qmultiply.cc:356:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~ qmultiply.cc:357:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 357 | register double inv_squared_magnitude; | ^~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc In file included from qtransform.h:35, from qtransform.cc:32: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qtransform.cc: In function 'void qtransform(const Coord&, const Quat&, Real (*)[3], int)': qtransform.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 65 | register int a; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc rep.cc: In constructor 'IntVector::IntVector(int)': rep.cc:77:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i; | ^ rep.cc: In constructor 'IntVector::IntVector(int, int, int)': rep.cc:95:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i; | ^ rep.cc: In copy constructor 'IntVector::IntVector(const IntVector&)': rep.cc:129:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 129 | for (register unsigned int i=0; i 0.458) j = IMIN(l,m); | ~~^~~~~~~~~~~ ranlib.cc:1116:8: warning: 'omega' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ranlib.cc:1116:24: warning: 'c3' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~~~~^~~~ ranlib.cc:1116:24: warning: 'c2' may be used uninitialized in this function [-Wmaybe-uninitialized] ranlib.cc:1116:31: warning: 'c1' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~~~~~~~~~~~~^~~~ ranlib.cc:1116:38: warning: 'c0' may be used uninitialized in this function [-Wmaybe-uninitialized] 1116 | fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0); | ~~~~~~~~~~~~~~~~~~~~~~^~~~ ranlib.cc:1085:9: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] 1085 | if(c*fabs(u) > py*exp(px+e)-fy*exp(fx+e)) goto S50; | ~^~~~~~~~ ranlib.cc:1061:10: warning: 'u' may be used uninitialized in this function [-Wmaybe-uninitialized] 1061 | if(fy-u*fy <= py*exp(px-fx)) return ignpoi; | ~~^~~~~ ranlib.cc:1106:23: warning: 'fk' may be used uninitialized in this function [-Wmaybe-uninitialized] 1106 | px = fk*log(1.0+v)-difmuk-del; | ~~~~~~~~~~~~~^~~~~~~ ranlib.cc:1106:23: warning: 'difmuk' may be used uninitialized in this function [-Wmaybe-uninitialized] ranlib.cc:1094:40: warning: 'ignpoi' may be used uninitialized in this function [-Wmaybe-uninitialized] 1094 | py = pow(mu,(double)ignpoi)/ *(fact+ignpoi); | ~~~~^~~~~~~ ranlib.cc:1017:7: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] 1017 | g = mu+s*snorm(); | ~~^~~~~~~~~~~~~~ ranlib.cc:1030:9: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] 1030 | if(d*u >= difmuk*difmuk*difmuk) return ignpoi; | ~^~ ranlib.cc:1023:5: warning: 'l' may be used uninitialized in this function [-Wmaybe-uninitialized] 1023 | if(ignpoi >= l) return ignpoi; | ^~ scauchy.cc: In function 'Real scauchy2()': scauchy.cc:81:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^ scauchy.cc:81:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^ scauchy.cc:81:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^~ scauchy.cc:81:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc In file included from /usr/include/string.h:519, from setflags.cc:33: In function 'strncpy', inlined from 'setflags(int, char const**, char const*)' at setflags.cc:293:20: /usr/include/bits/string_fortified.h:95:34: warning: '__strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ setflags.cc: In function 'setflags(int, char const**, char const*)': setflags.cc:293:55: note: length computed here 293 | strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4); | ~~~~~~^~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc In file included from getInitialState.h:31, from simanneal.h:33, from simanneal.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ simanneal.cc: In function 'void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)': simanneal.cc:188:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 188 | register int i = 0; | ^ simanneal.cc:189:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 189 | register int nacc = 0; | ^~~~ simanneal.cc:190:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 190 | register int nAcc = 0; | ^~~~ simanneal.cc:191:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 191 | register int nAccProb = 0; | ^~~~~~~~ simanneal.cc:192:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 192 | register int nedge = 0; | ^~~~~ simanneal.cc:193:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 193 | register int nrej = 0; | ^~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc strindex.cc: In function 'int strindex(const char*, const char*)': strindex.cc:54:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^ strindex.cc:54:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^~ strindex.cc:54:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-success.o `test -f 'success.cc' || echo './'`success.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autodock4_omp-support.o `test -f 'support.cc' || echo './'`support.cc In file included from eval.h:38, from support.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.cc:34: eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ support.cc: In copy constructor 'Population::Population(const Population&)': support.cc:52:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | register int i; | ^ support.cc: In member function 'void Population::msort(int)': support.cc:147:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 147 | register int i; | ^ support.cc: In member function 'void Population::print(FILE*, int) const': support.cc:187:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register int i; | ^ support.cc: In member function 'void Population::printPopulationAsStates(FILE*, int, int) const': support.cc:348:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 348 | register int i; | ^ support.cc: In member function 'void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const': support.cc:388:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 388 | register int i; | ^ support.cc: In member function 'void Population::set_eob(int*)': support.cc:433:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | for (register int i=0; i './config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + ./configure --build=aarch64-amazon-linux-gnu --host=aarch64-amazon-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking build system type... aarch64-amazon-linux-gnu checking host system type... aarch64-amazon-linux-gnu checking for aarch64-amazon-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for sqrt in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for getpid... yes checking for GetProcessId... no checking for fchmod... yes checking for setlinebuf... yes checking for sysconf... yes checking for times... yes checking for getrusage... yes checking for pow... yes checking for sqrt... yes checking for strncasecmp... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands + make V=1 -j4 rm -f default_parameters.h csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat ./../autodock/AD4.1_bound.dat > default_parameters.h sh ./copyfilesfromAD make all-am make[1]: Entering directory '/builddir/build/BUILD/src/autogrid' g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp main.cpp: In function 'int main(int, char**)': main.cpp:427:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~ main.cpp:427:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:36: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:43: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~~~~~ main.cpp:427:55: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~~~~~~~ main.cpp:428:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~~~~~~~~ main.cpp:428:54: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~~ main.cpp:428:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:71: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:79: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:429:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register int closestH = 0; | ^~~~~~~~ main.cpp:214:5: warning: variable 'parameter_library_found' set but not used [-Wunused-but-set-variable] 214 | int parameter_library_found = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ main.cpp:263:8: warning: variable 'maptypeptr' set but not used [-Wunused-but-set-variable] 263 | char * maptypeptr; /*ptr for current map->type*/ | ^~~~~~~~~~ main.cpp:301:44: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable] 301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen; | ^~~~~~~~ main.cpp:302:21: warning: variable 'nonHB_nitrogen' set but not used [-Wunused-but-set-variable] 302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur; | ^~~~~~~~~~~~~~ main.cpp:302:46: warning: variable 'nonHB_sulphur' set but not used [-Wunused-but-set-variable] 302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur; | ^~~~~~~~~~~~~ main.cpp:305:5: warning: variable 'chlorine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~~ main.cpp:305:15: warning: variable 'bromine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~ main.cpp:305:24: warning: variable 'fluorine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~~ main.cpp:305:34: warning: variable 'iodine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~ main.cpp:307:5: warning: variable 'map_hydrogen' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~ main.cpp:307:19: warning: variable 'map_carbon' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~ main.cpp:307:31: warning: variable 'map_arom_carbon' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~~~~ main.cpp:307:48: warning: variable 'map_oxygen' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~ main.cpp:307:60: warning: variable 'map_nitrogen' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~ main.cpp:308:5: warning: variable 'map_nonHB_hydrogen' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~~ main.cpp:308:25: warning: variable 'map_nonHB_nitrogen' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~~ main.cpp:308:45: warning: variable 'map_sulphur' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~ main.cpp:308:58: warning: variable 'map_nonHB_sulphur' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~ main.cpp:309:5: warning: variable 'map_chlorine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~~ main.cpp:309:19: warning: variable 'map_bromine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~ main.cpp:309:32: warning: variable 'map_fluorine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~~ main.cpp:309:46: warning: variable 'map_iodine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~ g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp main.cpp:1040:306: warning: ' grid points); or try runn...' directive writing 83 bytes into a region of size between 0 and 39 [-Wformat-overflow=] 1040 | (void) sprintf( message, "There will not be enough memory to store these grid maps in AutoDock; \ntry reducing the number of ligand atom types (you have %d including electrostatics) \nor reducing the size of the grid maps (you asked for %d x %d x %d grid points); \n or try running AutoDock on a machine with more RAM than this one.\n", num_maps, n1[X], n1[Y], n1[Z] ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:900, from main.cpp:40: /usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output between 301 and 341 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ main.cpp:1447:46: warning: 'cB' may be used uninitialized in this function [-Wmaybe-uninitialized] 1447 | gridmap[ligtype].cB[rectype] = cB; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ main.cpp:1446:46: warning: 'cA' may be used uninitialized in this function [-Wmaybe-uninitialized] 1446 | gridmap[ligtype].cA[rectype] = cA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp read_parameter_library.cpp: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)': read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 207 | register int counter = 0; | ^~~~~~~ g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp calc_vina_potential.cpp: In function 'int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)': calc_vina_potential.cpp:110:9: warning: variable 'hydrogen' set but not used [-Wunused-but-set-variable] 110 | int hydrogen=-1; | ^~~~~~~~ calc_vina_potential.cpp:113:9: warning: variable 'oxygen' set but not used [-Wunused-but-set-variable] 113 | int oxygen=-1; | ^~~~~~ calc_vina_potential.cpp:114:9: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable] 114 | int nitrogen=-1; | ^~~~~~~~ calc_vina_potential.cpp:115:9: warning: variable 'fluorine' set but not used [-Wunused-but-set-variable] 115 | int fluorine=-1; | ^~~~~~~~ calc_vina_potential.cpp:116:9: warning: variable 'chlorine' set but not used [-Wunused-but-set-variable] 116 | int chlorine=-1; | ^~~~~~~~ calc_vina_potential.cpp:117:9: warning: variable 'bromine' set but not used [-Wunused-but-set-variable] 117 | int bromine=-1; | ^~~~~~~ calc_vina_potential.cpp:118:9: warning: variable 'iodine' set but not used [-Wunused-but-set-variable] 118 | int iodine=-1; | ^~~~~~ calc_vina_potential.cpp:283:56: warning: array subscript 16384 is above array bounds of 'Real[14][14]' [-Warray-bounds] 283 | printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]); | ~~~~~~~~~~~~~~~~~~~~~~~~^ In file included from atom_parameter_manager.h:30, from calc_vina_potential.cpp:26: ./../autodock/structs.h:260:10: note: while referencing 'e_vdW_Hb' 260 | Real e_vdW_Hb[NEINT][MAX_ATOM_TYPES][MAX_ATOM_TYPES]; // vdW & Hb energies | ^~~~~~~~ calc_vina_potential.cpp:283:12: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized] 283 | printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/src/.package_note-autodocksuite-4.2.6-16.amzn2023.aarch64.ld -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o -lm make[1]: Leaving directory '/builddir/build/BUILD/src/autogrid' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VyCam4 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 ++ dirname /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 + CFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -ftree-vectorize -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv8.2-a+crypto -mtune=neoverse-n1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/src/.package_note-autodocksuite-4.2.6-16.amzn2023.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd src + make -C autodock install DESTDIR=/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 make: Entering directory '/builddir/build/BUILD/src/autodock' make install-am make[1]: Entering directory '/builddir/build/BUILD/src/autodock' make[2]: Entering directory '/builddir/build/BUILD/src/autodock' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin' /usr/bin/install -c autodock4 autodock4.omp '/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/src/autodock' make[1]: Leaving directory '/builddir/build/BUILD/src/autodock' make: Leaving directory '/builddir/build/BUILD/src/autodock' + make -C autogrid install DESTDIR=/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 make: Entering directory '/builddir/build/BUILD/src/autogrid' make install-am make[1]: Entering directory '/builddir/build/BUILD/src/autogrid' make[2]: Entering directory '/builddir/build/BUILD/src/autogrid' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin' /usr/bin/install -c autogrid4 '/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/src/autogrid' make[1]: Leaving directory '/builddir/build/BUILD/src/autogrid' make: Leaving directory '/builddir/build/BUILD/src/autogrid' + rm -f /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64//usr/bin/autodock4.omp + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 4.2.6-16.amzn2023 --unique-debug-suffix -4.2.6-16.amzn2023.aarch64 --unique-debug-src-base autodocksuite-4.2.6-16.amzn2023.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/src explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin/autodock4 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin/autogrid4 extracting debug info from /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin/autodock4 extracting debug info from /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/bin/autogrid4 original debug info size: 2808kB, size after compression: 1868kB /usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 3034 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-python-bytecompile '' 0 1 Processing files: autodocksuite-4.2.6-16.amzn2023.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.asr4x8 + umask 022 + cd /builddir/build/BUILD + cd src + LICENSEDIR=/builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/share/licenses/autodocksuite + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/share/licenses/autodocksuite + cp -pr autodock/COPYING /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64/usr/share/licenses/autodocksuite + RPM_EC=0 ++ jobs -p + exit 0 Provides: autodocksuite = 4.2.6-16.amzn2023 autodocksuite(aarch-64) = 4.2.6-16.amzn2023 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH) Processing files: autodocksuite-debugsource-4.2.6-16.amzn2023.aarch64 Provides: autodocksuite-debugsource = 4.2.6-16.amzn2023 autodocksuite-debugsource(aarch-64) = 4.2.6-16.amzn2023 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: autodocksuite-debuginfo-4.2.6-16.amzn2023.aarch64 Provides: autodocksuite-debuginfo = 4.2.6-16.amzn2023 autodocksuite-debuginfo(aarch-64) = 4.2.6-16.amzn2023 debuginfo(build-id) = 3d89dbafb49cb750dde1ff9c5686ec6d42395458 debuginfo(build-id) = eb67393f8dda1682cf492ff47c8736d394bcbf0f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: autodocksuite-debugsource(aarch-64) = 4.2.6-16.amzn2023 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 Wrote: /builddir/build/RPMS/autodocksuite-4.2.6-16.amzn2023.aarch64.rpm Wrote: /builddir/build/RPMS/autodocksuite-debuginfo-4.2.6-16.amzn2023.aarch64.rpm Wrote: /builddir/build/RPMS/autodocksuite-debugsource-4.2.6-16.amzn2023.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.tm9SJ0 + umask 022 + cd /builddir/build/BUILD + cd src + /usr/bin/rm -rf /builddir/build/BUILDROOT/autodocksuite-4.2.6-16.amzn2023.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild autodocksuite-4.2.6-16.amzn2023.src.rpm Finish: build phase for autodocksuite-4.2.6-16.amzn2023.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root/var/log/dnf.log /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root/var/log/dnf.librepo.log /var/lib/mock/amazonlinux-2023-aarch64-1738861576.944076/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-16.amzn2023.src.rpm) Config(child) 0 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "autodocksuite", "epoch": null, "version": "4.2.6", "release": "16.amzn2023", "arch": "src" }, { "name": "autodocksuite-debuginfo", "epoch": null, "version": "4.2.6", "release": "16.amzn2023", "arch": "aarch64" }, { "name": "autodocksuite-debugsource", "epoch": null, "version": "4.2.6", "release": "16.amzn2023", "arch": "aarch64" }, { "name": "autodocksuite", "epoch": null, "version": "4.2.6", "release": "16.amzn2023", "arch": "aarch64" } ] } RPMResults finished