Warning: Permanently added '44.210.103.197' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10406251-epel-9-x86_64 --chroot epel-9-x86_64


Version: 1.8
PID: 22721
Logging PID: 22723
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 10406251,
 'buildroot_pkgs': [],
 'chroot': 'epel-9-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '628ae61f5a21396864a697d0e04856452533a76e',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/wibi-sk/pymol/apbs',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'apbs',
 'package_version': '3.0.0-17.el8',
 'project_dirname': 'pymol',
 'project_name': 'pymol',
 'project_owner': 'wibi-sk',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/wibi-sk/pymol/epel-9-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'wibi-sk/pymol--wibi-sk',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'wibi-sk',
 'tags': [],
 'task_id': '10406251-epel-9-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/wibi-sk/pymol/apbs /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/wibi-sk/pymol/apbs', '/var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs'...

Running: git checkout 628ae61f5a21396864a697d0e04856452533a76e --

cmd: ['git', 'checkout', '628ae61f5a21396864a697d0e04856452533a76e', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs
rc: 0
stdout: 
stderr: Note: switching to '628ae61f5a21396864a697d0e04856452533a76e'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 628ae61 automatic import of apbs

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading apbs-3.0.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o apbs-3.0.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/wibi-sk/pymol/apbs/apbs-3.0.0.tar.gz/md5/f54dff1a670e1dc766d5ad3f775b5de8/apbs-3.0.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 25.9M  100 25.9M    0     0   438M      0 --:--:-- --:--:-- --:--:--  439M
INFO: Reading stdout from command: md5sum apbs-3.0.0.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs/apbs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1777471069.527430 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.7 starting (python version = 3.14.2, NVR = mock-6.7-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs/apbs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1777471069.527430 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs/apbs.spec)  Config(rhel+epel-9-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.7
INFO: Mock Version: 6.7
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1777471069.527430/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.access.redhat.com/ubi9/ubi
INFO: Pulling image: registry.access.redhat.com/ubi9/ubi
INFO: Tagging container image as mock-bootstrap-dd0545c1-1f9d-4f97-b1b0-1d6d96a1dbae
INFO: Checking that 65c11561cbd77edee1d126ac5e9059d967c4c904def3a7d7e35916e015444b80 image matches host's architecture
INFO: Copy content of container 65c11561cbd77edee1d126ac5e9059d967c4c904def3a7d7e35916e015444b80 to /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1777471069.527430/root
INFO: mounting 65c11561cbd77edee1d126ac5e9059d967c4c904def3a7d7e35916e015444b80 with podman image mount
INFO: image 65c11561cbd77edee1d126ac5e9059d967c4c904def3a7d7e35916e015444b80 as /var/lib/containers/storage/overlay/b168845e6147289c9d85c718427076cbfbfeaed86bf486b7e7d0d0464a80ee3c/merged
INFO: umounting image 65c11561cbd77edee1d126ac5e9059d967c4c904def3a7d7e35916e015444b80 (/var/lib/containers/storage/overlay/b168845e6147289c9d85c718427076cbfbfeaed86bf486b7e7d0d0464a80ee3c/merged) with podman image umount
INFO: Removing image mock-bootstrap-dd0545c1-1f9d-4f97-b1b0-1d6d96a1dbae
INFO: Package manager dnf4 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf4 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.16.1.3-39.el9.x86_64
  python3-dnf-4.14.0-31.el9.noarch
  python3-dnf-plugins-core-4.3.0-24.el9_7.noarch
  yum-4.14.0-31.el9.noarch
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  11 kB/s | 1.5 kB     00:00    
Red Hat Enterprise Linux - BaseOS                41 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             40 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  43 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  260 kB/s |  24 kB     00:00    
Dependencies resolved.
================================================================================
 Package                     Arch   Version                     Repo       Size
================================================================================
Installing:
 bash                        x86_64 5.1.8-9.el9                 baseos    1.7 M
 bzip2                       x86_64 1.0.8-10.el9_5              baseos     60 k
 coreutils                   x86_64 8.32-39.el9                 baseos    1.2 M
 cpio                        x86_64 2.13-16.el9                 baseos    279 k
 diffutils                   x86_64 3.7-12.el9                  baseos    402 k
 epel-rpm-macros             noarch 9-18.el9                    epel       15 k
 findutils                   x86_64 1:4.8.0-7.el9               baseos    550 k
 gawk                        x86_64 5.1.0-6.el9                 baseos    1.0 M
 glibc-minimal-langpack      x86_64 2.34-231.el9_7.10           baseos     28 k
 grep                        x86_64 3.6-5.el9                   baseos    273 k
 gzip                        x86_64 1.12-1.el9                  baseos    167 k
 info                        x86_64 6.7-15.el9                  baseos    228 k
 patch                       x86_64 2.7.6-16.el9                appstream 130 k
 redhat-release              x86_64 9.7-0.7.el9                 baseos     53 k
 redhat-rpm-config           noarch 210-1.el9                   appstream  70 k
 rpm-build                   x86_64 4.16.1.3-39.el9             appstream  66 k
 sed                         x86_64 4.8-9.el9                   baseos    309 k
 tar                         x86_64 2:1.34-9.el9_7              baseos    885 k
 unzip                       x86_64 6.0-59.el9                  baseos    182 k
 util-linux                  x86_64 2.37.4-21.el9_7             baseos    2.3 M
 which                       x86_64 2.21-30.el9_6               baseos     41 k
 xz                          x86_64 5.2.5-8.el9_0               baseos    230 k
Installing dependencies:
 R-srpm-macros               noarch 1.3.7-1.el9                 epel       11 k
 alternatives                x86_64 1.24-2.el9                  baseos     42 k
 ansible-srpm-macros         noarch 1-16.el9                    epel       21 k
 audit-libs                  x86_64 3.1.5-7.el9                 baseos    119 k
 basesystem                  noarch 11-13.el9                   baseos    8.0 k
 binutils                    x86_64 2.35.2-67.el9_7.1           baseos    4.6 M
 binutils-gold               x86_64 2.35.2-67.el9_7.1           baseos    734 k
 bzip2-libs                  x86_64 1.0.8-10.el9_5              baseos     42 k
 ca-certificates             noarch 2025.2.80_v9.0.305-91.el9   baseos    1.0 M
 coreutils-common            x86_64 8.32-39.el9                 baseos    2.0 M
 cracklib                    x86_64 2.9.6-27.el9                baseos     99 k
 cracklib-dicts              x86_64 2.9.6-27.el9                baseos    3.6 M
 crypto-policies             noarch 20250905-1.git377cc42.el9_7 baseos     90 k
 curl                        x86_64 7.76.1-35.el9_7.3           baseos    292 k
 cyrus-sasl-lib              x86_64 2.1.27-22.el9               baseos    768 k
 debugedit                   x86_64 5.0-11.el9                  appstream  77 k
 dwz                         x86_64 0.16-1.el9                  appstream 134 k
 ed                          x86_64 1.14.2-12.el9               baseos     78 k
 efi-srpm-macros             noarch 6-4.el9                     appstream  21 k
 elfutils                    x86_64 0.193-1.el9                 baseos    598 k
 elfutils-debuginfod-client  x86_64 0.193-1.el9                 baseos     44 k
 elfutils-default-yama-scope noarch 0.193-1.el9                 baseos    9.7 k
 elfutils-libelf             x86_64 0.193-1.el9                 baseos    205 k
 elfutils-libs               x86_64 0.193-1.el9                 baseos    268 k
 file                        x86_64 5.39-16.el9                 baseos     52 k
 file-libs                   x86_64 5.39-16.el9                 baseos    593 k
 filesystem                  x86_64 3.16-5.el9                  baseos    4.8 M
 fonts-srpm-macros           noarch 1:2.0.5-7.el9.1             appstream  29 k
 forge-srpm-macros           noarch 0.4.0-1.el9                 epel       19 k
 fpc-srpm-macros             noarch 1.3-7.el9                   epel      7.5 k
 gdb-minimal                 x86_64 16.3-2.el9                  appstream 4.4 M
 gdbm-libs                   x86_64 1:1.23-1.el9                baseos     59 k
 ghc-srpm-macros             noarch 1.5.0-6.el9                 appstream 9.0 k
 ghc-srpm-macros-epel        noarch 1.9.1-1.el9                 epel      7.5 k
 glibc                       x86_64 2.34-231.el9_7.10           baseos    2.0 M
 glibc-common                x86_64 2.34-231.el9_7.10           baseos    312 k
 glibc-gconv-extra           x86_64 2.34-231.el9_7.10           baseos    1.7 M
 gmp                         x86_64 1:6.2.0-13.el9              baseos    319 k
 go-srpm-macros              noarch 3.6.0-14.el9_7              appstream  33 k
 go-srpm-macros-epel         noarch 3.8.0-1.el9                 epel       26 k
 groff-base                  x86_64 1.22.4-10.el9               baseos    1.1 M
 json-c                      x86_64 0.14-11.el9                 baseos     45 k
 kernel-srpm-macros          noarch 1.0-14.el9                  appstream  14 k
 keyutils-libs               x86_64 1.6.3-1.el9                 baseos     34 k
 krb5-libs                   x86_64 1.21.1-9.el9_7              baseos    772 k
 libacl                      x86_64 2.3.1-4.el9                 baseos     24 k
 libarchive                  x86_64 3.5.3-9.el9_7               baseos    393 k
 libattr                     x86_64 2.5.1-3.el9                 baseos     20 k
 libblkid                    x86_64 2.37.4-21.el9_7             baseos    111 k
 libbrotli                   x86_64 1.0.9-9.el9_7               baseos    319 k
 libcap                      x86_64 2.48-10.el9                 baseos     70 k
 libcap-ng                   x86_64 0.8.2-7.el9                 baseos     36 k
 libcom_err                  x86_64 1.46.5-8.el9                baseos     26 k
 libcurl                     x86_64 7.76.1-35.el9_7.3           baseos    283 k
 libdb                       x86_64 5.3.28-57.el9_6             baseos    737 k
 libeconf                    x86_64 0.4.1-4.el9                 baseos     30 k
 libevent                    x86_64 2.1.12-8.el9_4              baseos    266 k
 libfdisk                    x86_64 2.37.4-21.el9_7             baseos    158 k
 libffi                      x86_64 3.4.2-8.el9                 baseos     40 k
 libgcc                      x86_64 11.5.0-11.el9               baseos     85 k
 libgcrypt                   x86_64 1.10.0-11.el9               baseos    510 k
 libgomp                     x86_64 11.5.0-11.el9               baseos    257 k
 libgpg-error                x86_64 1.42-5.el9                  baseos    220 k
 libidn2                     x86_64 2.3.0-7.el9                 baseos    105 k
 libmount                    x86_64 2.37.4-21.el9_7             baseos    138 k
 libnghttp2                  x86_64 1.43.0-6.el9_7.1            baseos     78 k
 libpkgconf                  x86_64 1.7.3-10.el9                baseos     37 k
 libpsl                      x86_64 0.21.1-5.el9                baseos     66 k
 libpwquality                x86_64 1.4.4-8.el9                 baseos    123 k
 libselinux                  x86_64 3.6-3.el9                   baseos     88 k
 libsemanage                 x86_64 3.6-5.el9_6                 baseos    121 k
 libsepol                    x86_64 3.6-3.el9                   baseos    331 k
 libsigsegv                  x86_64 2.13-4.el9                  baseos     30 k
 libsmartcols                x86_64 2.37.4-21.el9_7             baseos     67 k
 libssh                      x86_64 0.10.4-17.el9_7             baseos    214 k
 libssh-config               noarch 0.10.4-17.el9_7             baseos    8.1 k
 libstdc++                   x86_64 11.5.0-11.el9               baseos    742 k
 libtasn1                    x86_64 4.16.0-9.el9                baseos     77 k
 libtool-ltdl                x86_64 2.4.6-46.el9                baseos     37 k
 libunistring                x86_64 0.9.10-15.el9               baseos    499 k
 libutempter                 x86_64 1.2.1-6.el9                 baseos     30 k
 libuuid                     x86_64 2.37.4-21.el9_7             baseos     32 k
 libverto                    x86_64 0.3.2-3.el9                 baseos     24 k
 libxcrypt                   x86_64 4.4.18-3.el9                baseos    120 k
 libxml2                     x86_64 2.9.13-14.el9_7             baseos    747 k
 libzstd                     x86_64 1.5.5-1.el9                 baseos    297 k
 lua-libs                    x86_64 5.4.4-4.el9                 baseos    132 k
 lua-srpm-macros             noarch 1-6.el9                     appstream  10 k
 lz4-libs                    x86_64 1.9.3-5.el9                 baseos     69 k
 mpfr                        x86_64 4.1.0-7.el9                 baseos    329 k
 ncurses                     x86_64 6.2-12.20210508.el9         baseos    406 k
 ncurses-base                noarch 6.2-12.20210508.el9         baseos     96 k
 ncurses-libs                x86_64 6.2-12.20210508.el9         baseos    328 k
 ocaml-srpm-macros           noarch 6-6.el9                     appstream 9.1 k
 openblas-srpm-macros        noarch 2-11.el9                    appstream 8.6 k
 openldap                    x86_64 2.6.8-4.el9                 baseos    290 k
 openssl                     x86_64 1:3.5.1-7.el9_7             baseos    1.5 M
 openssl-fips-provider       x86_64 3.0.7-8.el9                 baseos    9.2 k
 openssl-fips-provider-so    x86_64 3.0.7-8.el9                 baseos    576 k
 openssl-libs                x86_64 1:3.5.1-7.el9_7             baseos    2.3 M
 p11-kit                     x86_64 0.25.3-3.el9_5              baseos    536 k
 p11-kit-trust               x86_64 0.25.3-3.el9_5              baseos    144 k
 pam                         x86_64 1.5.1-26.el9_6              baseos    622 k
 pcre                        x86_64 8.44-4.el9                  baseos    200 k
 pcre2                       x86_64 10.40-6.el9                 baseos    236 k
 pcre2-syntax                noarch 10.40-6.el9                 baseos    144 k
 perl-AutoLoader             noarch 5.74-481.1.el9_6            appstream  21 k
 perl-B                      x86_64 1.80-481.1.el9_6            appstream 180 k
 perl-Carp                   noarch 1.50-460.el9                appstream  31 k
 perl-Class-Struct           noarch 0.66-481.1.el9_6            appstream  22 k
 perl-Data-Dumper            x86_64 2.174-462.el9               appstream  59 k
 perl-Digest                 noarch 1.19-4.el9                  appstream  29 k
 perl-Digest-MD5             x86_64 2.58-4.el9                  appstream  39 k
 perl-Encode                 x86_64 4:3.08-462.el9              appstream 1.7 M
 perl-Errno                  x86_64 1.30-481.1.el9_6            appstream  15 k
 perl-Exporter               noarch 5.74-461.el9                appstream  34 k
 perl-Fcntl                  x86_64 1.13-481.1.el9_6            appstream  20 k
 perl-File-Basename          noarch 2.85-481.1.el9_6            appstream  17 k
 perl-File-Path              noarch 2.18-4.el9                  appstream  38 k
 perl-File-Temp              noarch 1:0.231.100-4.el9           appstream  63 k
 perl-File-stat              noarch 1.09-481.1.el9_6            appstream  17 k
 perl-FileHandle             noarch 2.03-481.1.el9_6            appstream  15 k
 perl-Getopt-Long            noarch 1:2.52-4.el9                appstream  64 k
 perl-Getopt-Std             noarch 1.12-481.1.el9_6            appstream  15 k
 perl-HTTP-Tiny              noarch 0.076-462.el9               appstream  57 k
 perl-IO                     x86_64 1.43-481.1.el9_6            appstream  88 k
 perl-IO-Socket-IP           noarch 0.41-5.el9                  appstream  45 k
 perl-IO-Socket-SSL          noarch 2.073-2.el9                 appstream 221 k
 perl-IPC-Open3              noarch 1.21-481.1.el9_6            appstream  22 k
 perl-MIME-Base64            x86_64 3.16-4.el9                  appstream  34 k
 perl-Mozilla-CA             noarch 20200520-6.el9              appstream  14 k
 perl-Net-SSLeay             x86_64 1.94-3.el9                  appstream 414 k
 perl-POSIX                  x86_64 1.94-481.1.el9_6            appstream  96 k
 perl-PathTools              x86_64 3.78-461.el9                appstream  92 k
 perl-Pod-Escapes            noarch 1:1.07-460.el9              appstream  22 k
 perl-Pod-Perldoc            noarch 3.28.01-461.el9             appstream  92 k
 perl-Pod-Simple             noarch 1:3.42-4.el9                appstream 229 k
 perl-Pod-Usage              noarch 4:2.01-4.el9                appstream  43 k
 perl-Scalar-List-Utils      x86_64 4:1.56-462.el9              appstream  75 k
 perl-SelectSaver            noarch 1.02-481.1.el9_6            appstream  11 k
 perl-Socket                 x86_64 4:2.031-4.el9               appstream  58 k
 perl-Storable               x86_64 1:3.21-460.el9              appstream  98 k
 perl-Symbol                 noarch 1.08-481.1.el9_6            appstream  14 k
 perl-Term-ANSIColor         noarch 5.01-461.el9                appstream  51 k
 perl-Term-Cap               noarch 1.17-460.el9                appstream  24 k
 perl-Text-ParseWords        noarch 3.30-460.el9                appstream  18 k
 perl-Text-Tabs+Wrap         noarch 2013.0523-460.el9           appstream  25 k
 perl-Time-Local             noarch 2:1.300-7.el9               appstream  37 k
 perl-URI                    noarch 5.09-3.el9                  appstream 125 k
 perl-base                   noarch 2.27-481.1.el9_6            appstream  16 k
 perl-constant               noarch 1.33-461.el9                appstream  25 k
 perl-if                     noarch 0.60.800-481.1.el9_6        appstream  14 k
 perl-interpreter            x86_64 4:5.32.1-481.1.el9_6        appstream  70 k
 perl-libnet                 noarch 3.13-4.el9                  appstream 134 k
 perl-libs                   x86_64 4:5.32.1-481.1.el9_6        appstream 2.2 M
 perl-mro                    x86_64 1.23-481.1.el9_6            appstream  28 k
 perl-overload               noarch 1.31-481.1.el9_6            appstream  45 k
 perl-overloading            noarch 0.02-481.1.el9_6            appstream  12 k
 perl-parent                 noarch 1:0.238-460.el9             appstream  16 k
 perl-podlators              noarch 1:4.14-460.el9              appstream 118 k
 perl-srpm-macros            noarch 1-41.el9                    appstream 9.4 k
 perl-subs                   noarch 1.03-481.1.el9_6            appstream  11 k
 perl-vars                   noarch 1.05-481.1.el9_6            appstream  13 k
 pkgconf                     x86_64 1.7.3-10.el9                baseos     45 k
 pkgconf-m4                  noarch 1.7.3-10.el9                baseos     16 k
 pkgconf-pkg-config          x86_64 1.7.3-10.el9                baseos     12 k
 popt                        x86_64 1.18-8.el9                  baseos     69 k
 publicsuffix-list-dafsa     noarch 20210518-3.el9              baseos     59 k
 pyproject-srpm-macros       noarch 1.16.2-1.el9                appstream  14 k
 python-srpm-macros          noarch 3.9-54.el9                  appstream  18 k
 qt5-srpm-macros             noarch 5.15.9-1.el9                appstream 9.1 k
 qt6-srpm-macros             noarch 6.6.2-1.el9                 epel      8.7 k
 readline                    x86_64 8.1-4.el9                   baseos    215 k
 rpm                         x86_64 4.16.1.3-39.el9             baseos    535 k
 rpm-build-libs              x86_64 4.16.1.3-39.el9             baseos     88 k
 rpm-libs                    x86_64 4.16.1.3-39.el9             baseos    307 k
 rpmautospec-rpm-macros      noarch 0.8.4-1.el9                 epel       10 k
 rust-srpm-macros            noarch 17-4.el9                    appstream  11 k
 rust-srpm-macros-epel       noarch 26.3-1.el9                  epel       10 k
 setup                       noarch 2.13.7-10.el9               baseos    150 k
 shadow-utils                x86_64 2:4.9-15.el9                baseos    1.2 M
 sqlite-libs                 x86_64 3.34.1-9.el9_7              baseos    642 k
 systemd-libs                x86_64 252-55.el9_7.8              baseos    662 k
 tzdata                      noarch 2026a-1.el9                 baseos    911 k
 util-linux-core             x86_64 2.37.4-21.el9_7             baseos    464 k
 xz-libs                     x86_64 5.2.5-8.el9_0               baseos     94 k
 zip                         x86_64 3.0-35.el9                  baseos    270 k
 zlib                        x86_64 1.2.11-40.el9               baseos     93 k
 zstd                        x86_64 1.5.5-1.el9                 baseos    468 k

Transaction Summary
================================================================================
Install  211 Packages

Total size: 70 M
Installed size: 222 M
Downloading Packages:
[SKIPPED] basesystem-11-13.el9.noarch.rpm: Already downloaded                  
[SKIPPED] cpio-2.13-16.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] cracklib-2.9.6-27.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] ed-1.14.2-12.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] grep-3.6-5.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] groff-base-1.22.4-10.el9.x86_64.rpm: Already downloaded              
[SKIPPED] info-6.7-15.el9.x86_64.rpm: Already downloaded                       
[SKIPPED] json-c-0.14-11.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libattr-2.5.1-3.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libcap-ng-0.8.2-7.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libgpg-error-1.42-5.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libidn2-2.3.0-7.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libpsl-0.21.1-5.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libpwquality-1.4.4-8.el9.x86_64.rpm: Already downloaded              
[SKIPPED] libsigsegv-2.13-4.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libunistring-0.9.10-15.el9.x86_64.rpm: Already downloaded            
[SKIPPED] libutempter-1.2.1-6.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libverto-0.3.2-3.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libxcrypt-4.4.18-3.el9.x86_64.rpm: Already downloaded                
[SKIPPED] lz4-libs-1.9.3-5.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] mpfr-4.1.0-7.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] popt-1.18-8.el9.x86_64.rpm: Already downloaded                       
[SKIPPED] publicsuffix-list-dafsa-20210518-3.el9.noarch.rpm: Already downloaded
[SKIPPED] readline-8.1-4.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] sed-4.8-9.el9.x86_64.rpm: Already downloaded                         
[SKIPPED] cracklib-dicts-2.9.6-27.el9.x86_64.rpm: Already downloaded           
[SKIPPED] diffutils-3.7-12.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] gawk-5.1.0-6.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] xz-5.2.5-8.el9_0.x86_64.rpm: Already downloaded                      
[SKIPPED] xz-libs-5.2.5-8.el9_0.x86_64.rpm: Already downloaded                 
[SKIPPED] gzip-1.12-1.el9.x86_64.rpm: Already downloaded                       
[SKIPPED] keyutils-libs-1.6.3-1.el9.x86_64.rpm: Already downloaded             
[SKIPPED] libpkgconf-1.7.3-10.el9.x86_64.rpm: Already downloaded               
[SKIPPED] pkgconf-1.7.3-10.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] pkgconf-m4-1.7.3-10.el9.noarch.rpm: Already downloaded               
[SKIPPED] pkgconf-pkg-config-1.7.3-10.el9.x86_64.rpm: Already downloaded       
[SKIPPED] zip-3.0-35.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] gmp-6.2.0-13.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] libffi-3.4.2-8.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] lua-libs-5.4.4-4.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] zlib-1.2.11-40.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] bash-5.1.8-9.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] file-5.39-16.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] file-libs-5.39-16.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libacl-2.3.1-4.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] setup-2.13.7-10.el9.noarch.rpm: Already downloaded                   
[SKIPPED] libevent-2.1.12-8.el9_4.x86_64.rpm: Already downloaded               
[SKIPPED] filesystem-3.16-5.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] findutils-4.8.0-7.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] gdbm-libs-1.23-1.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libeconf-0.4.1-4.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libgcrypt-1.10.0-11.el9.x86_64.rpm: Already downloaded               
[SKIPPED] pcre-8.44-4.el9.x86_64.rpm: Already downloaded                       
[SKIPPED] pcre2-10.40-6.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] pcre2-syntax-10.40-6.el9.noarch.rpm: Already downloaded              
[SKIPPED] bzip2-1.0.8-10.el9_5.x86_64.rpm: Already downloaded                  
[SKIPPED] bzip2-libs-1.0.8-10.el9_5.x86_64.rpm: Already downloaded             
[SKIPPED] p11-kit-0.25.3-3.el9_5.x86_64.rpm: Already downloaded                
[SKIPPED] p11-kit-trust-0.25.3-3.el9_5.x86_64.rpm: Already downloaded          
[SKIPPED] alternatives-1.24-2.el9.x86_64.rpm: Already downloaded               
[SKIPPED] coreutils-8.32-39.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] coreutils-common-8.32-39.el9.x86_64.rpm: Already downloaded          
[SKIPPED] libselinux-3.6-3.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libsemanage-3.6-5.el9_6.x86_64.rpm: Already downloaded               
[SKIPPED] libtasn1-4.16.0-9.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libtool-ltdl-2.4.6-46.el9.x86_64.rpm: Already downloaded             
[SKIPPED] libzstd-1.5.5-1.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] openldap-2.6.8-4.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] zstd-1.5.5-1.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] libdb-5.3.28-57.el9_6.x86_64.rpm: Already downloaded                 
[SKIPPED] elfutils-0.193-1.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] elfutils-libs-0.193-1.el9.x86_64.rpm: Already downloaded             
[SKIPPED] libgcc-11.5.0-11.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] ncurses-libs-6.2-12.20210508.el9.x86_64.rpm: Already downloaded      
[SKIPPED] pam-1.5.1-26.el9_6.x86_64.rpm: Already downloaded                    
[SKIPPED] rpm-build-libs-4.16.1.3-39.el9.x86_64.rpm: Already downloaded        
[SKIPPED] unzip-6.0-59.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] which-2.21-30.el9_6.x86_64.rpm: Already downloaded                   
[SKIPPED] audit-libs-3.1.5-7.el9.x86_64.rpm: Already downloaded                
[SKIPPED] crypto-policies-20250905-1.git377cc42.el9_7.noarch.rpm: Already downloaded
[SKIPPED] cyrus-sasl-lib-2.1.27-22.el9.x86_64.rpm: Already downloaded          
[SKIPPED] elfutils-debuginfod-client-0.193-1.el9.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-default-yama-scope-0.193-1.el9.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.193-1.el9.x86_64.rpm: Already downloaded           
[SKIPPED] libcap-2.48-10.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libcom_err-1.46.5-8.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libgomp-11.5.0-11.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libsepol-3.6-3.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libstdc++-11.5.0-11.el9.x86_64.rpm: Already downloaded               
[SKIPPED] ncurses-6.2-12.20210508.el9.x86_64.rpm: Already downloaded           
[SKIPPED] ncurses-base-6.2-12.20210508.el9.noarch.rpm: Already downloaded      
[SKIPPED] openssl-fips-provider-3.0.7-8.el9.x86_64.rpm: Already downloaded     
[SKIPPED] openssl-fips-provider-so-3.0.7-8.el9.x86_64.rpm: Already downloaded  
[SKIPPED] rpm-4.16.1.3-39.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] rpm-libs-4.16.1.3-39.el9.x86_64.rpm: Already downloaded              
[SKIPPED] shadow-utils-4.9-15.el9.x86_64.rpm: Already downloaded               
[SKIPPED] redhat-release-9.7-0.7.el9.x86_64.rpm: Already downloaded            
[SKIPPED] sqlite-libs-3.34.1-9.el9_7.x86_64.rpm: Already downloaded            
[SKIPPED] ca-certificates-2025.2.80_v9.0.305-91.el9.noarch.rpm: Already downloaded
[SKIPPED] libxml2-2.9.13-14.el9_7.x86_64.rpm: Already downloaded               
[SKIPPED] libssh-0.10.4-17.el9_7.x86_64.rpm: Already downloaded                
[SKIPPED] libssh-config-0.10.4-17.el9_7.noarch.rpm: Already downloaded         
[SKIPPED] binutils-2.35.2-67.el9_7.1.x86_64.rpm: Already downloaded            
[SKIPPED] binutils-gold-2.35.2-67.el9_7.1.x86_64.rpm: Already downloaded       
[SKIPPED] tar-1.34-9.el9_7.x86_64.rpm: Already downloaded                      
[SKIPPED] curl-7.76.1-35.el9_7.3.x86_64.rpm: Already downloaded                
[SKIPPED] libcurl-7.76.1-35.el9_7.3.x86_64.rpm: Already downloaded             
[SKIPPED] openssl-3.5.1-7.el9_7.x86_64.rpm: Already downloaded                 
[SKIPPED] openssl-libs-3.5.1-7.el9_7.x86_64.rpm: Already downloaded            
[SKIPPED] libblkid-2.37.4-21.el9_7.x86_64.rpm: Already downloaded              
[SKIPPED] libfdisk-2.37.4-21.el9_7.x86_64.rpm: Already downloaded              
[SKIPPED] libmount-2.37.4-21.el9_7.x86_64.rpm: Already downloaded              
[SKIPPED] libsmartcols-2.37.4-21.el9_7.x86_64.rpm: Already downloaded          
[SKIPPED] libuuid-2.37.4-21.el9_7.x86_64.rpm: Already downloaded               
[SKIPPED] util-linux-2.37.4-21.el9_7.x86_64.rpm: Already downloaded            
[SKIPPED] util-linux-core-2.37.4-21.el9_7.x86_64.rpm: Already downloaded       
[SKIPPED] libbrotli-1.0.9-9.el9_7.x86_64.rpm: Already downloaded               
[SKIPPED] glibc-2.34-231.el9_7.10.x86_64.rpm: Already downloaded               
[SKIPPED] glibc-common-2.34-231.el9_7.10.x86_64.rpm: Already downloaded        
[SKIPPED] glibc-gconv-extra-2.34-231.el9_7.10.x86_64.rpm: Already downloaded   
[SKIPPED] glibc-minimal-langpack-2.34-231.el9_7.10.x86_64.rpm: Already downloaded
[SKIPPED] tzdata-2026a-1.el9.noarch.rpm: Already downloaded                    
[SKIPPED] systemd-libs-252-55.el9_7.8.x86_64.rpm: Already downloaded           
[SKIPPED] libnghttp2-1.43.0-6.el9_7.1.x86_64.rpm: Already downloaded           
[SKIPPED] libarchive-3.5.3-9.el9_7.x86_64.rpm: Already downloaded              
[SKIPPED] krb5-libs-1.21.1-9.el9_7.x86_64.rpm: Already downloaded              
[SKIPPED] ghc-srpm-macros-1.5.0-6.el9.noarch.rpm: Already downloaded           
[SKIPPED] lua-srpm-macros-1-6.el9.noarch.rpm: Already downloaded               
[SKIPPED] perl-Data-Dumper-2.174-462.el9.x86_64.rpm: Already downloaded        
[SKIPPED] perl-Digest-MD5-2.58-4.el9.x86_64.rpm: Already downloaded            
[SKIPPED] perl-Encode-3.08-462.el9.x86_64.rpm: Already downloaded              
[SKIPPED] perl-Mozilla-CA-20200520-6.el9.noarch.rpm: Already downloaded        
[SKIPPED] perl-Pod-Simple-3.42-4.el9.noarch.rpm: Already downloaded            
[SKIPPED] perl-Term-Cap-1.17-460.el9.noarch.rpm: Already downloaded            
[SKIPPED] perl-Time-Local-1.300-7.el9.noarch.rpm: Already downloaded           
[SKIPPED] rust-srpm-macros-17-4.el9.noarch.rpm: Already downloaded             
[SKIPPED] perl-Pod-Escapes-1.07-460.el9.noarch.rpm: Already downloaded         
[SKIPPED] perl-Storable-3.21-460.el9.x86_64.rpm: Already downloaded            
[SKIPPED] perl-podlators-4.14-460.el9.noarch.rpm: Already downloaded           
[SKIPPED] perl-Exporter-5.74-461.el9.noarch.rpm: Already downloaded            
[SKIPPED] perl-File-Temp-0.231.100-4.el9.noarch.rpm: Already downloaded        
[SKIPPED] perl-Getopt-Long-2.52-4.el9.noarch.rpm: Already downloaded           
[SKIPPED] perl-MIME-Base64-3.16-4.el9.x86_64.rpm: Already downloaded           
[SKIPPED] perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch.rpm: Already downloaded 
[SKIPPED] perl-parent-0.238-460.el9.noarch.rpm: Already downloaded             
[SKIPPED] perl-srpm-macros-1-41.el9.noarch.rpm: Already downloaded             
[SKIPPED] openblas-srpm-macros-2-11.el9.noarch.rpm: Already downloaded         
[SKIPPED] perl-Digest-1.19-4.el9.noarch.rpm: Already downloaded                
[SKIPPED] perl-File-Path-2.18-4.el9.noarch.rpm: Already downloaded             
[SKIPPED] perl-IO-Socket-IP-0.41-5.el9.noarch.rpm: Already downloaded          
[SKIPPED] perl-Pod-Usage-2.01-4.el9.noarch.rpm: Already downloaded             
[SKIPPED] perl-Socket-2.031-4.el9.x86_64.rpm: Already downloaded               
[SKIPPED] perl-Term-ANSIColor-5.01-461.el9.noarch.rpm: Already downloaded      
[SKIPPED] perl-Text-ParseWords-3.30-460.el9.noarch.rpm: Already downloaded     
[SKIPPED] perl-URI-5.09-3.el9.noarch.rpm: Already downloaded                   
[SKIPPED] perl-constant-1.33-461.el9.noarch.rpm: Already downloaded            
[SKIPPED] fonts-srpm-macros-2.0.5-7.el9.1.noarch.rpm: Already downloaded       
[SKIPPED] ocaml-srpm-macros-6-6.el9.noarch.rpm: Already downloaded             
[SKIPPED] patch-2.7.6-16.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] perl-Pod-Perldoc-3.28.01-461.el9.noarch.rpm: Already downloaded      
[SKIPPED] perl-libnet-3.13-4.el9.noarch.rpm: Already downloaded                
[SKIPPED] perl-Carp-1.50-460.el9.noarch.rpm: Already downloaded                
[SKIPPED] perl-PathTools-3.78-461.el9.x86_64.rpm: Already downloaded           
[SKIPPED] qt5-srpm-macros-5.15.9-1.el9.noarch.rpm: Already downloaded          
[SKIPPED] perl-HTTP-Tiny-0.076-462.el9.noarch.rpm: Already downloaded          
[SKIPPED] python-srpm-macros-3.9-54.el9.noarch.rpm: Already downloaded         
[SKIPPED] perl-IO-Socket-SSL-2.073-2.el9.noarch.rpm: Already downloaded        
[SKIPPED] perl-Scalar-List-Utils-1.56-462.el9.x86_64.rpm: Already downloaded   
[SKIPPED] pyproject-srpm-macros-1.16.2-1.el9.noarch.rpm: Already downloaded    
[SKIPPED] perl-AutoLoader-5.74-481.1.el9_6.noarch.rpm: Already downloaded      
[SKIPPED] perl-B-1.80-481.1.el9_6.x86_64.rpm: Already downloaded               
[SKIPPED] perl-Class-Struct-0.66-481.1.el9_6.noarch.rpm: Already downloaded    
[SKIPPED] perl-Errno-1.30-481.1.el9_6.x86_64.rpm: Already downloaded           
[SKIPPED] perl-Fcntl-1.13-481.1.el9_6.x86_64.rpm: Already downloaded           
[SKIPPED] perl-File-Basename-2.85-481.1.el9_6.noarch.rpm: Already downloaded   
[SKIPPED] perl-File-stat-1.09-481.1.el9_6.noarch.rpm: Already downloaded       
[SKIPPED] perl-FileHandle-2.03-481.1.el9_6.noarch.rpm: Already downloaded      
[SKIPPED] perl-Getopt-Std-1.12-481.1.el9_6.noarch.rpm: Already downloaded      
[SKIPPED] perl-IO-1.43-481.1.el9_6.x86_64.rpm: Already downloaded              
[SKIPPED] perl-IPC-Open3-1.21-481.1.el9_6.noarch.rpm: Already downloaded       
[SKIPPED] perl-POSIX-1.94-481.1.el9_6.x86_64.rpm: Already downloaded           
[SKIPPED] perl-SelectSaver-1.02-481.1.el9_6.noarch.rpm: Already downloaded     
[SKIPPED] perl-Symbol-1.08-481.1.el9_6.noarch.rpm: Already downloaded          
[SKIPPED] perl-base-2.27-481.1.el9_6.noarch.rpm: Already downloaded            
[SKIPPED] perl-if-0.60.800-481.1.el9_6.noarch.rpm: Already downloaded          
[SKIPPED] perl-interpreter-5.32.1-481.1.el9_6.x86_64.rpm: Already downloaded   
[SKIPPED] perl-libs-5.32.1-481.1.el9_6.x86_64.rpm: Already downloaded          
[SKIPPED] perl-mro-1.23-481.1.el9_6.x86_64.rpm: Already downloaded             
[SKIPPED] perl-overload-1.31-481.1.el9_6.noarch.rpm: Already downloaded        
[SKIPPED] perl-overloading-0.02-481.1.el9_6.noarch.rpm: Already downloaded     
[SKIPPED] perl-subs-1.03-481.1.el9_6.noarch.rpm: Already downloaded            
[SKIPPED] perl-vars-1.05-481.1.el9_6.noarch.rpm: Already downloaded            
[SKIPPED] dwz-0.16-1.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] debugedit-5.0-11.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] efi-srpm-macros-6-4.el9.noarch.rpm: Already downloaded               
[SKIPPED] gdb-minimal-16.3-2.el9.x86_64.rpm: Already downloaded                
[SKIPPED] kernel-srpm-macros-1.0-14.el9.noarch.rpm: Already downloaded         
[SKIPPED] perl-Net-SSLeay-1.94-3.el9.x86_64.rpm: Already downloaded            
[SKIPPED] redhat-rpm-config-210-1.el9.noarch.rpm: Already downloaded           
[SKIPPED] rpm-build-4.16.1.3-39.el9.x86_64.rpm: Already downloaded             
[SKIPPED] go-srpm-macros-3.6.0-14.el9_7.noarch.rpm: Already downloaded         
[SKIPPED] R-srpm-macros-1.3.7-1.el9.noarch.rpm: Already downloaded             
[SKIPPED] ansible-srpm-macros-1-16.el9.noarch.rpm: Already downloaded          
[SKIPPED] epel-rpm-macros-9-18.el9.noarch.rpm: Already downloaded              
[SKIPPED] forge-srpm-macros-0.4.0-1.el9.noarch.rpm: Already downloaded         
[SKIPPED] fpc-srpm-macros-1.3-7.el9.noarch.rpm: Already downloaded             
[SKIPPED] ghc-srpm-macros-epel-1.9.1-1.el9.noarch.rpm: Already downloaded      
[SKIPPED] go-srpm-macros-epel-3.8.0-1.el9.noarch.rpm: Already downloaded       
[SKIPPED] qt6-srpm-macros-6.6.2-1.el9.noarch.rpm: Already downloaded           
[SKIPPED] rpmautospec-rpm-macros-0.8.4-1.el9.noarch.rpm: Already downloaded    
[SKIPPED] rust-srpm-macros-epel-26.3-1.el9.noarch.rpm: Already downloaded      
Red Hat Enterprise Linux - BaseOS               3.5 MB/s | 3.6 kB     00:00    
Importing GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Importing GPG key 0x5A6340B3:
 Userid     : "Red Hat, Inc. (auxiliary key 3) <security@redhat.com>"
 Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Red Hat Enterprise Linux - BaseOS                16 MB/s |  16 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x3228467C:
 Userid     : "Fedora (epel9) <epel@fedoraproject.org>"
 Fingerprint: FF8A D134 4597 106E CE81 3B91 8A38 72BF 3228 467C
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-9
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.16-5.el9.x86_64                           1/1 
  Preparing        :                                                        1/1 
  Installing       : rust-srpm-macros-17-4.el9.noarch                     1/211 
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  Verifying        : gzip-1.12-1.el9.x86_64                              31/211 
  Verifying        : keyutils-libs-1.6.3-1.el9.x86_64                    32/211 
  Verifying        : libpkgconf-1.7.3-10.el9.x86_64                      33/211 
  Verifying        : pkgconf-1.7.3-10.el9.x86_64                         34/211 
  Verifying        : pkgconf-m4-1.7.3-10.el9.noarch                      35/211 
  Verifying        : pkgconf-pkg-config-1.7.3-10.el9.x86_64              36/211 
  Verifying        : zip-3.0-35.el9.x86_64                               37/211 
  Verifying        : gmp-1:6.2.0-13.el9.x86_64                           38/211 
  Verifying        : libffi-3.4.2-8.el9.x86_64                           39/211 
  Verifying        : lua-libs-5.4.4-4.el9.x86_64                         40/211 
  Verifying        : zlib-1.2.11-40.el9.x86_64                           41/211 
  Verifying        : bash-5.1.8-9.el9.x86_64                             42/211 
  Verifying        : file-5.39-16.el9.x86_64                             43/211 
  Verifying        : file-libs-5.39-16.el9.x86_64                        44/211 
  Verifying        : libacl-2.3.1-4.el9.x86_64                           45/211 
  Verifying        : setup-2.13.7-10.el9.noarch                          46/211 
  Verifying        : libevent-2.1.12-8.el9_4.x86_64                      47/211 
  Verifying        : filesystem-3.16-5.el9.x86_64                        48/211 
  Verifying        : findutils-1:4.8.0-7.el9.x86_64                      49/211 
  Verifying        : gdbm-libs-1:1.23-1.el9.x86_64                       50/211 
  Verifying        : libeconf-0.4.1-4.el9.x86_64                         51/211 
  Verifying        : libgcrypt-1.10.0-11.el9.x86_64                      52/211 
  Verifying        : pcre-8.44-4.el9.x86_64                              53/211 
  Verifying        : pcre2-10.40-6.el9.x86_64                            54/211 
  Verifying        : pcre2-syntax-10.40-6.el9.noarch                     55/211 
  Verifying        : bzip2-1.0.8-10.el9_5.x86_64                         56/211 
  Verifying        : bzip2-libs-1.0.8-10.el9_5.x86_64                    57/211 
  Verifying        : p11-kit-0.25.3-3.el9_5.x86_64                       58/211 
  Verifying        : p11-kit-trust-0.25.3-3.el9_5.x86_64                 59/211 
  Verifying        : alternatives-1.24-2.el9.x86_64                      60/211 
  Verifying        : coreutils-8.32-39.el9.x86_64                        61/211 
  Verifying        : coreutils-common-8.32-39.el9.x86_64                 62/211 
  Verifying        : libselinux-3.6-3.el9.x86_64                         63/211 
  Verifying        : libsemanage-3.6-5.el9_6.x86_64                      64/211 
  Verifying        : libtasn1-4.16.0-9.el9.x86_64                        65/211 
  Verifying        : libtool-ltdl-2.4.6-46.el9.x86_64                    66/211 
  Verifying        : libzstd-1.5.5-1.el9.x86_64                          67/211 
  Verifying        : openldap-2.6.8-4.el9.x86_64                         68/211 
  Verifying        : zstd-1.5.5-1.el9.x86_64                             69/211 
  Verifying        : libdb-5.3.28-57.el9_6.x86_64                        70/211 
  Verifying        : elfutils-0.193-1.el9.x86_64                         71/211 
  Verifying        : elfutils-libs-0.193-1.el9.x86_64                    72/211 
  Verifying        : libgcc-11.5.0-11.el9.x86_64                         73/211 
  Verifying        : ncurses-libs-6.2-12.20210508.el9.x86_64             74/211 
  Verifying        : pam-1.5.1-26.el9_6.x86_64                           75/211 
  Verifying        : rpm-build-libs-4.16.1.3-39.el9.x86_64               76/211 
  Verifying        : unzip-6.0-59.el9.x86_64                             77/211 
  Verifying        : which-2.21-30.el9_6.x86_64                          78/211 
  Verifying        : audit-libs-3.1.5-7.el9.x86_64                       79/211 
  Verifying        : crypto-policies-20250905-1.git377cc42.el9_7.noar    80/211 
  Verifying        : cyrus-sasl-lib-2.1.27-22.el9.x86_64                 81/211 
  Verifying        : elfutils-debuginfod-client-0.193-1.el9.x86_64       82/211 
  Verifying        : elfutils-default-yama-scope-0.193-1.el9.noarch      83/211 
  Verifying        : elfutils-libelf-0.193-1.el9.x86_64                  84/211 
  Verifying        : libcap-2.48-10.el9.x86_64                           85/211 
  Verifying        : libcom_err-1.46.5-8.el9.x86_64                      86/211 
  Verifying        : libgomp-11.5.0-11.el9.x86_64                        87/211 
  Verifying        : libsepol-3.6-3.el9.x86_64                           88/211 
  Verifying        : libstdc++-11.5.0-11.el9.x86_64                      89/211 
  Verifying        : ncurses-6.2-12.20210508.el9.x86_64                  90/211 
  Verifying        : ncurses-base-6.2-12.20210508.el9.noarch             91/211 
  Verifying        : openssl-fips-provider-3.0.7-8.el9.x86_64            92/211 
  Verifying        : openssl-fips-provider-so-3.0.7-8.el9.x86_64         93/211 
  Verifying        : rpm-4.16.1.3-39.el9.x86_64                          94/211 
  Verifying        : rpm-libs-4.16.1.3-39.el9.x86_64                     95/211 
  Verifying        : shadow-utils-2:4.9-15.el9.x86_64                    96/211 
  Verifying        : redhat-release-9.7-0.7.el9.x86_64                   97/211 
  Verifying        : sqlite-libs-3.34.1-9.el9_7.x86_64                   98/211 
  Verifying        : ca-certificates-2025.2.80_v9.0.305-91.el9.noarch    99/211 
  Verifying        : libxml2-2.9.13-14.el9_7.x86_64                     100/211 
  Verifying        : libssh-0.10.4-17.el9_7.x86_64                      101/211 
  Verifying        : libssh-config-0.10.4-17.el9_7.noarch               102/211 
  Verifying        : binutils-2.35.2-67.el9_7.1.x86_64                  103/211 
  Verifying        : binutils-gold-2.35.2-67.el9_7.1.x86_64             104/211 
  Verifying        : tar-2:1.34-9.el9_7.x86_64                          105/211 
  Verifying        : curl-7.76.1-35.el9_7.3.x86_64                      106/211 
  Verifying        : libcurl-7.76.1-35.el9_7.3.x86_64                   107/211 
  Verifying        : openssl-1:3.5.1-7.el9_7.x86_64                     108/211 
  Verifying        : openssl-libs-1:3.5.1-7.el9_7.x86_64                109/211 
  Verifying        : libblkid-2.37.4-21.el9_7.x86_64                    110/211 
  Verifying        : libfdisk-2.37.4-21.el9_7.x86_64                    111/211 
  Verifying        : libmount-2.37.4-21.el9_7.x86_64                    112/211 
  Verifying        : libsmartcols-2.37.4-21.el9_7.x86_64                113/211 
  Verifying        : libuuid-2.37.4-21.el9_7.x86_64                     114/211 
  Verifying        : util-linux-2.37.4-21.el9_7.x86_64                  115/211 
  Verifying        : util-linux-core-2.37.4-21.el9_7.x86_64             116/211 
  Verifying        : libbrotli-1.0.9-9.el9_7.x86_64                     117/211 
  Verifying        : glibc-2.34-231.el9_7.10.x86_64                     118/211 
  Verifying        : glibc-common-2.34-231.el9_7.10.x86_64              119/211 
  Verifying        : glibc-gconv-extra-2.34-231.el9_7.10.x86_64         120/211 
  Verifying        : glibc-minimal-langpack-2.34-231.el9_7.10.x86_64    121/211 
  Verifying        : tzdata-2026a-1.el9.noarch                          122/211 
  Verifying        : systemd-libs-252-55.el9_7.8.x86_64                 123/211 
  Verifying        : libnghttp2-1.43.0-6.el9_7.1.x86_64                 124/211 
  Verifying        : libarchive-3.5.3-9.el9_7.x86_64                    125/211 
  Verifying        : krb5-libs-1.21.1-9.el9_7.x86_64                    126/211 
  Verifying        : ghc-srpm-macros-1.5.0-6.el9.noarch                 127/211 
  Verifying        : lua-srpm-macros-1-6.el9.noarch                     128/211 
  Verifying        : perl-Data-Dumper-2.174-462.el9.x86_64              129/211 
  Verifying        : perl-Digest-MD5-2.58-4.el9.x86_64                  130/211 
  Verifying        : perl-Encode-4:3.08-462.el9.x86_64                  131/211 
  Verifying        : perl-Mozilla-CA-20200520-6.el9.noarch              132/211 
  Verifying        : perl-Pod-Simple-1:3.42-4.el9.noarch                133/211 
  Verifying        : perl-Term-Cap-1.17-460.el9.noarch                  134/211 
  Verifying        : perl-Time-Local-2:1.300-7.el9.noarch               135/211 
  Verifying        : rust-srpm-macros-17-4.el9.noarch                   136/211 
  Verifying        : perl-Pod-Escapes-1:1.07-460.el9.noarch             137/211 
  Verifying        : perl-Storable-1:3.21-460.el9.x86_64                138/211 
  Verifying        : perl-podlators-1:4.14-460.el9.noarch               139/211 
  Verifying        : perl-Exporter-5.74-461.el9.noarch                  140/211 
  Verifying        : perl-File-Temp-1:0.231.100-4.el9.noarch            141/211 
  Verifying        : perl-Getopt-Long-1:2.52-4.el9.noarch               142/211 
  Verifying        : perl-MIME-Base64-3.16-4.el9.x86_64                 143/211 
  Verifying        : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch       144/211 
  Verifying        : perl-parent-1:0.238-460.el9.noarch                 145/211 
  Verifying        : perl-srpm-macros-1-41.el9.noarch                   146/211 
  Verifying        : openblas-srpm-macros-2-11.el9.noarch               147/211 
  Verifying        : perl-Digest-1.19-4.el9.noarch                      148/211 
  Verifying        : perl-File-Path-2.18-4.el9.noarch                   149/211 
  Verifying        : perl-IO-Socket-IP-0.41-5.el9.noarch                150/211 
  Verifying        : perl-Pod-Usage-4:2.01-4.el9.noarch                 151/211 
  Verifying        : perl-Socket-4:2.031-4.el9.x86_64                   152/211 
  Verifying        : perl-Term-ANSIColor-5.01-461.el9.noarch            153/211 
  Verifying        : perl-Text-ParseWords-3.30-460.el9.noarch           154/211 
  Verifying        : perl-URI-5.09-3.el9.noarch                         155/211 
  Verifying        : perl-constant-1.33-461.el9.noarch                  156/211 
  Verifying        : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch           157/211 
  Verifying        : ocaml-srpm-macros-6-6.el9.noarch                   158/211 
  Verifying        : patch-2.7.6-16.el9.x86_64                          159/211 
  Verifying        : perl-Pod-Perldoc-3.28.01-461.el9.noarch            160/211 
  Verifying        : perl-libnet-3.13-4.el9.noarch                      161/211 
  Verifying        : perl-Carp-1.50-460.el9.noarch                      162/211 
  Verifying        : perl-PathTools-3.78-461.el9.x86_64                 163/211 
  Verifying        : qt5-srpm-macros-5.15.9-1.el9.noarch                164/211 
  Verifying        : perl-HTTP-Tiny-0.076-462.el9.noarch                165/211 
  Verifying        : python-srpm-macros-3.9-54.el9.noarch               166/211 
  Verifying        : perl-IO-Socket-SSL-2.073-2.el9.noarch              167/211 
  Verifying        : perl-Scalar-List-Utils-4:1.56-462.el9.x86_64       168/211 
  Verifying        : pyproject-srpm-macros-1.16.2-1.el9.noarch          169/211 
  Verifying        : perl-AutoLoader-5.74-481.1.el9_6.noarch            170/211 
  Verifying        : perl-B-1.80-481.1.el9_6.x86_64                     171/211 
  Verifying        : perl-Class-Struct-0.66-481.1.el9_6.noarch          172/211 
  Verifying        : perl-Errno-1.30-481.1.el9_6.x86_64                 173/211 
  Verifying        : perl-Fcntl-1.13-481.1.el9_6.x86_64                 174/211 
  Verifying        : perl-File-Basename-2.85-481.1.el9_6.noarch         175/211 
  Verifying        : perl-File-stat-1.09-481.1.el9_6.noarch             176/211 
  Verifying        : perl-FileHandle-2.03-481.1.el9_6.noarch            177/211 
  Verifying        : perl-Getopt-Std-1.12-481.1.el9_6.noarch            178/211 
  Verifying        : perl-IO-1.43-481.1.el9_6.x86_64                    179/211 
  Verifying        : perl-IPC-Open3-1.21-481.1.el9_6.noarch             180/211 
  Verifying        : perl-POSIX-1.94-481.1.el9_6.x86_64                 181/211 
  Verifying        : perl-SelectSaver-1.02-481.1.el9_6.noarch           182/211 
  Verifying        : perl-Symbol-1.08-481.1.el9_6.noarch                183/211 
  Verifying        : perl-base-2.27-481.1.el9_6.noarch                  184/211 
  Verifying        : perl-if-0.60.800-481.1.el9_6.noarch                185/211 
  Verifying        : perl-interpreter-4:5.32.1-481.1.el9_6.x86_64       186/211 
  Verifying        : perl-libs-4:5.32.1-481.1.el9_6.x86_64              187/211 
  Verifying        : perl-mro-1.23-481.1.el9_6.x86_64                   188/211 
  Verifying        : perl-overload-1.31-481.1.el9_6.noarch              189/211 
  Verifying        : perl-overloading-0.02-481.1.el9_6.noarch           190/211 
  Verifying        : perl-subs-1.03-481.1.el9_6.noarch                  191/211 
  Verifying        : perl-vars-1.05-481.1.el9_6.noarch                  192/211 
  Verifying        : dwz-0.16-1.el9.x86_64                              193/211 
  Verifying        : debugedit-5.0-11.el9.x86_64                        194/211 
  Verifying        : efi-srpm-macros-6-4.el9.noarch                     195/211 
  Verifying        : gdb-minimal-16.3-2.el9.x86_64                      196/211 
  Verifying        : kernel-srpm-macros-1.0-14.el9.noarch               197/211 
  Verifying        : perl-Net-SSLeay-1.94-3.el9.x86_64                  198/211 
  Verifying        : redhat-rpm-config-210-1.el9.noarch                 199/211 
  Verifying        : rpm-build-4.16.1.3-39.el9.x86_64                   200/211 
  Verifying        : go-srpm-macros-3.6.0-14.el9_7.noarch               201/211 
  Verifying        : R-srpm-macros-1.3.7-1.el9.noarch                   202/211 
  Verifying        : ansible-srpm-macros-1-16.el9.noarch                203/211 
  Verifying        : epel-rpm-macros-9-18.el9.noarch                    204/211 
  Verifying        : forge-srpm-macros-0.4.0-1.el9.noarch               205/211 
  Verifying        : fpc-srpm-macros-1.3-7.el9.noarch                   206/211 
  Verifying        : ghc-srpm-macros-epel-1.9.1-1.el9.noarch            207/211 
  Verifying        : go-srpm-macros-epel-3.8.0-1.el9.noarch             208/211 
  Verifying        : qt6-srpm-macros-6.6.2-1.el9.noarch                 209/211 
  Verifying        : rpmautospec-rpm-macros-0.8.4-1.el9.noarch          210/211 
  Verifying        : rust-srpm-macros-epel-26.3-1.el9.noarch            211/211 
Installed products updated.

Installed:
  R-srpm-macros-1.3.7-1.el9.noarch                                              
  alternatives-1.24-2.el9.x86_64                                                
  ansible-srpm-macros-1-16.el9.noarch                                           
  audit-libs-3.1.5-7.el9.x86_64                                                 
  basesystem-11-13.el9.noarch                                                   
  bash-5.1.8-9.el9.x86_64                                                       
  binutils-2.35.2-67.el9_7.1.x86_64                                             
  binutils-gold-2.35.2-67.el9_7.1.x86_64                                        
  bzip2-1.0.8-10.el9_5.x86_64                                                   
  bzip2-libs-1.0.8-10.el9_5.x86_64                                              
  ca-certificates-2025.2.80_v9.0.305-91.el9.noarch                              
  coreutils-8.32-39.el9.x86_64                                                  
  coreutils-common-8.32-39.el9.x86_64                                           
  cpio-2.13-16.el9.x86_64                                                       
  cracklib-2.9.6-27.el9.x86_64                                                  
  cracklib-dicts-2.9.6-27.el9.x86_64                                            
  crypto-policies-20250905-1.git377cc42.el9_7.noarch                            
  curl-7.76.1-35.el9_7.3.x86_64                                                 
  cyrus-sasl-lib-2.1.27-22.el9.x86_64                                           
  debugedit-5.0-11.el9.x86_64                                                   
  diffutils-3.7-12.el9.x86_64                                                   
  dwz-0.16-1.el9.x86_64                                                         
  ed-1.14.2-12.el9.x86_64                                                       
  efi-srpm-macros-6-4.el9.noarch                                                
  elfutils-0.193-1.el9.x86_64                                                   
  elfutils-debuginfod-client-0.193-1.el9.x86_64                                 
  elfutils-default-yama-scope-0.193-1.el9.noarch                                
  elfutils-libelf-0.193-1.el9.x86_64                                            
  elfutils-libs-0.193-1.el9.x86_64                                              
  epel-rpm-macros-9-18.el9.noarch                                               
  file-5.39-16.el9.x86_64                                                       
  file-libs-5.39-16.el9.x86_64                                                  
  filesystem-3.16-5.el9.x86_64                                                  
  findutils-1:4.8.0-7.el9.x86_64                                                
  fonts-srpm-macros-1:2.0.5-7.el9.1.noarch                                      
  forge-srpm-macros-0.4.0-1.el9.noarch                                          
  fpc-srpm-macros-1.3-7.el9.noarch                                              
  gawk-5.1.0-6.el9.x86_64                                                       
  gdb-minimal-16.3-2.el9.x86_64                                                 
  gdbm-libs-1:1.23-1.el9.x86_64                                                 
  ghc-srpm-macros-1.5.0-6.el9.noarch                                            
  ghc-srpm-macros-epel-1.9.1-1.el9.noarch                                       
  glibc-2.34-231.el9_7.10.x86_64                                                
  glibc-common-2.34-231.el9_7.10.x86_64                                         
  glibc-gconv-extra-2.34-231.el9_7.10.x86_64                                    
  glibc-minimal-langpack-2.34-231.el9_7.10.x86_64                               
  gmp-1:6.2.0-13.el9.x86_64                                                     
  go-srpm-macros-3.6.0-14.el9_7.noarch                                          
  go-srpm-macros-epel-3.8.0-1.el9.noarch                                        
  grep-3.6-5.el9.x86_64                                                         
  groff-base-1.22.4-10.el9.x86_64                                               
  gzip-1.12-1.el9.x86_64                                                        
  info-6.7-15.el9.x86_64                                                        
  json-c-0.14-11.el9.x86_64                                                     
  kernel-srpm-macros-1.0-14.el9.noarch                                          
  keyutils-libs-1.6.3-1.el9.x86_64                                              
  krb5-libs-1.21.1-9.el9_7.x86_64                                               
  libacl-2.3.1-4.el9.x86_64                                                     
  libarchive-3.5.3-9.el9_7.x86_64                                               
  libattr-2.5.1-3.el9.x86_64                                                    
  libblkid-2.37.4-21.el9_7.x86_64                                               
  libbrotli-1.0.9-9.el9_7.x86_64                                                
  libcap-2.48-10.el9.x86_64                                                     
  libcap-ng-0.8.2-7.el9.x86_64                                                  
  libcom_err-1.46.5-8.el9.x86_64                                                
  libcurl-7.76.1-35.el9_7.3.x86_64                                              
  libdb-5.3.28-57.el9_6.x86_64                                                  
  libeconf-0.4.1-4.el9.x86_64                                                   
  libevent-2.1.12-8.el9_4.x86_64                                                
  libfdisk-2.37.4-21.el9_7.x86_64                                               
  libffi-3.4.2-8.el9.x86_64                                                     
  libgcc-11.5.0-11.el9.x86_64                                                   
  libgcrypt-1.10.0-11.el9.x86_64                                                
  libgomp-11.5.0-11.el9.x86_64                                                  
  libgpg-error-1.42-5.el9.x86_64                                                
  libidn2-2.3.0-7.el9.x86_64                                                    
  libmount-2.37.4-21.el9_7.x86_64                                               
  libnghttp2-1.43.0-6.el9_7.1.x86_64                                            
  libpkgconf-1.7.3-10.el9.x86_64                                                
  libpsl-0.21.1-5.el9.x86_64                                                    
  libpwquality-1.4.4-8.el9.x86_64                                               
  libselinux-3.6-3.el9.x86_64                                                   
  libsemanage-3.6-5.el9_6.x86_64                                                
  libsepol-3.6-3.el9.x86_64                                                     
  libsigsegv-2.13-4.el9.x86_64                                                  
  libsmartcols-2.37.4-21.el9_7.x86_64                                           
  libssh-0.10.4-17.el9_7.x86_64                                                 
  libssh-config-0.10.4-17.el9_7.noarch                                          
  libstdc++-11.5.0-11.el9.x86_64                                                
  libtasn1-4.16.0-9.el9.x86_64                                                  
  libtool-ltdl-2.4.6-46.el9.x86_64                                              
  libunistring-0.9.10-15.el9.x86_64                                             
  libutempter-1.2.1-6.el9.x86_64                                                
  libuuid-2.37.4-21.el9_7.x86_64                                                
  libverto-0.3.2-3.el9.x86_64                                                   
  libxcrypt-4.4.18-3.el9.x86_64                                                 
  libxml2-2.9.13-14.el9_7.x86_64                                                
  libzstd-1.5.5-1.el9.x86_64                                                    
  lua-libs-5.4.4-4.el9.x86_64                                                   
  lua-srpm-macros-1-6.el9.noarch                                                
  lz4-libs-1.9.3-5.el9.x86_64                                                   
  mpfr-4.1.0-7.el9.x86_64                                                       
  ncurses-6.2-12.20210508.el9.x86_64                                            
  ncurses-base-6.2-12.20210508.el9.noarch                                       
  ncurses-libs-6.2-12.20210508.el9.x86_64                                       
  ocaml-srpm-macros-6-6.el9.noarch                                              
  openblas-srpm-macros-2-11.el9.noarch                                          
  openldap-2.6.8-4.el9.x86_64                                                   
  openssl-1:3.5.1-7.el9_7.x86_64                                                
  openssl-fips-provider-3.0.7-8.el9.x86_64                                      
  openssl-fips-provider-so-3.0.7-8.el9.x86_64                                   
  openssl-libs-1:3.5.1-7.el9_7.x86_64                                           
  p11-kit-0.25.3-3.el9_5.x86_64                                                 
  p11-kit-trust-0.25.3-3.el9_5.x86_64                                           
  pam-1.5.1-26.el9_6.x86_64                                                     
  patch-2.7.6-16.el9.x86_64                                                     
  pcre-8.44-4.el9.x86_64                                                        
  pcre2-10.40-6.el9.x86_64                                                      
  pcre2-syntax-10.40-6.el9.noarch                                               
  perl-AutoLoader-5.74-481.1.el9_6.noarch                                       
  perl-B-1.80-481.1.el9_6.x86_64                                                
  perl-Carp-1.50-460.el9.noarch                                                 
  perl-Class-Struct-0.66-481.1.el9_6.noarch                                     
  perl-Data-Dumper-2.174-462.el9.x86_64                                         
  perl-Digest-1.19-4.el9.noarch                                                 
  perl-Digest-MD5-2.58-4.el9.x86_64                                             
  perl-Encode-4:3.08-462.el9.x86_64                                             
  perl-Errno-1.30-481.1.el9_6.x86_64                                            
  perl-Exporter-5.74-461.el9.noarch                                             
  perl-Fcntl-1.13-481.1.el9_6.x86_64                                            
  perl-File-Basename-2.85-481.1.el9_6.noarch                                    
  perl-File-Path-2.18-4.el9.noarch                                              
  perl-File-Temp-1:0.231.100-4.el9.noarch                                       
  perl-File-stat-1.09-481.1.el9_6.noarch                                        
  perl-FileHandle-2.03-481.1.el9_6.noarch                                       
  perl-Getopt-Long-1:2.52-4.el9.noarch                                          
  perl-Getopt-Std-1.12-481.1.el9_6.noarch                                       
  perl-HTTP-Tiny-0.076-462.el9.noarch                                           
  perl-IO-1.43-481.1.el9_6.x86_64                                               
  perl-IO-Socket-IP-0.41-5.el9.noarch                                           
  perl-IO-Socket-SSL-2.073-2.el9.noarch                                         
  perl-IPC-Open3-1.21-481.1.el9_6.noarch                                        
  perl-MIME-Base64-3.16-4.el9.x86_64                                            
  perl-Mozilla-CA-20200520-6.el9.noarch                                         
  perl-Net-SSLeay-1.94-3.el9.x86_64                                             
  perl-POSIX-1.94-481.1.el9_6.x86_64                                            
  perl-PathTools-3.78-461.el9.x86_64                                            
  perl-Pod-Escapes-1:1.07-460.el9.noarch                                        
  perl-Pod-Perldoc-3.28.01-461.el9.noarch                                       
  perl-Pod-Simple-1:3.42-4.el9.noarch                                           
  perl-Pod-Usage-4:2.01-4.el9.noarch                                            
  perl-Scalar-List-Utils-4:1.56-462.el9.x86_64                                  
  perl-SelectSaver-1.02-481.1.el9_6.noarch                                      
  perl-Socket-4:2.031-4.el9.x86_64                                              
  perl-Storable-1:3.21-460.el9.x86_64                                           
  perl-Symbol-1.08-481.1.el9_6.noarch                                           
  perl-Term-ANSIColor-5.01-461.el9.noarch                                       
  perl-Term-Cap-1.17-460.el9.noarch                                             
  perl-Text-ParseWords-3.30-460.el9.noarch                                      
  perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch                                  
  perl-Time-Local-2:1.300-7.el9.noarch                                          
  perl-URI-5.09-3.el9.noarch                                                    
  perl-base-2.27-481.1.el9_6.noarch                                             
  perl-constant-1.33-461.el9.noarch                                             
  perl-if-0.60.800-481.1.el9_6.noarch                                           
  perl-interpreter-4:5.32.1-481.1.el9_6.x86_64                                  
  perl-libnet-3.13-4.el9.noarch                                                 
  perl-libs-4:5.32.1-481.1.el9_6.x86_64                                         
  perl-mro-1.23-481.1.el9_6.x86_64                                              
  perl-overload-1.31-481.1.el9_6.noarch                                         
  perl-overloading-0.02-481.1.el9_6.noarch                                      
  perl-parent-1:0.238-460.el9.noarch                                            
  perl-podlators-1:4.14-460.el9.noarch                                          
  perl-srpm-macros-1-41.el9.noarch                                              
  perl-subs-1.03-481.1.el9_6.noarch                                             
  perl-vars-1.05-481.1.el9_6.noarch                                             
  pkgconf-1.7.3-10.el9.x86_64                                                   
  pkgconf-m4-1.7.3-10.el9.noarch                                                
  pkgconf-pkg-config-1.7.3-10.el9.x86_64                                        
  popt-1.18-8.el9.x86_64                                                        
  publicsuffix-list-dafsa-20210518-3.el9.noarch                                 
  pyproject-srpm-macros-1.16.2-1.el9.noarch                                     
  python-srpm-macros-3.9-54.el9.noarch                                          
  qt5-srpm-macros-5.15.9-1.el9.noarch                                           
  qt6-srpm-macros-6.6.2-1.el9.noarch                                            
  readline-8.1-4.el9.x86_64                                                     
  redhat-release-9.7-0.7.el9.x86_64                                             
  redhat-rpm-config-210-1.el9.noarch                                            
  rpm-4.16.1.3-39.el9.x86_64                                                    
  rpm-build-4.16.1.3-39.el9.x86_64                                              
  rpm-build-libs-4.16.1.3-39.el9.x86_64                                         
  rpm-libs-4.16.1.3-39.el9.x86_64                                               
  rpmautospec-rpm-macros-0.8.4-1.el9.noarch                                     
  rust-srpm-macros-17-4.el9.noarch                                              
  rust-srpm-macros-epel-26.3-1.el9.noarch                                       
  sed-4.8-9.el9.x86_64                                                          
  setup-2.13.7-10.el9.noarch                                                    
  shadow-utils-2:4.9-15.el9.x86_64                                              
  sqlite-libs-3.34.1-9.el9_7.x86_64                                             
  systemd-libs-252-55.el9_7.8.x86_64                                            
  tar-2:1.34-9.el9_7.x86_64                                                     
  tzdata-2026a-1.el9.noarch                                                     
  unzip-6.0-59.el9.x86_64                                                       
  util-linux-2.37.4-21.el9_7.x86_64                                             
  util-linux-core-2.37.4-21.el9_7.x86_64                                        
  which-2.21-30.el9_6.x86_64                                                    
  xz-5.2.5-8.el9_0.x86_64                                                       
  xz-libs-5.2.5-8.el9_0.x86_64                                                  
  zip-3.0-35.el9.x86_64                                                         
  zlib-1.2.11-40.el9.x86_64                                                     
  zstd-1.5.5-1.el9.x86_64                                                       

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-1.el9.noarch
alternatives-1.24-2.el9.x86_64
ansible-srpm-macros-1-16.el9.noarch
audit-libs-3.1.5-7.el9.x86_64
basesystem-11-13.el9.noarch
bash-5.1.8-9.el9.x86_64
binutils-2.35.2-67.el9_7.1.x86_64
binutils-gold-2.35.2-67.el9_7.1.x86_64
bzip2-1.0.8-10.el9_5.x86_64
bzip2-libs-1.0.8-10.el9_5.x86_64
ca-certificates-2025.2.80_v9.0.305-91.el9.noarch
coreutils-8.32-39.el9.x86_64
coreutils-common-8.32-39.el9.x86_64
cpio-2.13-16.el9.x86_64
cracklib-2.9.6-27.el9.x86_64
cracklib-dicts-2.9.6-27.el9.x86_64
crypto-policies-20250905-1.git377cc42.el9_7.noarch
curl-7.76.1-35.el9_7.3.x86_64
cyrus-sasl-lib-2.1.27-22.el9.x86_64
debugedit-5.0-11.el9.x86_64
diffutils-3.7-12.el9.x86_64
dwz-0.16-1.el9.x86_64
ed-1.14.2-12.el9.x86_64
efi-srpm-macros-6-4.el9.noarch
elfutils-0.193-1.el9.x86_64
elfutils-debuginfod-client-0.193-1.el9.x86_64
elfutils-default-yama-scope-0.193-1.el9.noarch
elfutils-libelf-0.193-1.el9.x86_64
elfutils-libs-0.193-1.el9.x86_64
epel-rpm-macros-9-18.el9.noarch
file-5.39-16.el9.x86_64
file-libs-5.39-16.el9.x86_64
filesystem-3.16-5.el9.x86_64
findutils-4.8.0-7.el9.x86_64
fonts-srpm-macros-2.0.5-7.el9.1.noarch
forge-srpm-macros-0.4.0-1.el9.noarch
fpc-srpm-macros-1.3-7.el9.noarch
gawk-5.1.0-6.el9.x86_64
gdb-minimal-16.3-2.el9.x86_64
gdbm-libs-1.23-1.el9.x86_64
ghc-srpm-macros-1.5.0-6.el9.noarch
ghc-srpm-macros-epel-1.9.1-1.el9.noarch
glibc-2.34-231.el9_7.10.x86_64
glibc-common-2.34-231.el9_7.10.x86_64
glibc-gconv-extra-2.34-231.el9_7.10.x86_64
glibc-minimal-langpack-2.34-231.el9_7.10.x86_64
gmp-6.2.0-13.el9.x86_64
go-srpm-macros-3.6.0-14.el9_7.noarch
go-srpm-macros-epel-3.8.0-1.el9.noarch
gpg-pubkey-3228467c-613798eb
gpg-pubkey-5a6340b3-6229229e
gpg-pubkey-fd431d51-4ae0493b
grep-3.6-5.el9.x86_64
groff-base-1.22.4-10.el9.x86_64
gzip-1.12-1.el9.x86_64
info-6.7-15.el9.x86_64
json-c-0.14-11.el9.x86_64
kernel-srpm-macros-1.0-14.el9.noarch
keyutils-libs-1.6.3-1.el9.x86_64
krb5-libs-1.21.1-9.el9_7.x86_64
libacl-2.3.1-4.el9.x86_64
libarchive-3.5.3-9.el9_7.x86_64
libattr-2.5.1-3.el9.x86_64
libblkid-2.37.4-21.el9_7.x86_64
libbrotli-1.0.9-9.el9_7.x86_64
libcap-2.48-10.el9.x86_64
libcap-ng-0.8.2-7.el9.x86_64
libcom_err-1.46.5-8.el9.x86_64
libcurl-7.76.1-35.el9_7.3.x86_64
libdb-5.3.28-57.el9_6.x86_64
libeconf-0.4.1-4.el9.x86_64
libevent-2.1.12-8.el9_4.x86_64
libfdisk-2.37.4-21.el9_7.x86_64
libffi-3.4.2-8.el9.x86_64
libgcc-11.5.0-11.el9.x86_64
libgcrypt-1.10.0-11.el9.x86_64
libgomp-11.5.0-11.el9.x86_64
libgpg-error-1.42-5.el9.x86_64
libidn2-2.3.0-7.el9.x86_64
libmount-2.37.4-21.el9_7.x86_64
libnghttp2-1.43.0-6.el9_7.1.x86_64
libpkgconf-1.7.3-10.el9.x86_64
libpsl-0.21.1-5.el9.x86_64
libpwquality-1.4.4-8.el9.x86_64
libselinux-3.6-3.el9.x86_64
libsemanage-3.6-5.el9_6.x86_64
libsepol-3.6-3.el9.x86_64
libsigsegv-2.13-4.el9.x86_64
libsmartcols-2.37.4-21.el9_7.x86_64
libssh-0.10.4-17.el9_7.x86_64
libssh-config-0.10.4-17.el9_7.noarch
libstdc++-11.5.0-11.el9.x86_64
libtasn1-4.16.0-9.el9.x86_64
libtool-ltdl-2.4.6-46.el9.x86_64
libunistring-0.9.10-15.el9.x86_64
libutempter-1.2.1-6.el9.x86_64
libuuid-2.37.4-21.el9_7.x86_64
libverto-0.3.2-3.el9.x86_64
libxcrypt-4.4.18-3.el9.x86_64
libxml2-2.9.13-14.el9_7.x86_64
libzstd-1.5.5-1.el9.x86_64
lua-libs-5.4.4-4.el9.x86_64
lua-srpm-macros-1-6.el9.noarch
lz4-libs-1.9.3-5.el9.x86_64
mpfr-4.1.0-7.el9.x86_64
ncurses-6.2-12.20210508.el9.x86_64
ncurses-base-6.2-12.20210508.el9.noarch
ncurses-libs-6.2-12.20210508.el9.x86_64
ocaml-srpm-macros-6-6.el9.noarch
openblas-srpm-macros-2-11.el9.noarch
openldap-2.6.8-4.el9.x86_64
openssl-3.5.1-7.el9_7.x86_64
openssl-fips-provider-3.0.7-8.el9.x86_64
openssl-fips-provider-so-3.0.7-8.el9.x86_64
openssl-libs-3.5.1-7.el9_7.x86_64
p11-kit-0.25.3-3.el9_5.x86_64
p11-kit-trust-0.25.3-3.el9_5.x86_64
pam-1.5.1-26.el9_6.x86_64
patch-2.7.6-16.el9.x86_64
pcre-8.44-4.el9.x86_64
pcre2-10.40-6.el9.x86_64
pcre2-syntax-10.40-6.el9.noarch
perl-AutoLoader-5.74-481.1.el9_6.noarch
perl-B-1.80-481.1.el9_6.x86_64
perl-Carp-1.50-460.el9.noarch
perl-Class-Struct-0.66-481.1.el9_6.noarch
perl-Data-Dumper-2.174-462.el9.x86_64
perl-Digest-1.19-4.el9.noarch
perl-Digest-MD5-2.58-4.el9.x86_64
perl-Encode-3.08-462.el9.x86_64
perl-Errno-1.30-481.1.el9_6.x86_64
perl-Exporter-5.74-461.el9.noarch
perl-Fcntl-1.13-481.1.el9_6.x86_64
perl-File-Basename-2.85-481.1.el9_6.noarch
perl-File-Path-2.18-4.el9.noarch
perl-File-Temp-0.231.100-4.el9.noarch
perl-File-stat-1.09-481.1.el9_6.noarch
perl-FileHandle-2.03-481.1.el9_6.noarch
perl-Getopt-Long-2.52-4.el9.noarch
perl-Getopt-Std-1.12-481.1.el9_6.noarch
perl-HTTP-Tiny-0.076-462.el9.noarch
perl-IO-1.43-481.1.el9_6.x86_64
perl-IO-Socket-IP-0.41-5.el9.noarch
perl-IO-Socket-SSL-2.073-2.el9.noarch
perl-IPC-Open3-1.21-481.1.el9_6.noarch
perl-MIME-Base64-3.16-4.el9.x86_64
perl-Mozilla-CA-20200520-6.el9.noarch
perl-Net-SSLeay-1.94-3.el9.x86_64
perl-POSIX-1.94-481.1.el9_6.x86_64
perl-PathTools-3.78-461.el9.x86_64
perl-Pod-Escapes-1.07-460.el9.noarch
perl-Pod-Perldoc-3.28.01-461.el9.noarch
perl-Pod-Simple-3.42-4.el9.noarch
perl-Pod-Usage-2.01-4.el9.noarch
perl-Scalar-List-Utils-1.56-462.el9.x86_64
perl-SelectSaver-1.02-481.1.el9_6.noarch
perl-Socket-2.031-4.el9.x86_64
perl-Storable-3.21-460.el9.x86_64
perl-Symbol-1.08-481.1.el9_6.noarch
perl-Term-ANSIColor-5.01-461.el9.noarch
perl-Term-Cap-1.17-460.el9.noarch
perl-Text-ParseWords-3.30-460.el9.noarch
perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch
perl-Time-Local-1.300-7.el9.noarch
perl-URI-5.09-3.el9.noarch
perl-base-2.27-481.1.el9_6.noarch
perl-constant-1.33-461.el9.noarch
perl-if-0.60.800-481.1.el9_6.noarch
perl-interpreter-5.32.1-481.1.el9_6.x86_64
perl-libnet-3.13-4.el9.noarch
perl-libs-5.32.1-481.1.el9_6.x86_64
perl-mro-1.23-481.1.el9_6.x86_64
perl-overload-1.31-481.1.el9_6.noarch
perl-overloading-0.02-481.1.el9_6.noarch
perl-parent-0.238-460.el9.noarch
perl-podlators-4.14-460.el9.noarch
perl-srpm-macros-1-41.el9.noarch
perl-subs-1.03-481.1.el9_6.noarch
perl-vars-1.05-481.1.el9_6.noarch
pkgconf-1.7.3-10.el9.x86_64
pkgconf-m4-1.7.3-10.el9.noarch
pkgconf-pkg-config-1.7.3-10.el9.x86_64
popt-1.18-8.el9.x86_64
publicsuffix-list-dafsa-20210518-3.el9.noarch
pyproject-srpm-macros-1.16.2-1.el9.noarch
python-srpm-macros-3.9-54.el9.noarch
qt5-srpm-macros-5.15.9-1.el9.noarch
qt6-srpm-macros-6.6.2-1.el9.noarch
readline-8.1-4.el9.x86_64
redhat-release-9.7-0.7.el9.x86_64
redhat-rpm-config-210-1.el9.noarch
rpm-4.16.1.3-39.el9.x86_64
rpm-build-4.16.1.3-39.el9.x86_64
rpm-build-libs-4.16.1.3-39.el9.x86_64
rpm-libs-4.16.1.3-39.el9.x86_64
rpmautospec-rpm-macros-0.8.4-1.el9.noarch
rust-srpm-macros-17-4.el9.noarch
rust-srpm-macros-epel-26.3-1.el9.noarch
sed-4.8-9.el9.x86_64
setup-2.13.7-10.el9.noarch
shadow-utils-4.9-15.el9.x86_64
sqlite-libs-3.34.1-9.el9_7.x86_64
systemd-libs-252-55.el9_7.8.x86_64
tar-1.34-9.el9_7.x86_64
tzdata-2026a-1.el9.noarch
unzip-6.0-59.el9.x86_64
util-linux-2.37.4-21.el9_7.x86_64
util-linux-core-2.37.4-21.el9_7.x86_64
which-2.21-30.el9_6.x86_64
xz-5.2.5-8.el9_0.x86_64
xz-libs-5.2.5-8.el9_0.x86_64
zip-3.0-35.el9.x86_64
zlib-1.2.11-40.el9.x86_64
zstd-1.5.5-1.el9.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674000000
Wrote: /builddir/build/SRPMS/apbs-3.0.0-17.el9.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root/var/log/dnf.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-z7_yda48/apbs/apbs.spec) Config(child) 0 minutes 13 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/apbs-3.0.0-17.el9.src.rpm)  Config(rhel+epel-9-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1777471069.527430/root.
INFO: reusing tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1777471069.527430/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.16.1.3-39.el9.x86_64
  python3-dnf-4.14.0-31.el9.noarch
  python3-dnf-plugins-core-4.3.0-24.el9_7.noarch
  yum-4.14.0-31.el9.noarch
Finish: chroot init
Start: build phase for apbs-3.0.0-17.el9.src.rpm
Start: build setup for apbs-3.0.0-17.el9.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674000000
Wrote: /builddir/build/SRPMS/apbs-3.0.0-17.el9.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  14 kB/s | 1.5 kB     00:00    
Red Hat Enterprise Linux - BaseOS               100 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             85 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil 115 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  330 kB/s |  24 kB     00:00    
Dependencies resolved.
================================================================================================
 Package                                 Arch    Version                Repository          Size
================================================================================================
Installing:
 chrpath                                 x86_64  0.16-17.el9            baseos              33 k
 cmake                                   x86_64  3.26.5-3.el9_7         appstream          8.7 M
 doxygen                                 x86_64  1:1.9.1-12.el9_5       codeready-builder  4.2 M
 gcc-c++                                 x86_64  11.5.0-11.el9          appstream           13 M
 graphviz                                x86_64  2.44.0-26.el9          appstream          3.3 M
 make                                    x86_64  1:4.3-8.el9            baseos             541 k
 maloc-devel                             x86_64  1.5-35.el9             copr_base          1.3 M
 python3-devel                           x86_64  3.9.25-3.el9_7.3       appstream          252 k
 python3-numpy                           x86_64  1:1.23.5-2.el9_7       appstream          6.1 M
 python3-sphinx                          noarch  1:3.4.3-8.el9          codeready-builder  2.3 M
 swig                                    x86_64  4.0.2-8.el9            codeready-builder  1.6 M
 zlib-devel                              x86_64  1.2.11-40.el9          appstream           47 k
Installing dependencies:
 adobe-mappings-cmap                     noarch  20171205-12.el9        appstream          1.9 M
 adobe-mappings-cmap-deprecated          noarch  20171205-12.el9        appstream          110 k
 adobe-mappings-pdf                      noarch  20180407-10.el9        appstream          650 k
 annobin                                 x86_64  12.98-1.el9            appstream          1.1 M
 atk                                     x86_64  2.36.0-5.el9           appstream          296 k
 avahi-libs                              x86_64  0.8-23.el9             baseos              67 k
 cairo                                   x86_64  1.17.4-7.el9           appstream          664 k
 cairo-gobject                           x86_64  1.17.4-7.el9           appstream           20 k
 cmake-data                              noarch  3.26.5-3.el9_7         appstream          2.4 M
 cmake-filesystem                        x86_64  3.26.5-3.el9_7         appstream           18 k
 cmake-rpm-macros                        noarch  3.26.5-3.el9_7         appstream          9.7 k
 cpp                                     x86_64  11.5.0-11.el9          appstream           11 M
 cups-libs                               x86_64  1:2.3.3op2-34.el9_7.2  baseos             260 k
 dbus-libs                               x86_64  1:1.12.20-8.el9        baseos             154 k
 dejavu-sans-fonts                       noarch  2.37-18.el9            baseos             1.3 M
 emacs-filesystem                        noarch  1:27.2-18.el9          appstream          9.3 k
 expat                                   x86_64  2.5.0-5.el9_7.1        baseos             117 k
 flexiblas                               x86_64  3.0.4-8.el9            appstream           34 k
 flexiblas-netlib                        x86_64  3.0.4-8.el9            appstream          3.0 M
 flexiblas-openblas-openmp               x86_64  3.0.4-8.el9            appstream           19 k
 fontconfig                              x86_64  2.14.0-2.el9_1         appstream          301 k
 fonts-filesystem                        noarch  1:2.0.5-7.el9.1        baseos              11 k
 freetype                                x86_64  2.10.4-10.el9_5        baseos             389 k
 fribidi                                 x86_64  1.0.10-6.el9.2         appstream           89 k
 gcc                                     x86_64  11.5.0-11.el9          appstream           32 M
 gcc-plugin-annobin                      x86_64  11.5.0-11.el9          appstream           37 k
 gd                                      x86_64  2.3.2-3.el9            appstream          134 k
 gdk-pixbuf2                             x86_64  2.42.6-6.el9_7.1       appstream          498 k
 gdk-pixbuf2-modules                     x86_64  2.42.6-6.el9_7.1       appstream           94 k
 glib2                                   x86_64  2.68.4-18.el9_7.1      baseos             2.6 M
 glibc-devel                             x86_64  2.34-231.el9_7.10      appstream           43 k
 glibc-headers                           x86_64  2.34-231.el9_7.10      appstream          551 k
 gnutls                                  x86_64  3.8.3-10.el9_7         baseos             1.1 M
 google-droid-sans-fonts                 noarch  20200215-11.el9.2      appstream          2.7 M
 graphite2                               x86_64  1.3.14-9.el9           baseos              98 k
 gtk-update-icon-cache                   x86_64  3.24.31-8.el9          appstream           33 k
 gtk2                                    x86_64  2.24.33-8.el9          appstream          3.5 M
 harfbuzz                                x86_64  2.7.4-10.el9           baseos             629 k
 hicolor-icon-theme                      noarch  0.17-13.el9            appstream          223 k
 jbig2dec-libs                           x86_64  0.19-7.el9             appstream           75 k
 jbigkit-libs                            x86_64  2.1-23.el9             appstream           56 k
 kernel-headers                          x86_64  5.14.0-611.49.1.el9_7  appstream          2.9 M
 langpacks-core-font-en                  noarch  3.0-16.el9             appstream           11 k
 lcms2                                   x86_64  2.12-3.el9             appstream          169 k
 libICE                                  x86_64  1.0.10-8.el9           appstream           73 k
 libSM                                   x86_64  1.2.3-10.el9           appstream           44 k
 libX11                                  x86_64  1.7.0-11.el9           appstream          648 k
 libX11-common                           noarch  1.7.0-11.el9           appstream          209 k
 libXau                                  x86_64  1.0.9-8.el9            appstream           34 k
 libXaw                                  x86_64  1.0.13-19.el9          appstream          200 k
 libXcomposite                           x86_64  0.4.5-7.el9            appstream           26 k
 libXcursor                              x86_64  1.2.0-7.el9            appstream           33 k
 libXdamage                              x86_64  1.1.5-7.el9            appstream           25 k
 libXext                                 x86_64  1.3.4-8.el9            appstream           42 k
 libXfixes                               x86_64  5.0.3-16.el9           appstream           22 k
 libXft                                  x86_64  2.3.3-8.el9            appstream           64 k
 libXi                                   x86_64  1.7.10-8.el9           appstream           41 k
 libXinerama                             x86_64  1.1.4-10.el9           appstream           17 k
 libXmu                                  x86_64  1.1.3-8.el9            appstream           78 k
 libXpm                                  x86_64  3.5.13-10.el9          appstream           61 k
 libXrandr                               x86_64  1.5.2-8.el9            appstream           30 k
 libXrender                              x86_64  0.9.10-16.el9          appstream           30 k
 libXt                                   x86_64  1.2.0-6.el9            appstream          182 k
 libdatrie                               x86_64  0.2.13-4.el9           appstream           34 k
 libedit                                 x86_64  3.1-38.20210216cvs.el9 baseos             107 k
 libfontenc                              x86_64  1.1.3-17.el9           appstream           33 k
 libgfortran                             x86_64  11.5.0-11.el9          baseos             794 k
 libgs                                   x86_64  9.54.0-19.el9_6        appstream          3.2 M
 libijs                                  x86_64  0.35-15.el9            appstream           32 k
 libjpeg-turbo                           x86_64  2.0.90-7.el9           appstream          178 k
 libmpc                                  x86_64  1.2.1-4.el9            appstream           65 k
 libpaper                                x86_64  1.1.28-4.el9           appstream           49 k
 libpng                                  x86_64  2:1.6.37-12.el9_7.2    baseos             122 k
 libquadmath                             x86_64  11.5.0-11.el9          baseos             184 k
 librsvg2                                x86_64  2.50.7-3.el9           appstream          3.2 M
 libstdc++-devel                         x86_64  11.5.0-11.el9          appstream          2.4 M
 libthai                                 x86_64  0.1.28-8.el9           appstream          211 k
 libtiff                                 x86_64  4.4.0-15.el9_7.2       appstream          196 k
 libuv                                   x86_64  1:1.42.0-2.el9_4       appstream          151 k
 libwebp                                 x86_64  1.2.0-8.el9_3          appstream          282 k
 libxcb                                  x86_64  1.13.1-9.el9           appstream          247 k
 libxcrypt-devel                         x86_64  4.4.18-3.el9           appstream           32 k
 llvm-filesystem                         x86_64  20.1.8-3.el9           appstream          9.2 k
 llvm-libs                               x86_64  20.1.8-3.el9           appstream           30 M
 maloc                                   x86_64  1.5-35.el9             copr_base           96 k
 mkfontscale                             x86_64  1.2.1-3.el9            appstream           34 k
 nettle                                  x86_64  3.10.1-1.el9           baseos             568 k
 openblas                                x86_64  0.3.29-1.el9           appstream           42 k
 openblas-openmp                         x86_64  0.3.29-1.el9           appstream          5.3 M
 openjpeg2                               x86_64  2.4.0-8.el9            appstream          165 k
 pango                                   x86_64  1.48.7-3.el9           appstream          306 k
 pixman                                  x86_64  0.40.0-6.el9_3         appstream          271 k
 pyproject-rpm-macros                    noarch  1.16.2-1.el9           codeready-builder   46 k
 python-rpm-macros                       noarch  3.9-54.el9             appstream           16 k
 python3                                 x86_64  3.9.25-3.el9_7.3       baseos              33 k
 python3-babel                           noarch  2.9.1-2.el9            appstream          6.0 M
 python3-chardet                         noarch  4.0.0-5.el9            baseos             243 k
 python3-docutils                        noarch  0.16-6.el9             appstream          1.6 M
 python3-idna                            noarch  2.10-7.el9_4.1         baseos             106 k
 python3-imagesize                       noarch  1.2.0-6.el9            codeready-builder   21 k
 python3-jinja2                          noarch  2.11.3-8.el9_5         appstream          253 k
 python3-libs                            x86_64  3.9.25-3.el9_7.3       baseos             8.1 M
 python3-markupsafe                      x86_64  1.1.1-12.el9           appstream           39 k
 python3-packaging                       noarch  20.9-5.el9             appstream           81 k
 python3-pip-wheel                       noarch  21.3.1-1.el9           baseos             1.1 M
 python3-pygments                        noarch  2.7.4-4.el9            codeready-builder  2.0 M
 python3-pyparsing                       noarch  2.4.7-9.el9            baseos             154 k
 python3-pysocks                         noarch  1.7.1-12.el9           baseos              38 k
 python3-pytz                            noarch  2021.1-5.el9           appstream           55 k
 python3-requests                        noarch  2.25.1-10.el9_6        baseos             126 k
 python3-rpm-generators                  noarch  12-9.el9               appstream           29 k
 python3-rpm-macros                      noarch  3.9-54.el9             appstream           10 k
 python3-setuptools                      noarch  53.0.0-15.el9          baseos             936 k
 python3-setuptools-wheel                noarch  53.0.0-15.el9          baseos             468 k
 python3-six                             noarch  1.15.0-9.el9           baseos              40 k
 python3-snowballstemmer                 noarch  1.9.0-10.el9           codeready-builder  168 k
 python3-sphinx-theme-alabaster          noarch  0.7.12-13.el9          codeready-builder   31 k
 python3-sphinxcontrib-applehelp         noarch  1.0.2-5.el9            codeready-builder   52 k
 python3-sphinxcontrib-devhelp           noarch  1.0.2-5.el9            codeready-builder   46 k
 python3-sphinxcontrib-htmlhelp          noarch  1.0.3-6.el9            codeready-builder   55 k
 python3-sphinxcontrib-jsmath            noarch  1.0.1-12.el9           codeready-builder   22 k
 python3-sphinxcontrib-qthelp            noarch  1.0.3-5.el9            codeready-builder   51 k
 python3-sphinxcontrib-serializinghtml   noarch  1.1.4-5.el9            codeready-builder   50 k
 python3-urllib3                         noarch  1.26.5-6.el9_7.1       baseos             225 k
 shared-mime-info                        x86_64  2.1-5.el9              baseos             561 k
 urw-base35-bookman-fonts                noarch  20200910-6.el9         appstream          850 k
 urw-base35-c059-fonts                   noarch  20200910-6.el9         appstream          878 k
 urw-base35-d050000l-fonts               noarch  20200910-6.el9         appstream           78 k
 urw-base35-fonts                        noarch  20200910-6.el9         appstream           11 k
 urw-base35-fonts-common                 noarch  20200910-6.el9         appstream           23 k
 urw-base35-gothic-fonts                 noarch  20200910-6.el9         appstream          647 k
 urw-base35-nimbus-mono-ps-fonts         noarch  20200910-6.el9         appstream          799 k
 urw-base35-nimbus-roman-fonts           noarch  20200910-6.el9         appstream          860 k
 urw-base35-nimbus-sans-fonts            noarch  20200910-6.el9         appstream          1.3 M
 urw-base35-p052-fonts                   noarch  20200910-6.el9         appstream          977 k
 urw-base35-standard-symbols-ps-fonts    noarch  20200910-6.el9         appstream           44 k
 urw-base35-z003-fonts                   noarch  20200910-6.el9         appstream          278 k
 vim-filesystem                          noarch  2:8.2.2637-23.el9_7.3  baseos              21 k
 xml-common                              noarch  0.6.3-58.el9           appstream           36 k
 xorg-x11-fonts-ISO8859-1-100dpi         noarch  7.5-33.el9             appstream          1.1 M

Transaction Summary
================================================================================================
Install  152 Packages

Total size: 193 M
Installed size: 684 M
Downloading Packages:
[SKIPPED] maloc-1.5-35.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] maloc-devel-1.5-35.el9.x86_64.rpm: Already downloaded                
[SKIPPED] chrpath-0.16-17.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] dejavu-sans-fonts-2.37-18.el9.noarch.rpm: Already downloaded         
[SKIPPED] fonts-filesystem-2.0.5-7.el9.1.noarch.rpm: Already downloaded        
[SKIPPED] graphite2-1.3.14-9.el9.x86_64.rpm: Already downloaded                
[SKIPPED] python3-chardet-4.0.0-5.el9.noarch.rpm: Already downloaded           
[SKIPPED] python3-pyparsing-2.4.7-9.el9.noarch.rpm: Already downloaded         
[SKIPPED] python3-pysocks-1.7.1-12.el9.noarch.rpm: Already downloaded          
[SKIPPED] python3-six-1.15.0-9.el9.noarch.rpm: Already downloaded              
[SKIPPED] shared-mime-info-2.1-5.el9.x86_64.rpm: Already downloaded            
[SKIPPED] dbus-libs-1.12.20-8.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libedit-3.1-38.20210216cvs.el9.x86_64.rpm: Already downloaded        
[SKIPPED] harfbuzz-2.7.4-10.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] make-4.3-8.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] python3-idna-2.10-7.el9_4.1.noarch.rpm: Already downloaded           
[SKIPPED] python3-pip-wheel-21.3.1-1.el9.noarch.rpm: Already downloaded        
[SKIPPED] freetype-2.10.4-10.el9_5.x86_64.rpm: Already downloaded              
[SKIPPED] nettle-3.10.1-1.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] python3-requests-2.25.1-10.el9_6.noarch.rpm: Already downloaded      
[SKIPPED] avahi-libs-0.8-23.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libquadmath-11.5.0-11.el9.x86_64.rpm: Already downloaded             
[SKIPPED] python3-setuptools-53.0.0-15.el9.noarch.rpm: Already downloaded      
[SKIPPED] python3-setuptools-wheel-53.0.0-15.el9.noarch.rpm: Already downloaded
[SKIPPED] libgfortran-11.5.0-11.el9.x86_64.rpm: Already downloaded             
[SKIPPED] expat-2.5.0-5.el9_7.1.x86_64.rpm: Already downloaded                 
[SKIPPED] cups-libs-2.3.3op2-34.el9_7.2.x86_64.rpm: Already downloaded         
[SKIPPED] glib2-2.68.4-18.el9_7.1.x86_64.rpm: Already downloaded               
[SKIPPED] python3-urllib3-1.26.5-6.el9_7.1.noarch.rpm: Already downloaded      
[SKIPPED] libpng-1.6.37-12.el9_7.2.x86_64.rpm: Already downloaded              
[SKIPPED] gnutls-3.8.3-10.el9_7.x86_64.rpm: Already downloaded                 
[SKIPPED] python3-3.9.25-3.el9_7.3.x86_64.rpm: Already downloaded              
[SKIPPED] python3-libs-3.9.25-3.el9_7.3.x86_64.rpm: Already downloaded         
[SKIPPED] vim-filesystem-8.2.2637-23.el9_7.3.noarch.rpm: Already downloaded    
[SKIPPED] flexiblas-openblas-openmp-3.0.4-8.el9.x86_64.rpm: Already downloaded 
[SKIPPED] libXcursor-1.2.0-7.el9.x86_64.rpm: Already downloaded                
[SKIPPED] libXext-1.3.4-8.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libXt-1.2.0-6.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] libthai-0.1.28-8.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] urw-base35-d050000l-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] urw-base35-z003-fonts-20200910-6.el9.noarch.rpm: Already downloaded  
[SKIPPED] xorg-x11-fonts-ISO8859-1-100dpi-7.5-33.el9.noarch.rpm: Already downloaded
[SKIPPED] cairo-gobject-1.17.4-7.el9.x86_64.rpm: Already downloaded            
[SKIPPED] flexiblas-3.0.4-8.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] langpacks-core-font-en-3.0-16.el9.noarch.rpm: Already downloaded     
[SKIPPED] libXft-2.3.3-8.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libXrandr-1.5.2-8.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libdatrie-0.2.13-4.el9.x86_64.rpm: Already downloaded                
[SKIPPED] libijs-0.35-15.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] mkfontscale-1.2.1-3.el9.x86_64.rpm: Already downloaded               
[SKIPPED] urw-base35-nimbus-sans-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-cmap-20171205-12.el9.noarch.rpm: Already downloaded   
[SKIPPED] lcms2-2.12-3.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] libICE-1.0.10-8.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libXi-1.7.10-8.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libmpc-1.2.1-4.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libxcrypt-devel-4.4.18-3.el9.x86_64.rpm: Already downloaded          
[SKIPPED] urw-base35-gothic-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] urw-base35-p052-fonts-20200910-6.el9.noarch.rpm: Already downloaded  
[SKIPPED] adobe-mappings-pdf-20180407-10.el9.noarch.rpm: Already downloaded    
[SKIPPED] flexiblas-netlib-3.0.4-8.el9.x86_64.rpm: Already downloaded          
[SKIPPED] google-droid-sans-fonts-20200215-11.el9.2.noarch.rpm: Already downloaded
[SKIPPED] jbigkit-libs-2.1-23.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libSM-1.2.3-10.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libXcomposite-0.4.5-7.el9.x86_64.rpm: Already downloaded             
[SKIPPED] libXmu-1.1.3-8.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libfontenc-1.1.3-17.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libpaper-1.1.28-4.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] python3-babel-2.9.1-2.el9.noarch.rpm: Already downloaded             
[SKIPPED] python3-markupsafe-1.1.1-12.el9.x86_64.rpm: Already downloaded       
[SKIPPED] python3-packaging-20.9-5.el9.noarch.rpm: Already downloaded          
[SKIPPED] urw-base35-c059-fonts-20200910-6.el9.noarch.rpm: Already downloaded  
[SKIPPED] urw-base35-fonts-20200910-6.el9.noarch.rpm: Already downloaded       
[SKIPPED] urw-base35-fonts-common-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] urw-base35-standard-symbols-ps-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] xml-common-0.6.3-58.el9.noarch.rpm: Already downloaded               
[SKIPPED] atk-2.36.0-5.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] cairo-1.17.4-7.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] gd-2.3.2-3.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] libXau-1.0.9-8.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libXaw-1.0.13-19.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libXfixes-5.0.3-16.el9.x86_64.rpm: Already downloaded                
[SKIPPED] libXinerama-1.1.4-10.el9.x86_64.rpm: Already downloaded              
[SKIPPED] libXrender-0.9.10-16.el9.x86_64.rpm: Already downloaded              
[SKIPPED] libxcb-1.13.1-9.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] urw-base35-bookman-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] urw-base35-nimbus-roman-fonts-20200910-6.el9.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-cmap-deprecated-20171205-12.el9.noarch.rpm: Already downloaded
[SKIPPED] libXdamage-1.1.5-7.el9.x86_64.rpm: Already downloaded                
[SKIPPED] fribidi-1.0.10-6.el9.2.x86_64.rpm: Already downloaded                
[SKIPPED] hicolor-icon-theme-0.17-13.el9.noarch.rpm: Already downloaded        
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  Verifying        : python3-pyparsing-2.4.7-9.el9.noarch                 8/152 
  Verifying        : python3-pysocks-1.7.1-12.el9.noarch                  9/152 
  Verifying        : python3-six-1.15.0-9.el9.noarch                     10/152 
  Verifying        : shared-mime-info-2.1-5.el9.x86_64                   11/152 
  Verifying        : dbus-libs-1:1.12.20-8.el9.x86_64                    12/152 
  Verifying        : libedit-3.1-38.20210216cvs.el9.x86_64               13/152 
  Verifying        : harfbuzz-2.7.4-10.el9.x86_64                        14/152 
  Verifying        : make-1:4.3-8.el9.x86_64                             15/152 
  Verifying        : python3-idna-2.10-7.el9_4.1.noarch                  16/152 
  Verifying        : python3-pip-wheel-21.3.1-1.el9.noarch               17/152 
  Verifying        : freetype-2.10.4-10.el9_5.x86_64                     18/152 
  Verifying        : nettle-3.10.1-1.el9.x86_64                          19/152 
  Verifying        : python3-requests-2.25.1-10.el9_6.noarch             20/152 
  Verifying        : avahi-libs-0.8-23.el9.x86_64                        21/152 
  Verifying        : libquadmath-11.5.0-11.el9.x86_64                    22/152 
  Verifying        : python3-setuptools-53.0.0-15.el9.noarch             23/152 
  Verifying        : python3-setuptools-wheel-53.0.0-15.el9.noarch       24/152 
  Verifying        : libgfortran-11.5.0-11.el9.x86_64                    25/152 
  Verifying        : expat-2.5.0-5.el9_7.1.x86_64                        26/152 
  Verifying        : cups-libs-1:2.3.3op2-34.el9_7.2.x86_64              27/152 
  Verifying        : glib2-2.68.4-18.el9_7.1.x86_64                      28/152 
  Verifying        : python3-urllib3-1.26.5-6.el9_7.1.noarch             29/152 
  Verifying        : libpng-2:1.6.37-12.el9_7.2.x86_64                   30/152 
  Verifying        : gnutls-3.8.3-10.el9_7.x86_64                        31/152 
  Verifying        : python3-3.9.25-3.el9_7.3.x86_64                     32/152 
  Verifying        : python3-libs-3.9.25-3.el9_7.3.x86_64                33/152 
  Verifying        : vim-filesystem-2:8.2.2637-23.el9_7.3.noarch         34/152 
  Verifying        : flexiblas-openblas-openmp-3.0.4-8.el9.x86_64        35/152 
  Verifying        : libXcursor-1.2.0-7.el9.x86_64                       36/152 
  Verifying        : libXext-1.3.4-8.el9.x86_64                          37/152 
  Verifying        : libXt-1.2.0-6.el9.x86_64                            38/152 
  Verifying        : libthai-0.1.28-8.el9.x86_64                         39/152 
  Verifying        : urw-base35-d050000l-fonts-20200910-6.el9.noarch     40/152 
  Verifying        : urw-base35-z003-fonts-20200910-6.el9.noarch         41/152 
  Verifying        : xorg-x11-fonts-ISO8859-1-100dpi-7.5-33.el9.noarc    42/152 
  Verifying        : cairo-gobject-1.17.4-7.el9.x86_64                   43/152 
  Verifying        : flexiblas-3.0.4-8.el9.x86_64                        44/152 
  Verifying        : langpacks-core-font-en-3.0-16.el9.noarch            45/152 
  Verifying        : libXft-2.3.3-8.el9.x86_64                           46/152 
  Verifying        : libXrandr-1.5.2-8.el9.x86_64                        47/152 
  Verifying        : libdatrie-0.2.13-4.el9.x86_64                       48/152 
  Verifying        : libijs-0.35-15.el9.x86_64                           49/152 
  Verifying        : mkfontscale-1.2.1-3.el9.x86_64                      50/152 
  Verifying        : urw-base35-nimbus-sans-fonts-20200910-6.el9.noar    51/152 
  Verifying        : adobe-mappings-cmap-20171205-12.el9.noarch          52/152 
  Verifying        : lcms2-2.12-3.el9.x86_64                             53/152 
  Verifying        : libICE-1.0.10-8.el9.x86_64                          54/152 
  Verifying        : libXi-1.7.10-8.el9.x86_64                           55/152 
  Verifying        : libmpc-1.2.1-4.el9.x86_64                           56/152 
  Verifying        : libxcrypt-devel-4.4.18-3.el9.x86_64                 57/152 
  Verifying        : urw-base35-gothic-fonts-20200910-6.el9.noarch       58/152 
  Verifying        : urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.n    59/152 
  Verifying        : urw-base35-p052-fonts-20200910-6.el9.noarch         60/152 
  Verifying        : adobe-mappings-pdf-20180407-10.el9.noarch           61/152 
  Verifying        : flexiblas-netlib-3.0.4-8.el9.x86_64                 62/152 
  Verifying        : google-droid-sans-fonts-20200215-11.el9.2.noarch    63/152 
  Verifying        : jbigkit-libs-2.1-23.el9.x86_64                      64/152 
  Verifying        : libSM-1.2.3-10.el9.x86_64                           65/152 
  Verifying        : libXcomposite-0.4.5-7.el9.x86_64                    66/152 
  Verifying        : libXmu-1.1.3-8.el9.x86_64                           67/152 
  Verifying        : libfontenc-1.1.3-17.el9.x86_64                      68/152 
  Verifying        : libpaper-1.1.28-4.el9.x86_64                        69/152 
  Verifying        : python3-babel-2.9.1-2.el9.noarch                    70/152 
  Verifying        : python3-markupsafe-1.1.1-12.el9.x86_64              71/152 
  Verifying        : python3-packaging-20.9-5.el9.noarch                 72/152 
  Verifying        : urw-base35-c059-fonts-20200910-6.el9.noarch         73/152 
  Verifying        : urw-base35-fonts-20200910-6.el9.noarch              74/152 
  Verifying        : urw-base35-fonts-common-20200910-6.el9.noarch       75/152 
  Verifying        : urw-base35-standard-symbols-ps-fonts-20200910-6.    76/152 
  Verifying        : xml-common-0.6.3-58.el9.noarch                      77/152 
  Verifying        : atk-2.36.0-5.el9.x86_64                             78/152 
  Verifying        : cairo-1.17.4-7.el9.x86_64                           79/152 
  Verifying        : gd-2.3.2-3.el9.x86_64                               80/152 
  Verifying        : libXau-1.0.9-8.el9.x86_64                           81/152 
  Verifying        : libXaw-1.0.13-19.el9.x86_64                         82/152 
  Verifying        : libXfixes-5.0.3-16.el9.x86_64                       83/152 
  Verifying        : libXinerama-1.1.4-10.el9.x86_64                     84/152 
  Verifying        : libXrender-0.9.10-16.el9.x86_64                     85/152 
  Verifying        : libxcb-1.13.1-9.el9.x86_64                          86/152 
  Verifying        : urw-base35-bookman-fonts-20200910-6.el9.noarch      87/152 
  Verifying        : urw-base35-nimbus-roman-fonts-20200910-6.el9.noa    88/152 
  Verifying        : adobe-mappings-cmap-deprecated-20171205-12.el9.n    89/152 
  Verifying        : libXdamage-1.1.5-7.el9.x86_64                       90/152 
  Verifying        : fribidi-1.0.10-6.el9.2.x86_64                       91/152 
  Verifying        : hicolor-icon-theme-0.17-13.el9.noarch               92/152 
  Verifying        : fontconfig-2.14.0-2.el9_1.x86_64                    93/152 
  Verifying        : jbig2dec-libs-0.19-7.el9.x86_64                     94/152 
  Verifying        : gtk2-2.24.33-8.el9.x86_64                           95/152 
  Verifying        : pango-1.48.7-3.el9.x86_64                           96/152 
  Verifying        : python3-pytz-2021.1-5.el9.noarch                    97/152 
  Verifying        : libwebp-1.2.0-8.el9_3.x86_64                        98/152 
  Verifying        : pixman-0.40.0-6.el9_3.x86_64                        99/152 
  Verifying        : zlib-devel-1.2.11-40.el9.x86_64                    100/152 
  Verifying        : graphviz-2.44.0-26.el9.x86_64                      101/152 
  Verifying        : libXpm-3.5.13-10.el9.x86_64                        102/152 
  Verifying        : libjpeg-turbo-2.0.90-7.el9.x86_64                  103/152 
  Verifying        : librsvg2-2.50.7-3.el9.x86_64                       104/152 
  Verifying        : python3-rpm-generators-12-9.el9.noarch             105/152 
  Verifying        : libuv-1:1.42.0-2.el9_4.x86_64                      106/152 
  Verifying        : python3-docutils-0.16-6.el9.noarch                 107/152 
  Verifying        : python3-rpm-macros-3.9-54.el9.noarch               108/152 
  Verifying        : python-rpm-macros-3.9-54.el9.noarch                109/152 
  Verifying        : python3-jinja2-2.11.3-8.el9_5.noarch               110/152 
  Verifying        : libX11-1.7.0-11.el9.x86_64                         111/152 
  Verifying        : openjpeg2-2.4.0-8.el9.x86_64                       112/152 
  Verifying        : libX11-common-1.7.0-11.el9.noarch                  113/152 
  Verifying        : libgs-9.54.0-19.el9_6.x86_64                       114/152 
  Verifying        : annobin-12.98-1.el9.x86_64                         115/152 
  Verifying        : cpp-11.5.0-11.el9.x86_64                           116/152 
  Verifying        : emacs-filesystem-1:27.2-18.el9.noarch              117/152 
  Verifying        : gtk-update-icon-cache-3.24.31-8.el9.x86_64         118/152 
  Verifying        : libstdc++-devel-11.5.0-11.el9.x86_64               119/152 
  Verifying        : gcc-11.5.0-11.el9.x86_64                           120/152 
  Verifying        : gcc-c++-11.5.0-11.el9.x86_64                       121/152 
  Verifying        : gcc-plugin-annobin-11.5.0-11.el9.x86_64            122/152 
  Verifying        : llvm-filesystem-20.1.8-3.el9.x86_64                123/152 
  Verifying        : llvm-libs-20.1.8-3.el9.x86_64                      124/152 
  Verifying        : openblas-0.3.29-1.el9.x86_64                       125/152 
  Verifying        : openblas-openmp-0.3.29-1.el9.x86_64                126/152 
  Verifying        : libtiff-4.4.0-15.el9_7.2.x86_64                    127/152 
  Verifying        : cmake-3.26.5-3.el9_7.x86_64                        128/152 
  Verifying        : cmake-data-3.26.5-3.el9_7.noarch                   129/152 
  Verifying        : cmake-filesystem-3.26.5-3.el9_7.x86_64             130/152 
  Verifying        : cmake-rpm-macros-3.26.5-3.el9_7.noarch             131/152 
  Verifying        : glibc-devel-2.34-231.el9_7.10.x86_64               132/152 
  Verifying        : glibc-headers-2.34-231.el9_7.10.x86_64             133/152 
  Verifying        : python3-numpy-1:1.23.5-2.el9_7.x86_64              134/152 
  Verifying        : kernel-headers-5.14.0-611.49.1.el9_7.x86_64        135/152 
  Verifying        : gdk-pixbuf2-2.42.6-6.el9_7.1.x86_64                136/152 
  Verifying        : gdk-pixbuf2-modules-2.42.6-6.el9_7.1.x86_64        137/152 
  Verifying        : python3-devel-3.9.25-3.el9_7.3.x86_64              138/152 
  Verifying        : python3-imagesize-1.2.0-6.el9.noarch               139/152 
  Verifying        : python3-pygments-2.7.4-4.el9.noarch                140/152 
  Verifying        : python3-snowballstemmer-1.9.0-10.el9.noarch        141/152 
  Verifying        : python3-sphinxcontrib-jsmath-1.0.1-12.el9.noarch   142/152 
  Verifying        : python3-sphinxcontrib-qthelp-1.0.3-5.el9.noarch    143/152 
  Verifying        : python3-sphinxcontrib-serializinghtml-1.1.4-5.el   144/152 
  Verifying        : swig-4.0.2-8.el9.x86_64                            145/152 
  Verifying        : python3-sphinx-theme-alabaster-0.7.12-13.el9.noa   146/152 
  Verifying        : python3-sphinxcontrib-applehelp-1.0.2-5.el9.noar   147/152 
  Verifying        : python3-sphinxcontrib-devhelp-1.0.2-5.el9.noarch   148/152 
  Verifying        : python3-sphinxcontrib-htmlhelp-1.0.3-6.el9.noarc   149/152 
  Verifying        : python3-sphinx-1:3.4.3-8.el9.noarch                150/152 
  Verifying        : doxygen-1:1.9.1-12.el9_5.x86_64                    151/152 
  Verifying        : pyproject-rpm-macros-1.16.2-1.el9.noarch           152/152 
Installed products updated.

Installed:
  adobe-mappings-cmap-20171205-12.el9.noarch                                    
  adobe-mappings-cmap-deprecated-20171205-12.el9.noarch                         
  adobe-mappings-pdf-20180407-10.el9.noarch                                     
  annobin-12.98-1.el9.x86_64                                                    
  atk-2.36.0-5.el9.x86_64                                                       
  avahi-libs-0.8-23.el9.x86_64                                                  
  cairo-1.17.4-7.el9.x86_64                                                     
  cairo-gobject-1.17.4-7.el9.x86_64                                             
  chrpath-0.16-17.el9.x86_64                                                    
  cmake-3.26.5-3.el9_7.x86_64                                                   
  cmake-data-3.26.5-3.el9_7.noarch                                              
  cmake-filesystem-3.26.5-3.el9_7.x86_64                                        
  cmake-rpm-macros-3.26.5-3.el9_7.noarch                                        
  cpp-11.5.0-11.el9.x86_64                                                      
  cups-libs-1:2.3.3op2-34.el9_7.2.x86_64                                        
  dbus-libs-1:1.12.20-8.el9.x86_64                                              
  dejavu-sans-fonts-2.37-18.el9.noarch                                          
  doxygen-1:1.9.1-12.el9_5.x86_64                                               
  emacs-filesystem-1:27.2-18.el9.noarch                                         
  expat-2.5.0-5.el9_7.1.x86_64                                                  
  flexiblas-3.0.4-8.el9.x86_64                                                  
  flexiblas-netlib-3.0.4-8.el9.x86_64                                           
  flexiblas-openblas-openmp-3.0.4-8.el9.x86_64                                  
  fontconfig-2.14.0-2.el9_1.x86_64                                              
  fonts-filesystem-1:2.0.5-7.el9.1.noarch                                       
  freetype-2.10.4-10.el9_5.x86_64                                               
  fribidi-1.0.10-6.el9.2.x86_64                                                 
  gcc-11.5.0-11.el9.x86_64                                                      
  gcc-c++-11.5.0-11.el9.x86_64                                                  
  gcc-plugin-annobin-11.5.0-11.el9.x86_64                                       
  gd-2.3.2-3.el9.x86_64                                                         
  gdk-pixbuf2-2.42.6-6.el9_7.1.x86_64                                           
  gdk-pixbuf2-modules-2.42.6-6.el9_7.1.x86_64                                   
  glib2-2.68.4-18.el9_7.1.x86_64                                                
  glibc-devel-2.34-231.el9_7.10.x86_64                                          
  glibc-headers-2.34-231.el9_7.10.x86_64                                        
  gnutls-3.8.3-10.el9_7.x86_64                                                  
  google-droid-sans-fonts-20200215-11.el9.2.noarch                              
  graphite2-1.3.14-9.el9.x86_64                                                 
  graphviz-2.44.0-26.el9.x86_64                                                 
  gtk-update-icon-cache-3.24.31-8.el9.x86_64                                    
  gtk2-2.24.33-8.el9.x86_64                                                     
  harfbuzz-2.7.4-10.el9.x86_64                                                  
  hicolor-icon-theme-0.17-13.el9.noarch                                         
  jbig2dec-libs-0.19-7.el9.x86_64                                               
  jbigkit-libs-2.1-23.el9.x86_64                                                
  kernel-headers-5.14.0-611.49.1.el9_7.x86_64                                   
  langpacks-core-font-en-3.0-16.el9.noarch                                      
  lcms2-2.12-3.el9.x86_64                                                       
  libICE-1.0.10-8.el9.x86_64                                                    
  libSM-1.2.3-10.el9.x86_64                                                     
  libX11-1.7.0-11.el9.x86_64                                                    
  libX11-common-1.7.0-11.el9.noarch                                             
  libXau-1.0.9-8.el9.x86_64                                                     
  libXaw-1.0.13-19.el9.x86_64                                                   
  libXcomposite-0.4.5-7.el9.x86_64                                              
  libXcursor-1.2.0-7.el9.x86_64                                                 
  libXdamage-1.1.5-7.el9.x86_64                                                 
  libXext-1.3.4-8.el9.x86_64                                                    
  libXfixes-5.0.3-16.el9.x86_64                                                 
  libXft-2.3.3-8.el9.x86_64                                                     
  libXi-1.7.10-8.el9.x86_64                                                     
  libXinerama-1.1.4-10.el9.x86_64                                               
  libXmu-1.1.3-8.el9.x86_64                                                     
  libXpm-3.5.13-10.el9.x86_64                                                   
  libXrandr-1.5.2-8.el9.x86_64                                                  
  libXrender-0.9.10-16.el9.x86_64                                               
  libXt-1.2.0-6.el9.x86_64                                                      
  libdatrie-0.2.13-4.el9.x86_64                                                 
  libedit-3.1-38.20210216cvs.el9.x86_64                                         
  libfontenc-1.1.3-17.el9.x86_64                                                
  libgfortran-11.5.0-11.el9.x86_64                                              
  libgs-9.54.0-19.el9_6.x86_64                                                  
  libijs-0.35-15.el9.x86_64                                                     
  libjpeg-turbo-2.0.90-7.el9.x86_64                                             
  libmpc-1.2.1-4.el9.x86_64                                                     
  libpaper-1.1.28-4.el9.x86_64                                                  
  libpng-2:1.6.37-12.el9_7.2.x86_64                                             
  libquadmath-11.5.0-11.el9.x86_64                                              
  librsvg2-2.50.7-3.el9.x86_64                                                  
  libstdc++-devel-11.5.0-11.el9.x86_64                                          
  libthai-0.1.28-8.el9.x86_64                                                   
  libtiff-4.4.0-15.el9_7.2.x86_64                                               
  libuv-1:1.42.0-2.el9_4.x86_64                                                 
  libwebp-1.2.0-8.el9_3.x86_64                                                  
  libxcb-1.13.1-9.el9.x86_64                                                    
  libxcrypt-devel-4.4.18-3.el9.x86_64                                           
  llvm-filesystem-20.1.8-3.el9.x86_64                                           
  llvm-libs-20.1.8-3.el9.x86_64                                                 
  make-1:4.3-8.el9.x86_64                                                       
  maloc-1.5-35.el9.x86_64                                                       
  maloc-devel-1.5-35.el9.x86_64                                                 
  mkfontscale-1.2.1-3.el9.x86_64                                                
  nettle-3.10.1-1.el9.x86_64                                                    
  openblas-0.3.29-1.el9.x86_64                                                  
  openblas-openmp-0.3.29-1.el9.x86_64                                           
  openjpeg2-2.4.0-8.el9.x86_64                                                  
  pango-1.48.7-3.el9.x86_64                                                     
  pixman-0.40.0-6.el9_3.x86_64                                                  
  pyproject-rpm-macros-1.16.2-1.el9.noarch                                      
  python-rpm-macros-3.9-54.el9.noarch                                           
  python3-3.9.25-3.el9_7.3.x86_64                                               
  python3-babel-2.9.1-2.el9.noarch                                              
  python3-chardet-4.0.0-5.el9.noarch                                            
  python3-devel-3.9.25-3.el9_7.3.x86_64                                         
  python3-docutils-0.16-6.el9.noarch                                            
  python3-idna-2.10-7.el9_4.1.noarch                                            
  python3-imagesize-1.2.0-6.el9.noarch                                          
  python3-jinja2-2.11.3-8.el9_5.noarch                                          
  python3-libs-3.9.25-3.el9_7.3.x86_64                                          
  python3-markupsafe-1.1.1-12.el9.x86_64                                        
  python3-numpy-1:1.23.5-2.el9_7.x86_64                                         
  python3-packaging-20.9-5.el9.noarch                                           
  python3-pip-wheel-21.3.1-1.el9.noarch                                         
  python3-pygments-2.7.4-4.el9.noarch                                           
  python3-pyparsing-2.4.7-9.el9.noarch                                          
  python3-pysocks-1.7.1-12.el9.noarch                                           
  python3-pytz-2021.1-5.el9.noarch                                              
  python3-requests-2.25.1-10.el9_6.noarch                                       
  python3-rpm-generators-12-9.el9.noarch                                        
  python3-rpm-macros-3.9-54.el9.noarch                                          
  python3-setuptools-53.0.0-15.el9.noarch                                       
  python3-setuptools-wheel-53.0.0-15.el9.noarch                                 
  python3-six-1.15.0-9.el9.noarch                                               
  python3-snowballstemmer-1.9.0-10.el9.noarch                                   
  python3-sphinx-1:3.4.3-8.el9.noarch                                           
  python3-sphinx-theme-alabaster-0.7.12-13.el9.noarch                           
  python3-sphinxcontrib-applehelp-1.0.2-5.el9.noarch                            
  python3-sphinxcontrib-devhelp-1.0.2-5.el9.noarch                              
  python3-sphinxcontrib-htmlhelp-1.0.3-6.el9.noarch                             
  python3-sphinxcontrib-jsmath-1.0.1-12.el9.noarch                              
  python3-sphinxcontrib-qthelp-1.0.3-5.el9.noarch                               
  python3-sphinxcontrib-serializinghtml-1.1.4-5.el9.noarch                      
  python3-urllib3-1.26.5-6.el9_7.1.noarch                                       
  shared-mime-info-2.1-5.el9.x86_64                                             
  swig-4.0.2-8.el9.x86_64                                                       
  urw-base35-bookman-fonts-20200910-6.el9.noarch                                
  urw-base35-c059-fonts-20200910-6.el9.noarch                                   
  urw-base35-d050000l-fonts-20200910-6.el9.noarch                               
  urw-base35-fonts-20200910-6.el9.noarch                                        
  urw-base35-fonts-common-20200910-6.el9.noarch                                 
  urw-base35-gothic-fonts-20200910-6.el9.noarch                                 
  urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.noarch                         
  urw-base35-nimbus-roman-fonts-20200910-6.el9.noarch                           
  urw-base35-nimbus-sans-fonts-20200910-6.el9.noarch                            
  urw-base35-p052-fonts-20200910-6.el9.noarch                                   
  urw-base35-standard-symbols-ps-fonts-20200910-6.el9.noarch                    
  urw-base35-z003-fonts-20200910-6.el9.noarch                                   
  vim-filesystem-2:8.2.2637-23.el9_7.3.noarch                                   
  xml-common-0.6.3-58.el9.noarch                                                
  xorg-x11-fonts-ISO8859-1-100dpi-7.5-33.el9.noarch                             
  zlib-devel-1.2.11-40.el9.x86_64                                               

Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674000000
Wrote: /builddir/build/SRPMS/apbs-3.0.0-17.el9.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  67 kB/s | 1.5 kB     00:00    
Red Hat Enterprise Linux - BaseOS                69 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             45 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil 121 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  168 kB/s |  24 kB     00:00    
Package chrpath-0.16-17.el9.x86_64 is already installed.
Package cmake-3.26.5-3.el9_7.x86_64 is already installed.
Package doxygen-1:1.9.1-12.el9_5.x86_64 is already installed.
Package gcc-c++-11.5.0-11.el9.x86_64 is already installed.
Package graphviz-2.44.0-26.el9.x86_64 is already installed.
Package make-1:4.3-8.el9.x86_64 is already installed.
Package maloc-devel-1.5-35.el9.x86_64 is already installed.
Package python3-devel-3.9.25-3.el9_7.3.x86_64 is already installed.
Package python3-numpy-1:1.23.5-2.el9_7.x86_64 is already installed.
Package python3-sphinx-1:3.4.3-8.el9.noarch is already installed.
Package swig-4.0.2-8.el9.x86_64 is already installed.
Package zlib-devel-1.2.11-40.el9.x86_64 is already installed.
Dependencies resolved.
Nothing to do.
Complete!
Finish: build setup for apbs-3.0.0-17.el9.src.rpm
Start: rpmbuild apbs-3.0.0-17.el9.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674000000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7vJEiM
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf apbs-3.0.0
+ /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-3.0.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd apbs-3.0.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (apbs-cmake.patch):
+ echo 'Patch #0 (apbs-cmake.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p2 -b --suffix .apbs-cmake --fuzz=0
patching file CMakeLists.txt
patching file src/CMakeLists.txt
patching file tools/manip/CMakeLists.txt
patching file tools/mesh/CMakeLists.txt
Patch #1 (apbs-exclude_tests.patch):
+ echo 'Patch #1 (apbs-exclude_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .exclude_tests --fuzz=0
patching file tests/test_cases.cfg
+ cp -p contrib/iapbs/COPYING contrib/iapbs/iapbs-COPYING
+ cp -p /builddir/build/SOURCES/apbs-LGPL_V2 contrib/iapbs/iapbs-LGPLv2
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.oSWle9
+ umask 022
+ cd /builddir/build/BUILD
+ cd apbs-3.0.0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm'
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm'
+ mkdir -p build
+ cmake -S . -B build -DCMAKE_BUILD_TYPE:STRING=Release -DENABLE_iAPBS:BOOL=ON -DENABLE_OPENMP:BOOL=ON -DENABLE_VERBOSE_DEBUG:BOOL=OFF -DENABLE_FETK:BOOL=OFF '-DCMAKE_C_FLAGS:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -DNDEBUG' '-DCMAKE_CXX_FLAGS:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -DNDEBUG' -DBUILD_SHARED_LIBS:BOOL=OFF -DENABLE_PYTHON:BOOL=ON -DBUILD_TESTING:BOOL=ON -DENABLE_TESTS:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSHARE_INSTALL_PREFIX:PATH=/usr/share
CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy):
  The OLD behavior for policy CMP0054 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is GNU 11.5.0
-- The CXX compiler identification is GNU 11.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting project paths
-- Setting lookup paths for headers and libraries
-- Computing machine epsilon values
-- Floating point epsilon is 2.220446e-16
-- Double precision epsilon is 2.220446e-16
-- Looking for time
-- Looking for time - found
-- Looking for rand
-- Looking for rand - found
-- Looking for srand
-- Looking for srand - found
-- Inline functions enabled
-- Checking for OpenMP
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- OpenMP support enabled
CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Adding apbs_generic
-- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
-- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp
-- Added apbs_generic
-- Adding apbs_pmgc
-- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
-- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp
-- Added apbs_pmgc
-- Adding apbs_mg
-- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
-- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp;apbs_generic;apbs_pmgc
-- Added apbs_mg
-- Adding apbs_routines
-- With source files routines.c
-- With external header files 
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp
-- Added apbs_routines
-- External Headers: 
--  
-- APBS Libraries: m;stdc++;maloc;-fopenmp
-- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines
--  
-- -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -DNDEBUG -fPIC
-- Supplemental tools enabled
-- Building mesh
-- libraries: apbs
-- Building manip
-- libraries: apbs
CMake Deprecation Warning at tools/python/CMakeLists.txt:2 (CMAKE_POLICY):
  The OLD behavior for policy CMP0078 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/python/CMakeLists.txt:3 (CMAKE_POLICY):
  The OLD behavior for policy CMP0086 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- Found SWIG: /usr/bin/swig (found version "4.0.2")  
-- Found Python3: /usr/bin/python3.9 (found version "3.9.25") found components: Interpreter Development Development.Module Development.Embed 
-- ******* Python3 FOUND
-- ***** Python3 include path is: /usr/include/python3.9
-- ***** Python3 library path is: /usr/lib64/libpython3.9.so
-- ***** Python3 library dir  is: /usr/lib64
-- Building of iAPBS interface enabled
-- Found Python3: /usr/bin/python3.9 (found version "3.9.25") found components: Interpreter 
-- ******* Python3 FOUND /usr/bin/python3.9
-- TEST born_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t born
-- TEST actin-dimer-auto_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t actin-dimer-auto
-- TEST actin-dimer-parallel_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t actin-dimer-parallel
-- TEST alkanes_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t alkanes
-- TEST FKBP_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t FKBP
-- TEST hca-bind_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t hca-bind
-- TEST ionize_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t ionize
-- TEST ion-pmf_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t ion-pmf
-- TEST ion-protein_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t ion-protein
-- TEST pka-lig_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t pka-lig
-- TEST point-pmf_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t point-pmf
-- TEST solv_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0/build/apbs -t solv
-- Configuring done (1.8s)
-- Generating done (0.0s)
-- Build files have been written to: /builddir/build/BUILD/apbs-3.0.0/build
+ make -O -j1 V=1 -C build
make: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[1]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[  1%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c: In function 'Vgrid_readDXBIN':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c:816:13: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable]
  816 |         int isBinary = 0;
      |             ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c:813:25: warning: unused variable 'itmp' [-Wunused-variable]
  813 |         size_t i, j, k, itmp, u;
      |                         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c: In function 'Vgrid_writeUHBD':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
 1697 |     double xmin, ymin, zmin, hzed, hy, hx;
      |                                    ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
 1697 |     double xmin, ymin, zmin, hzed, hy, hx;
      |                              ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c: In function 'Vgrid_readDXBIN':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vgrid.c:853:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  853 |                 fgets(tok, VMAX_BUFSIZE, fd);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  2%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o
/builddir/build/BUILD/apbs-3.0.0/src/mg/vmgrid.c: In function 'Vmgrid_addGrid':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable]
  198 |     double tgrad[3];
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable]
  197 |     int i, j, rc;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable]
  197 |     int i, j, rc;
      |            ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable]
  197 |     int i, j, rc;
      |         ^
[  3%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o
/builddir/build/BUILD/apbs-3.0.0/src/mg/vopot.c: In function 'Vopot_curvature':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable]
  219 |     double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable]
  219 |     double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable]
  219 |     double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
      |               ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
  269 |                     u = u + val;
      |                     ~~^~~~~~~~~
[  4%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_ctor2':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable]
  157 |     double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2;
      |                                                             ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1503:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable]
 1503 |            zks2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1712:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable]
 1712 |     double *pvec;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1709:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable]
 1709 |     double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1709:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable]
 1709 |     double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1709:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable]
 1709 |     double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1794:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable]
 1794 |     double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
      |                                    ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1794:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable]
 1794 |     double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1794:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable]
 1794 |     double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'focusFillBound':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1953:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable]
 1953 |            charge,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1952:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable]
 1952 |            *apos,
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1951:12: warning: variable 'size' set but not used [-Wunused-but-set-variable]
 1951 |            size,
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1950:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable]
 1950 |            xkappa,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcfl2':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2668:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable]
 2668 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                        ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2668:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable]
 2668 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                    ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2668:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable]
 2668 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                        ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcCalcOrig':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2832:34: warning: unused variable 'debye' [-Wunused-variable]
 2832 |     double *dipole, *quadrupole, debye, eps_p;
      |                                  ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2832:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable]
 2832 |     double *dipole, *quadrupole, debye, eps_p;
      |                      ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2832:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable]
 2832 |     double *dipole, *quadrupole, debye, eps_p;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcflnew':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3415:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable]
 3415 |     double dist, pre1, eps_w, eps_p, T, xkappa;
      |                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3410:29: warning: unused variable 'z1' [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                             ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3410:25: warning: unused variable 'z0' [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                         ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3410:21: warning: unused variable 'y1' [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                     ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3410:17: warning: unused variable 'y0' [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                 ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3410:13: warning: unused variable 'x1' [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3410:9: warning: unused variable 'x0' [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |         ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3409:13: warning: unused variable 'k' [-Wunused-variable]
 3409 |     int i,j,k, iatom, igrid;
      |             ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3409:11: warning: unused variable 'j' [-Wunused-variable]
 3409 |     int i,j,k, iatom, igrid;
      |           ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3409:9: warning: unused variable 'i' [-Wunused-variable]
 3409 |     int i,j,k, iatom, igrid;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'multipolebc':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3492:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable]
 3492 |     double kr,kr2,kr3;
      |                   ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcfl_sdh':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3608:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable]
 3608 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                        ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3608:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable]
 3608 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                    ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3608:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable]
 3608 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                        ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3604:22: warning: unused variable 'quadrupole' [-Wunused-variable]
 3604 |     double *dipole, *quadrupole;
      |                      ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3604:13: warning: unused variable 'dipole' [-Wunused-variable]
 3604 |     double *dipole, *quadrupole;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcfl_mdh':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3875:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable]
 3875 |     double size, charge, xkappa, eps_w, eps_p, T, pre1, dist;
      |                                         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3874:22: warning: unused variable 'quadrupole' [-Wunused-variable]
 3874 |     double *dipole, *quadrupole;
      |                      ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3874:13: warning: unused variable 'dipole' [-Wunused-variable]
 3874 |     double *dipole, *quadrupole;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcfl_mem':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4008:24: warning: unused variable 'edge_L' [-Wunused-variable]
 4008 |     double A, B, C, D, edge_L, l;
      |                        ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4007:38: warning: unused variable 'z_shift' [-Wunused-variable]
 4007 |     double dist, val, z_low, z_high, z_shift;
      |                                      ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4007:12: warning: unused variable 'dist' [-Wunused-variable]
 4007 |     double dist, val, z_low, z_high, z_shift;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcfl_map':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4177:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
 4177 |     double position[3], pot, hx, hy, hzed;
      |                                      ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4177:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
 4177 |     double position[3], pot, hx, hy, hzed;
      |                                  ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4177:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable]
 4177 |     double position[3], pot, hx, hy, hzed;
      |                              ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4176:11: warning: unused variable 'pbe' [-Wunused-variable]
 4176 |     Vpbe *pbe;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCoefMap':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4492:46: warning: unused variable 'pot' [-Wunused-variable]
 4492 |     double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed;
      |                                              ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCoefMolIon':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4638:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable]
 4638 |     Vsurf_Meth surfMeth;
      |                ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4630:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable]
 4630 |     Vacc *acc;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:4746:30: warning: unused variable 'deps' [-Wunused-variable]
 4746 |     double srad, epsw, epsp, deps, area;
      |                              ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCoefSpline':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5031:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
 5031 |     double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i;
      |                                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCharge':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5289:15: warning: unused variable 'rc' [-Wunused-variable]
 5289 |     Vrc_Codes rc;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoChargeMap':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5346:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
 5346 |     double position[3], charge, zmagic, hx, hy, hzed;
      |                                                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5346:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
 5346 |     double position[3], charge, zmagic, hx, hy, hzed;
      |                                             ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5346:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable]
 5346 |     double position[3], charge, zmagic, hx, hy, hzed;
      |                                         ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_force':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5829:12: warning: unused variable 'npF' [-Wunused-variable]
 5829 |     double npF[3];                  /* Non-polar boundary force */
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_ibForce':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5854:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
 5854 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5854:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
 5854 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5854:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
 5854 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:5848:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable]
 5848 |     Valist *alist;
      |             ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_dbForce':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6019:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable]
 6019 |     double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT;
      |                                                       ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6019:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
 6019 |     double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT;
      |                  ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6018:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |                                                                  ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6018:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6018:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6018:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'qfForceSpline2':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6453:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
 6453 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6453:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
 6453 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6453:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
 6453 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'qfForceSpline4':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6576:15: warning: unused variable 'k' [-Wunused-variable]
 6576 |     int i, j, k, ii, jj, kk;
      |               ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6576:12: warning: unused variable 'j' [-Wunused-variable]
 6576 |     int i, j, k, ii, jj, kk;
      |            ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6568:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
 6568 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6568:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
 6568 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6568:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
 6568 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'markFrac':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6692:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable]
 6692 |     double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2;
      |                                       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'zlapSolve':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6912:12: warning: unused variable 'norm' [-Wunused-variable]
 6912 |     double norm, coef, proj, eigx, eigy, eigz;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'Vpmg_solveLaplace':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7044:35: warning: variable 'n' set but not used [-Wunused-but-set-variable]
 7044 |     int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi;
      |                                   ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7044:18: warning: unused variable 'ijk' [-Wunused-variable]
 7044 |     int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoPermanentMultipole':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:58: warning: unused variable 'mqzz' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                                          ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:53: warning: unused variable 'mqzy' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                                     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:48: warning: unused variable 'mqzx' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                                ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:43: warning: unused variable 'mqyy' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:38: warning: unused variable 'mqyx' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                      ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:33: warning: unused variable 'mqxx' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:29: warning: unused variable 'muz' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                             ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:25: warning: unused variable 'muy' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:21: warning: unused variable 'mux' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:18: warning: unused variable 'mc' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                  ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7263:12: warning: unused variable 'debye' [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7262:24: warning: unused variable 'mr2' [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |                        ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7262:20: warning: unused variable 'mkr' [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |                    ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7262:16: warning: unused variable 'mjr' [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7262:12: warning: unused variable 'mir' [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7258:9: warning: unused variable 'i' [-Wunused-variable]
 7258 |     int i, ii, jj, kk, nx, ny, nz, iatom;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7253:47: warning: unused variable 'qave' [-Wunused-variable]
 7253 |     double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave;
      |                                               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7252:29: warning: unused variable 'quad' [-Wunused-variable]
 7252 |     double charge, *dipole,*quad;
      |                             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7252:21: warning: unused variable 'dipole' [-Wunused-variable]
 7252 |     double charge, *dipole,*quad;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCoefSpline4':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:9948:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
 9948 |     double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin;
      |                                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:9946:42: warning: unused variable 'w2i' [-Wunused-variable]
 9946 |     double irad, dx, dy, dz, epsw, epsp, w2i;
      |                                          ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoPermanentInduced':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10278:9: warning: unused variable 'i' [-Wunused-variable]
10278 |     int i, ii, jj, kk, nx, ny, nz, iatom;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10273:47: warning: unused variable 'qave' [-Wunused-variable]
10273 |     double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave;
      |                                               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10272:29: warning: unused variable 'quad' [-Wunused-variable]
10272 |     double charge, *dipole,*quad;
      |                             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10272:21: warning: unused variable 'dipole' [-Wunused-variable]
10272 |     double charge, *dipole,*quad;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'fillcoCoefSpline3':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10441:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable]
10441 |     double e, e2, e3, e4, e5;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10439:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
10439 |     double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin;
      |                                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10437:42: warning: unused variable 'w2i' [-Wunused-variable]
10437 |     double irad, dx, dy, dz, epsw, epsp, w2i;
      |                                          ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcolcomp':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10746:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |                                                       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10746:47: warning: unused variable 'maxlev' [-Wunused-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |                                               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10746:39: warning: unused variable 'ierror' [-Wunused-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |                                       ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10746:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10746:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10743:29: warning: unused variable 'i' [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |                             ^
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10743:21: warning: unused variable 'nnzero' [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10743:15: warning: unused variable 'ncol' [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10743:9: warning: unused variable 'nrow' [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |         ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:73:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcolcomp2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10804:5: note: in expansion of macro 'MAT2'
10804 |     MAT2(iz, 50, nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcolcomp3':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10836:5: note: in expansion of macro 'MAT2'
10836 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: In function 'bcolcomp4':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10874:5: note: in expansion of macro 'MAT3'
10874 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10873:5: note: in expansion of macro 'MAT3'
10873 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10872:5: note: in expansion of macro 'MAT3'
10872 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10871:5: note: in expansion of macro 'MAT3'
10871 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10870:5: note: in expansion of macro 'MAT3'
10870 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:10866:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
10866 |     int inonz, iirow, nn, nrow, ncol, nonz, irow, n;
      |                           ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:73:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:7229:16: warning: 'd3bspline4' defined but not used [-Wunused-function]
 7229 | VPUBLIC double d3bspline4(double x) {
      |                ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:6684:15: warning: 'markFrac' defined but not used [-Wunused-function]
 6684 | VPRIVATE void markFrac(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:3868:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function]
 3868 | VPRIVATE void bcfl_mdh(Vpmg *thee){
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2828:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function]
 2828 | VPRIVATE void bcCalcOrig(Vpmg *thee) {
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:2547:17: warning: 'bcfl1sp' defined but not used [-Wunused-function]
 2547 | VPRIVATE double bcfl1sp(double size, double *apos, double charge,
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.c:1148:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function]
 1148 | VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee,
      |                 ^~~~~~~~~~~~~~~~~~
[  5%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmgp.c: In function 'Vpmgp_size':
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable]
  204 |     int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot;
      |                                                                                       ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[  5%] Built target apbs_mg
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[  7%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL':
/builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:2683:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable]
 2683 |     APOLparm *apolparm = VNULL;
      |               ^~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from /usr/include/maloc/maloc_base.h:82,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:57:
In function 'strncpy',
    inlined from 'NOsh_parsePBAM' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:3139:3:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1000 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parsePBSAM' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:3268:3:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1000 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseAPOLAR' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:1348:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:582:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseELEC' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:1222:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:577:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_MESH' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:953:9,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:1007:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_CHARGE' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:918:5,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:1005:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_POTENTIAL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:872:5,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:1003:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_KAPPA' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:827:5,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:1001:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:772:5,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:999:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:776:5,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:999:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:780:5,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:999:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:723:13,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:997:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:701:13,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:997:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:659:9,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:995:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:640:9,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:995:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:621:9,
    inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:995:13,
    inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
[  8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o
[  9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o
[ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient':
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:305:17: warning: unused variable 'name' [-Wunused-variable]
  305 |     const char* name = "randorient";
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c: In function 'PBAMparm_parse3Dmap':
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:373:10: warning: unused variable 'tok' [-Wunused-variable]
  373 |     char tok[VMAX_BUFSIZE];
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:372:17: warning: unused variable 'name' [-Wunused-variable]
  372 |     const char* name = "3dmap";
      |                 ^~~~
In file included from /usr/include/string.h:535,
                 from /usr/include/maloc/maloc_base.h:82,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:68,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:57:
In function 'strncpy',
    inlined from 'PBAMparm_parseRunType' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:282:7:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseRunName' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:297:7:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseUnits' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:344:7:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseTermcombine' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:452:7:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:400:7:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:408:7:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseXYZ' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:656:8:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseDiff' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:500:8:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:563:9:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.c:573:11:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable]
   79 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c: In function 'PBSAMparm_parseMSMS':
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c:183:13: warning: unused variable 'td' [-Wunused-variable]
  183 |         int td;
      |             ^~
In file included from /usr/include/string.h:535,
                 from /usr/include/maloc/maloc_base.h:82,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:68,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c:57:
In function 'strncpy',
    inlined from 'PBSAMparm_parseSurf' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c:174:8:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBSAMparm_parseImat' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c:211:8:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBSAMparm_parseExp' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.c:226:8:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o
In file included from /usr/include/string.h:535,
                 from /usr/include/maloc/maloc_base.h:82,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/pbeparm.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/pbeparm.c:57:
In function 'strncpy',
    inlined from 'PBEparm_parseWRITE' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbeparm.c:1163:9:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'PBEparm_parseWRITEMAT' at /builddir/build/BUILD/apbs-3.0.0/src/generic/pbeparm.c:1204:5:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c: In function 'BEMparm_ctor2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable]
   79 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c: In function 'BEMparm_check':
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |                                    ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |                      ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c: In function 'BEMparm_copy':
/builddir/build/BUILD/apbs-3.0.0/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable]
  176 |     int i;
      |         ^
[ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable]
   79 |     int i;
      |         ^
[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o
[ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'VaccSurf_dtor':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable]
  841 |     Vmem *mem;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable]
 1104 |     double e, e2, e3, e4, e5;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'Vacc_atomdSASA':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable]
 1338 |     time_t ts;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable]
 1335 |     VaccSurf *ref;
      |               ^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable]
 1395 |     VaccSurf *ref;
      |               ^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable]
 1392 |     double *temp_Pos, tRad;
      |                       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable]
 1391 |     int iatom;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable]
 1454 |     VaccSurf *ref;
      |               ^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable]
 1451 |     double *temp_Pos, tRad;
      |                       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable]
 1450 |     int iatom;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable]
 1584 |     int npts[3];
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c: In function 'Vacc_wcaForceAtom':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable]
 1807 |     time_t ts;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable]
 1764 |         npts[3],
      |         ^~~~
[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c: In function 'Valist_readPQR':
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable]
  618 |     char chs[VMAX_BUFSIZE];
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c: In function 'Valist_readXML':
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized]
  834 |                 Vatom_setRadius(nextAtom, radius);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized]
  833 |                 Vatom_setCharge(nextAtom, charge);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized]
  831 |                 pos[0] = x; pos[1] = y; pos[2] = z;
      |                                         ~~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c:736:15: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
  736 |     double x, y, z, charge, radius, dtmp;
      |               ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/valist.c:736:12: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized]
  736 |     double x, y, z, charge, radius, dtmp;
      |            ^
[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o
[ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o
[ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o
[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o
[ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o
[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.c: In function 'Vparam_readXMLFile':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized]
  389 |                 tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData));
      |                                                                    ~^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized]
  309 |     int i, ires, natoms, nalloc, ralloc;
      |                  ^~~~~~
[ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                               ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                       ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |             ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c: In function 'Vgreen_coulomb':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable]
  264 |     int iatom, ipos;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                               ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                       ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |             ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                             ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                         ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                     ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                 ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                   ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable]
  261 |     Vatom *atom;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable]
  316 |     double *q, qtemp;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable]
  316 |     double *q, qtemp;
      |             ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c: In function 'Vgreen_coulombD':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable]
  368 |     int iatom, ipos;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable]
  367 |     double *q, qtemp;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable]
  367 |     double *q, qtemp;
      |             ^
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                            ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                        ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                    ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                ^~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                        ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                 ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                   ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable]
  365 |     Vatom *atom;
      |            ^~~~
At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function]
  525 | VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar,
      |              ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function]
  505 | VPRIVATE int treecleanup(Vgreen *thee) {
      |              ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function]
  425 | VPRIVATE int treesetup(Vgreen *thee) {
      |              ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 27%] Built target apbs_generic
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 28%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c: In function 'VbuildA':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:66:5: note: in expansion of macro 'MAT2'
   66 |     MAT2(ac, *nx * *ny * *nz, 14);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c: In function 'VbuildA_fv':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:167:5: note: in expansion of macro 'MAT3'
  167 |     MAT3(gzcf, *nx, *ny,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:166:5: note: in expansion of macro 'MAT3'
  166 |     MAT3(gycf, *nx, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:165:5: note: in expansion of macro 'MAT3'
  165 |     MAT3(gxcf, *ny, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:164:5: note: in expansion of macro 'MAT3'
  164 |     MAT3(  oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:163:5: note: in expansion of macro 'MAT3'
  163 |     MAT3(  oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3'
  162 |     MAT3(  uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3'
  161 |     MAT3(a3cf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3'
  160 |     MAT3(a2cf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3'
  159 |     MAT3(a1cf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3'
  158 |     MAT3(  oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3'
  157 |     MAT3( ccf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3'
  156 |     MAT3(  cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3'
  155 |     MAT3( fcf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3'
  154 |     MAT3(  fc, *nx, *ny, *nz);
      |     ^~~~
[ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c: In function 'Vbuildband':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:65:5: note: in expansion of macro 'MAT2'
   65 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c: In function 'Vbuildband1_7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:133:5: note: in expansion of macro 'MAT3'
  133 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:132:5: note: in expansion of macro 'MAT3'
  132 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:131:5: note: in expansion of macro 'MAT3'
  131 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:130:5: note: in expansion of macro 'MAT3'
  130 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT2'
  128 |     MAT2(acB, *lda, *ny-1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c: In function 'Vbuildband1_27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:213:5: note: in expansion of macro 'MAT3'
  213 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:212:5: note: in expansion of macro 'MAT3'
  212 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:211:5: note: in expansion of macro 'MAT3'
  211 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:210:5: note: in expansion of macro 'MAT3'
  210 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3'
  208 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3'
  207 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3'
  206 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3'
  205 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3'
  203 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3'
  202 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3'
  200 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:199:5: note: in expansion of macro 'MAT3'
  199 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3'
  198 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3'
  197 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT2'
  195 |     MAT2(acB, *lda, *ny-1);
      |     ^~~~
[ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c: In function 'VbuildG':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:64:5: note: in expansion of macro 'MAT2'
   64 |     MAT2(  ac, *nxc * *nyc * *nzc, 27);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:63:5: note: in expansion of macro 'MAT2'
   63 |     MAT2(acFF, *nxf * *nyf * *nzf, 27);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:62:5: note: in expansion of macro 'MAT2'
   62 |     MAT2(pcFF, *nxc * *nyc * *nzc, 27);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c: In function 'VbuildG_1':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:216:5: note: in expansion of macro 'MAT3'
  216 |     MAT3(dPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:215:5: note: in expansion of macro 'MAT3'
  215 |     MAT3(dPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:214:5: note: in expansion of macro 'MAT3'
  214 |     MAT3(dPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:213:5: note: in expansion of macro 'MAT3'
  213 |     MAT3(dPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:212:5: note: in expansion of macro 'MAT3'
  212 |     MAT3( dPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3'
  211 |     MAT3( dPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3'
  210 |     MAT3( dPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3'
  209 |     MAT3( dPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3'
  208 |     MAT3( dPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3'
  206 |     MAT3(uPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3'
  205 |     MAT3(uPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3'
  204 |     MAT3(uPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3'
  203 |     MAT3(uPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:202:5: note: in expansion of macro 'MAT3'
  202 |     MAT3( uPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3'
  201 |     MAT3( uPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3'
  200 |     MAT3( uPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3'
  199 |     MAT3( uPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3'
  198 |     MAT3( uPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3'
  196 |     MAT3(oPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3'
  195 |     MAT3(oPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3'
  194 |     MAT3(oPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3'
  193 |     MAT3(oPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:192:5: note: in expansion of macro 'MAT3'
  192 |     MAT3( oPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3'
  191 |     MAT3( oPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3'
  190 |     MAT3( oPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3'
  189 |     MAT3( oPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3'
  188 |     MAT3( oPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3'
  186 |     MAT3(XuSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3'
  185 |     MAT3(XuSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3'
  184 |     MAT3(XuNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3'
  183 |     MAT3(XuNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:182:5: note: in expansion of macro 'MAT3'
  182 |     MAT3( XuS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3'
  181 |     MAT3( XuN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3'
  180 |     MAT3( XuW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3'
  179 |     MAT3( XuE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3'
  177 |     MAT3(XoNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3'
  176 |     MAT3(XoNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3'
  174 |     MAT3( XuC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3'
  172 |     MAT3( XoN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3'
  171 |     MAT3( XoE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:170:5: note: in expansion of macro 'MAT3'
  170 |     MAT3( XoC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:168:5: note: in expansion of macro 'MAT3'
  168 |     MAT3(  oC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:164:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable]
  164 |     int nxm1, nym1, nzm1;
      |                     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:164:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable]
  164 |     int nxm1, nym1, nzm1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:164:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable]
  164 |     int nxm1, nym1, nzm1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:163:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
  163 |     int iim1, iip1, jjm1, jjp1, kkm1, kkp1;
      |                                 ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c: In function 'VbuildG_7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:532:5: note: in expansion of macro 'MAT3'
  532 |     MAT3(dPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:531:5: note: in expansion of macro 'MAT3'
  531 |     MAT3(dPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:530:5: note: in expansion of macro 'MAT3'
  530 |     MAT3(dPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:529:5: note: in expansion of macro 'MAT3'
  529 |     MAT3(dPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:528:5: note: in expansion of macro 'MAT3'
  528 |     MAT3( dPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3'
  527 |     MAT3( dPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3'
  526 |     MAT3( dPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3'
  525 |     MAT3( dPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3'
  524 |     MAT3( dPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3'
  522 |     MAT3(uPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3'
  521 |     MAT3(uPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3'
  520 |     MAT3(uPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3'
  519 |     MAT3(uPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:518:5: note: in expansion of macro 'MAT3'
  518 |     MAT3( uPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3'
  517 |     MAT3( uPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3'
  516 |     MAT3( uPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3'
  515 |     MAT3( uPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3'
  514 |     MAT3( uPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3'
  512 |     MAT3(oPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3'
  511 |     MAT3(oPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3'
  510 |     MAT3(oPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3'
  509 |     MAT3(oPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:508:5: note: in expansion of macro 'MAT3'
  508 |     MAT3( oPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3'
  507 |     MAT3( oPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3'
  506 |     MAT3( oPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3'
  505 |     MAT3( oPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3'
  504 |     MAT3( oPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3'
  502 |     MAT3(XuSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3'
  501 |     MAT3(XuSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3'
  500 |     MAT3(XuNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3'
  499 |     MAT3(XuNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:498:5: note: in expansion of macro 'MAT3'
  498 |     MAT3( XuS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3'
  497 |     MAT3( XuN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3'
  496 |     MAT3( XuW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3'
  495 |     MAT3( XuE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3'
  494 |     MAT3( XuC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3'
  492 |     MAT3(XoNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3'
  491 |     MAT3(XoNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3'
  490 |     MAT3( XoN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3'
  489 |     MAT3( XoE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:488:5: note: in expansion of macro 'MAT3'
  488 |     MAT3( XoC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3'
  486 |     MAT3(  uC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3'
  484 |     MAT3(  oN, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3'
  483 |     MAT3(  oE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:482:5: note: in expansion of macro 'MAT3'
  482 |     MAT3(  oC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:473:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable]
  473 |     int nxm1, nym1, nzm1;
      |                     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:473:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable]
  473 |     int nxm1, nym1, nzm1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:473:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable]
  473 |     int nxm1, nym1, nzm1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:472:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
  472 |     int kkm1, kkp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:469:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
  469 |     int  km1,  kp1,  km2,  kp2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:469:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
  469 |     int  km1,  kp1,  km2,  kp2;
      |                      ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:468:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable]
  468 |     int  jm1,  jp1,  jm2,  jp2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:467:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable]
  467 |     int  im1,  ip1,  im2,  ip2;
      |                            ^~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c: In function 'VbuildG_27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1380:5: note: in expansion of macro 'MAT3'
 1380 |     MAT3(dPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1379:5: note: in expansion of macro 'MAT3'
 1379 |     MAT3(dPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1378:5: note: in expansion of macro 'MAT3'
 1378 |     MAT3(dPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1377:5: note: in expansion of macro 'MAT3'
 1377 |     MAT3(dPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1376:5: note: in expansion of macro 'MAT3'
 1376 |     MAT3( dPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3'
 1375 |     MAT3( dPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3'
 1374 |     MAT3( dPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3'
 1373 |     MAT3( dPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3'
 1372 |     MAT3( dPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3'
 1370 |     MAT3(uPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3'
 1369 |     MAT3(uPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3'
 1368 |     MAT3(uPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3'
 1367 |     MAT3(uPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1366:5: note: in expansion of macro 'MAT3'
 1366 |     MAT3( uPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3'
 1365 |     MAT3( uPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3'
 1364 |     MAT3( uPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3'
 1363 |     MAT3( uPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3'
 1362 |     MAT3( uPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3'
 1360 |     MAT3(oPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3'
 1359 |     MAT3(oPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3'
 1358 |     MAT3(oPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3'
 1357 |     MAT3(oPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1356:5: note: in expansion of macro 'MAT3'
 1356 |     MAT3( oPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3'
 1355 |     MAT3( oPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3'
 1354 |     MAT3( oPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3'
 1353 |     MAT3( oPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3'
 1352 |     MAT3( oPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3'
 1350 |     MAT3(XuSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3'
 1349 |     MAT3(XuSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3'
 1348 |     MAT3(XuNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3'
 1347 |     MAT3(XuNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1346:5: note: in expansion of macro 'MAT3'
 1346 |     MAT3( XuS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3'
 1345 |     MAT3( XuN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3'
 1344 |     MAT3( XuW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3'
 1343 |     MAT3( XuE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3'
 1342 |     MAT3( XuC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3'
 1340 |     MAT3(XoNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3'
 1339 |     MAT3(XoNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3'
 1338 |     MAT3( XoN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3'
 1337 |     MAT3( XoE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1336:5: note: in expansion of macro 'MAT3'
 1336 |     MAT3( XoC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3'
 1334 |     MAT3( uSW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3'
 1333 |     MAT3( uSE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3'
 1332 |     MAT3( uNW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3'
 1331 |     MAT3( uNE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1330:5: note: in expansion of macro 'MAT3'
 1330 |     MAT3(  uS, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3'
 1329 |     MAT3(  uN, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3'
 1328 |     MAT3(  uW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3'
 1327 |     MAT3(  uE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3'
 1326 |     MAT3(  uC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3'
 1324 |     MAT3( oNW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3'
 1323 |     MAT3( oNE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3'
 1322 |     MAT3(  oN, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3'
 1321 |     MAT3(  oE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1320:5: note: in expansion of macro 'MAT3'
 1320 |     MAT3(  oC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1277:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable]
 1277 |     int nxm1, nym1, nzm1;
      |                     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1277:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable]
 1277 |     int nxm1, nym1, nzm1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1277:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable]
 1277 |     int nxm1, nym1, nzm1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1276:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
 1276 |     int kkm1, kkp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1273:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
 1273 |     int  km1,  kp1,  km2,  kp2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildGd.c:1273:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
 1273 |     int  km1,  kp1,  km2,  kp2;
      |                      ^~~
[ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildP':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:67:5: note: in expansion of macro 'MAT2'
   67 |     MAT2(ac, *nxf * *nyf * *nzf, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:66:5: note: in expansion of macro 'MAT2'
   66 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildP_trilin':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:101:5: note: in expansion of macro 'MAT2'
  101 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildPb_trilin':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:163:5: note: in expansion of macro 'MAT3'
  163 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:162:5: note: in expansion of macro 'MAT3'
  162 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:161:5: note: in expansion of macro 'MAT3'
  161 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:160:5: note: in expansion of macro 'MAT3'
  160 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3'
  158 |     MAT3( dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3'
  157 |     MAT3( dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3'
  156 |     MAT3( dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3'
  155 |     MAT3( dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:154:5: note: in expansion of macro 'MAT3'
  154 |     MAT3( dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3'
  152 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3'
  151 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3'
  150 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3'
  149 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3'
  147 |     MAT3( uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3'
  146 |     MAT3( uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3'
  145 |     MAT3( uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3'
  144 |     MAT3( uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:143:5: note: in expansion of macro 'MAT3'
  143 |     MAT3( uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3'
  141 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3'
  140 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3'
  139 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3'
  138 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3'
  136 |     MAT3( oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3'
  135 |     MAT3( oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3'
  134 |     MAT3( oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3'
  133 |     MAT3( oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:132:5: note: in expansion of macro 'MAT3'
  132 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildP_op7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:212:5: note: in expansion of macro 'MAT2'
  212 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:211:5: note: in expansion of macro 'MAT2'
  211 |     MAT2(ac, *nxf * *nyf * *nzf, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildPb_op7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:287:5: note: in expansion of macro 'MAT3'
  287 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:286:5: note: in expansion of macro 'MAT3'
  286 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:285:5: note: in expansion of macro 'MAT3'
  285 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:284:5: note: in expansion of macro 'MAT3'
  284 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:283:5: note: in expansion of macro 'MAT3'
  283 |     MAT3( dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3'
  282 |     MAT3( dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3'
  281 |     MAT3( dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3'
  280 |     MAT3( dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3'
  279 |     MAT3( dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3'
  278 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3'
  277 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3'
  276 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3'
  275 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3'
  274 |     MAT3( uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3'
  273 |     MAT3( uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3'
  272 |     MAT3( uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3'
  271 |     MAT3( uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3'
  270 |     MAT3( uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3'
  269 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3'
  268 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3'
  267 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3'
  266 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3'
  265 |     MAT3( oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3'
  264 |     MAT3( oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3'
  263 |     MAT3( oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3'
  262 |     MAT3( oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3'
  261 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3'
  260 |     MAT3(  uC, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3'
  259 |     MAT3(  oN, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3'
  258 |     MAT3(  oE, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3'
  257 |     MAT3(  oC, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:255:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable]
  255 |     double won, half, quarter, eighth;
      |                                ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:255:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable]
  255 |     double won, half, quarter, eighth;
      |                       ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:255:17: warning: variable 'half' set but not used [-Wunused-but-set-variable]
  255 |     double won, half, quarter, eighth;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:253:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable]
  253 |     int kkm1, kkp1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:253:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
  253 |     int kkm1, kkp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:252:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable]
  252 |     int jjm1, jjp1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:252:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable]
  252 |     int jjm1, jjp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:251:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable]
  251 |     int iim1, iip1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:251:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable]
  251 |     int iim1, iip1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:250:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
  250 |     int  km2,  kp2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:250:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
  250 |     int  km2,  kp2;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:248:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable]
  248 |     int  jm2,  jp2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:248:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable]
  248 |     int  jm2,  jp2;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:246:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable]
  246 |     int  im2,  ip2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:246:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable]
  246 |     int  im2,  ip2;
      |          ^~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildP_op27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:728:5: note: in expansion of macro 'MAT2'
  728 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:727:5: note: in expansion of macro 'MAT2'
  727 |     MAT2(ac, *nxf * *nyf * *nzf, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c: In function 'VbuildPb_op27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:818:7: note: in expansion of macro 'MAT3'
  818 |       MAT3(dPSW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:817:7: note: in expansion of macro 'MAT3'
  817 |       MAT3(dPSE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:816:7: note: in expansion of macro 'MAT3'
  816 |       MAT3(dPNW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:815:7: note: in expansion of macro 'MAT3'
  815 |       MAT3(dPNE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:814:7: note: in expansion of macro 'MAT3'
  814 |       MAT3( dPW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3'
  813 |       MAT3( dPE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3'
  812 |       MAT3( dPS, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3'
  811 |       MAT3( dPN, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3'
  810 |       MAT3( dPC, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3'
  809 |       MAT3(uPSW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3'
  808 |       MAT3(uPSE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3'
  807 |       MAT3(uPNW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3'
  806 |       MAT3(uPNE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3'
  805 |       MAT3( uPW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3'
  804 |       MAT3( uPE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3'
  803 |       MAT3( uPS, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3'
  802 |       MAT3( uPN, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3'
  801 |       MAT3( uPC, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3'
  800 |       MAT3(oPSW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3'
  799 |       MAT3(oPSE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3'
  798 |       MAT3(oPNW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3'
  797 |       MAT3(oPNE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3'
  796 |       MAT3( oPW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3'
  795 |       MAT3( oPE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3'
  794 |       MAT3( oPS, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3'
  793 |       MAT3( oPN, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3'
  792 |       MAT3( oPC, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3'
  791 |       MAT3( uSW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3'
  790 |       MAT3( uSE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3'
  789 |       MAT3( uNW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3'
  788 |       MAT3( uNE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3'
  787 |       MAT3(  uS, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3'
  786 |       MAT3(  uN, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3'
  785 |       MAT3(  uW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3'
  784 |       MAT3(  uE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3'
  783 |       MAT3( oNW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3'
  782 |       MAT3( oNE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3'
  781 |       MAT3(  uC, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3'
  780 |       MAT3(  oN, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3'
  779 |       MAT3(  oE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3'
  778 |       MAT3(  oC, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:776:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable]
  776 |       double won, half, quarter, eighth;
      |                                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:776:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable]
  776 |       double won, half, quarter, eighth;
      |                         ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:776:19: warning: variable 'half' set but not used [-Wunused-but-set-variable]
  776 |       double won, half, quarter, eighth;
      |                   ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:774:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable]
  774 |       int kkm1, kkp1;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:774:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
  774 |       int kkm1, kkp1;
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:773:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable]
  773 |       int jjm1, jjp1;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:773:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable]
  773 |       int jjm1, jjp1;
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:772:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable]
  772 |       int iim1, iip1;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:772:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable]
  772 |       int iim1, iip1;
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:771:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
  771 |       int  km2,  kp2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:771:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
  771 |       int  km2,  kp2;
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:769:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable]
  769 |       int  jm2,  jp2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:769:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable]
  769 |       int  jm2,  jp2;
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:767:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable]
  767 |       int  im2,  ip2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/buildPd.c:767:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable]
  767 |       int  im2,  ip2;
      |            ^~~
[ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/cgd.c: In function 'Vcghs':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/cgd.c:99:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized]
   99 |           beta = rhok2 / rhok1;
      |                  ~~~~~~^~~~~~~
[ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c: In function 'Vgsrb':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:67:5: note: in expansion of macro 'MAT2'
   67 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c: In function 'Vgsrb7x':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:116:5: note: in expansion of macro 'MAT3'
  116 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:115:5: note: in expansion of macro 'MAT3'
  115 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:114:5: note: in expansion of macro 'MAT3'
  114 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:113:5: note: in expansion of macro 'MAT3'
  113 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3'
  111 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3'
  111 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3'
  111 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3'
  110 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3'
  110 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3'
  110 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3'
  109 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3'
  109 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3'
  109 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3'
  108 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:107:5: note: in expansion of macro 'MAT3'
  107 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3'
  106 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c: In function 'Vgsrb27x':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:208:5: note: in expansion of macro 'MAT3'
  208 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:207:5: note: in expansion of macro 'MAT3'
  207 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:206:5: note: in expansion of macro 'MAT3'
  206 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:205:5: note: in expansion of macro 'MAT3'
  205 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:204:5: note: in expansion of macro 'MAT3'
  204 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3'
  203 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3'
  202 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3'
  201 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3'
  199 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3'
  198 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3'
  196 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:195:5: note: in expansion of macro 'MAT3'
  195 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3'
  194 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3'
  193 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3'
  191 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3'
  191 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3'
  191 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3'
  190 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3'
  190 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3'
  190 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3'
  189 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3'
  189 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3'
  189 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3'
  188 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:187:5: note: in expansion of macro 'MAT3'
  187 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3'
  186 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:182:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable]
  182 |     int istep;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:180:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable]
  180 |     int i2, j2, k2;
      |                 ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:180:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable]
  180 |     int i2, j2, k2;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:180:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable]
  180 |     int i2, j2, k2;
      |         ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:179:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable]
  179 |     int i1, j1, k1;
      |                 ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:179:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable]
  179 |     int i1, j1, k1;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/gsd.c:179:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable]
  179 |     int i1, j1, k1;
      |         ^~
[ 35%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.h:55,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmatvec7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:87:5: note: in expansion of macro 'MAT2'
   87 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmatvec7_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:112:5: note: in expansion of macro 'MAT3'
  112 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:111:5: note: in expansion of macro 'MAT3'
  111 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:110:5: note: in expansion of macro 'MAT3'
  110 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:109:5: note: in expansion of macro 'MAT3'
  109 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:108:5: note: in expansion of macro 'MAT3'
  108 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3'
  107 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3'
  106 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmatvec27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:139:5: note: in expansion of macro 'MAT2'
  139 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmatvec27_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:184:5: note: in expansion of macro 'MAT3'
  184 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:183:5: note: in expansion of macro 'MAT3'
  183 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:182:5: note: in expansion of macro 'MAT3'
  182 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:181:5: note: in expansion of macro 'MAT3'
  181 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:180:5: note: in expansion of macro 'MAT3'
  180 |     MAT3(uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3'
  179 |     MAT3(uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3'
  178 |     MAT3(uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3'
  177 |     MAT3(uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3'
  176 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3'
  174 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3'
  173 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3'
  172 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3'
  171 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:170:5: note: in expansion of macro 'MAT3'
  170 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3'
  168 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3'
  167 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3'
  166 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmatvec7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:263:5: note: in expansion of macro 'MAT2'
  263 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:292:5: note: in expansion of macro 'MAT3'
  292 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:291:5: note: in expansion of macro 'MAT3'
  291 |     MAT3( y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:290:5: note: in expansion of macro 'MAT3'
  290 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:289:5: note: in expansion of macro 'MAT3'
  289 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3'
  288 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3'
  288 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3'
  288 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3'
  287 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3'
  286 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3'
  285 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmatvec27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:322:5: note: in expansion of macro 'MAT2'
  322 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:370:5: note: in expansion of macro 'MAT3'
  370 |     MAT3( w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:369:5: note: in expansion of macro 'MAT3'
  369 |     MAT3(  y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:368:5: note: in expansion of macro 'MAT3'
  368 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:367:5: note: in expansion of macro 'MAT3'
  367 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3'
  366 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3'
  366 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3'
  366 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3'
  365 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3'
  364 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3'
  363 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3'
  362 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3'
  361 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3'
  360 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3'
  359 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3'
  358 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3'
  357 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3'
  356 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3'
  355 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3'
  354 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3'
  353 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmresid7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:451:5: note: in expansion of macro 'MAT2'
  451 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmresid7_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:476:5: note: in expansion of macro 'MAT3'
  476 |     MAT3(r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:475:5: note: in expansion of macro 'MAT3'
  475 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:474:5: note: in expansion of macro 'MAT3'
  474 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:473:5: note: in expansion of macro 'MAT3'
  473 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:472:5: note: in expansion of macro 'MAT3'
  472 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3'
  471 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3'
  470 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3'
  469 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmresid27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:503:5: note: in expansion of macro 'MAT2'
  503 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vmresid27_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:550:5: note: in expansion of macro 'MAT3'
  550 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:549:5: note: in expansion of macro 'MAT3'
  549 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:548:5: note: in expansion of macro 'MAT3'
  548 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:547:5: note: in expansion of macro 'MAT3'
  547 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:546:5: note: in expansion of macro 'MAT3'
  546 |     MAT3(uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3'
  545 |     MAT3(uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3'
  544 |     MAT3(uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3'
  543 |     MAT3(uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3'
  542 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3'
  540 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3'
  539 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3'
  538 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:537:5: note: in expansion of macro 'MAT3'
  537 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:536:5: note: in expansion of macro 'MAT3'
  536 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3'
  534 |     MAT3(r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3'
  533 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3'
  532 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:531:5: note: in expansion of macro 'MAT3'
  531 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmresid7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:623:5: note: in expansion of macro 'MAT2'
  623 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmresid7_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:650:5: note: in expansion of macro 'MAT3'
  650 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:649:5: note: in expansion of macro 'MAT3'
  649 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:648:5: note: in expansion of macro 'MAT3'
  648 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:647:5: note: in expansion of macro 'MAT3'
  647 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:646:5: note: in expansion of macro 'MAT3'
  646 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3'
  645 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3'
  645 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3'
  645 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3'
  644 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3'
  643 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3'
  642 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmresid27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:681:5: note: in expansion of macro 'MAT2'
  681 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vnmresid27_1s':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:727:5: note: in expansion of macro 'MAT3'
  727 |     MAT3( w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:726:5: note: in expansion of macro 'MAT3'
  726 |     MAT3(  r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:725:5: note: in expansion of macro 'MAT3'
  725 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:724:5: note: in expansion of macro 'MAT3'
  724 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:723:5: note: in expansion of macro 'MAT3'
  723 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3'
  722 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3'
  721 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3'
  720 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3'
  719 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3'
  718 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3'
  717 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3'
  716 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3'
  715 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3'
  714 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3'
  713 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3'
  712 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3'
  711 |     MAT3( fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3'
  710 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3'
  710 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3'
  710 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3'
  709 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vrestrc':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:786:5: note: in expansion of macro 'MAT2'
  786 |     MAT2(pc, *nxc * *nyc * *nzc, 1 );
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vrestrc2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:852:5: note: in expansion of macro 'MAT3'
  852 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:851:5: note: in expansion of macro 'MAT3'
  851 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:850:5: note: in expansion of macro 'MAT3'
  850 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:849:5: note: in expansion of macro 'MAT3'
  849 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3'
  847 |     MAT3(dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3'
  846 |     MAT3(dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3'
  845 |     MAT3(dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:844:5: note: in expansion of macro 'MAT3'
  844 |     MAT3(dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:843:5: note: in expansion of macro 'MAT3'
  843 |     MAT3(dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3'
  841 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3'
  840 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3'
  839 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:838:5: note: in expansion of macro 'MAT3'
  838 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3'
  836 |     MAT3(uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3'
  835 |     MAT3(uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3'
  834 |     MAT3(uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:833:5: note: in expansion of macro 'MAT3'
  833 |     MAT3(uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:832:5: note: in expansion of macro 'MAT3'
  832 |     MAT3(uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3'
  830 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3'
  829 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3'
  828 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:827:5: note: in expansion of macro 'MAT3'
  827 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3'
  825 |     MAT3(oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3'
  824 |     MAT3(oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3'
  823 |     MAT3(oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:822:5: note: in expansion of macro 'MAT3'
  822 |     MAT3(oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:821:5: note: in expansion of macro 'MAT3'
  821 |     MAT3(oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3'
  819 |     MAT3(xout, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3'
  818 |     MAT3(xin, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:816:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable]
  816 |     double dimfac;
      |            ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.h:55,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'VinterpPMG':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:920:5: note: in expansion of macro 'MAT2'
  920 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'VinterpPMG2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:982:5: note: in expansion of macro 'MAT3'
  982 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:981:5: note: in expansion of macro 'MAT3'
  981 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:980:5: note: in expansion of macro 'MAT3'
  980 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:979:5: note: in expansion of macro 'MAT3'
  979 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3'
  977 |     MAT3( dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3'
  976 |     MAT3( dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3'
  975 |     MAT3( dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:974:5: note: in expansion of macro 'MAT3'
  974 |     MAT3( dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:973:5: note: in expansion of macro 'MAT3'
  973 |     MAT3( dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3'
  971 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3'
  970 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3'
  969 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:968:5: note: in expansion of macro 'MAT3'
  968 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3'
  966 |     MAT3( uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3'
  965 |     MAT3( uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3'
  964 |     MAT3( uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:963:5: note: in expansion of macro 'MAT3'
  963 |     MAT3( uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:962:5: note: in expansion of macro 'MAT3'
  962 |     MAT3( uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3'
  960 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3'
  959 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3'
  958 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:957:5: note: in expansion of macro 'MAT3'
  957 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3'
  955 |     MAT3( oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3'
  954 |     MAT3( oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3'
  953 |     MAT3( oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:952:5: note: in expansion of macro 'MAT3'
  952 |     MAT3( oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3'
  951 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3'
  951 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3'
  951 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3'
  949 |     MAT3(xout, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3'
  948 |     MAT3( xin, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c: In function 'Vextrac':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:1086:5: note: in expansion of macro 'MAT3'
 1086 |     MAT3(xout, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/matvecd.c:1085:5: note: in expansion of macro 'MAT3'
 1085 |     MAT3( xin, *nxf, *nyf, *nzf);
      |     ^~~~
[ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgcsd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgcsd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgcsd.c: In function 'Vmvcs':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgcsd.c:99:5: note: in expansion of macro 'MAT2'
   99 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgcsd.c:303:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized]
  303 |             Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgcsd.c:562:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |     } while (*iters<*itmax && (rsnrm/rsden) > *errtol);
      |                               ~~~~~~^~~~~~~
[ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c: In function 'Vmgdriv':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable]
   85 |     int ierror = 0;
      |         ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.h:62,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c: In function 'Vmgdriv2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:267:5: note: in expansion of macro 'MAT2'
  267 |     MAT2(iz, 50, nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:234:12: warning: unused variable 'tsolve' [-Wunused-variable]
  234 |     double tsolve  = 0.0;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:233:12: warning: unused variable 'tsetupc' [-Wunused-variable]
  233 |     double tsetupc = 0.0;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:232:12: warning: unused variable 'tsetupf' [-Wunused-variable]
  232 |     double tsetupf = 0.0;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:231:12: warning: unused variable 'oh' [-Wunused-variable]
  231 |     double oh      = 0.0;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:230:12: warning: unused variable 'bf' [-Wunused-variable]
  230 |     double bf      = 0.0;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'epsmac' [-Wunused-variable]
  226 |     double epsmac  = 0.0;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c: In function 'Vmgsz':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:655:26: warning: 'num_narrc_oper' may be used uninitialized [-Wmaybe-uninitialized]
  655 |             + (num_narrc + num_narrc_oper) * *narrc
      |               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:656:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized]
  653 |     *iretot = num_narr * *narr
      |               ~~~~~~~~~~~~~~~~
  654 |             + (num_nf    + num_nf_oper) * *nf
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  655 |             + (num_narrc + num_narrc_oper) * *narrc
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  656 |             + n_band
      |             ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgdrvd.c:654:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized]
  654 |             + (num_nf    + num_nf_oper) * *nf
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
[ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c: In function 'Vbuildops':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:83:5: note: in expansion of macro 'MAT2'
   83 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c: In function 'Vbuildstr':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:266:5: note: in expansion of macro 'MAT2'
  266 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c: In function 'Vbuildcopy0':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:628:5: note: in expansion of macro 'MAT3'
  628 |     MAT3( fcf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:627:5: note: in expansion of macro 'MAT3'
  627 |     MAT3( ccf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:626:5: note: in expansion of macro 'MAT3'
  626 |     MAT3( tcf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:625:5: note: in expansion of macro 'MAT3'
  625 |     MAT3(a3cf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:624:5: note: in expansion of macro 'MAT3'
  624 |     MAT3(a2cf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3'
  623 |     MAT3(a1cf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3'
  622 |     MAT3(gzcf, *nxf, *nyf,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3'
  621 |     MAT3(gycf, *nxf, *nzf,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3'
  620 |     MAT3(gxcf, *nyf, *nzf,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3'
  619 |     MAT3(  tc,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3'
  618 |     MAT3(  fc,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3'
  617 |     MAT3(  cc,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3'
  616 |     MAT3( a3c,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3'
  615 |     MAT3( a2c,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3'
  614 |     MAT3( a1c,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3'
  613 |     MAT3( gzc,  *nx,  *ny,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3'
  612 |     MAT3( gyc,  *nx,  *nz,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3'
  611 |     MAT3( gxc,  *ny,  *nz,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c: In function 'Vbuildalg':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgsubd.c:914:5: note: in expansion of macro 'MAT2'
  914 |     MAT2(iz, 50, *nlev);
      |     ^~~~
[ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxcopy':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:60:5: note: in expansion of macro 'MAT3'
   60 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:59:5: note: in expansion of macro 'MAT3'
   59 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxcopy_small':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:78:5: note: in expansion of macro 'MAT3'
   78 |     MAT3(y, *nx - 2, *ny - 2, *nz - 2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:77:5: note: in expansion of macro 'MAT3'
   77 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxcopy_large':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:99:5: note: in expansion of macro 'MAT3'
   99 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:98:5: note: in expansion of macro 'MAT3'
   98 |     MAT3(x, *nx - 2, *ny - 2, *nz - 2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxaxpy':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:117:5: note: in expansion of macro 'MAT3'
  117 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:116:5: note: in expansion of macro 'MAT3'
  116 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxnrm1':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:136:5: note: in expansion of macro 'MAT3'
  136 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxnrm2':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:157:5: note: in expansion of macro 'MAT3'
  157 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxdot':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:182:5: note: in expansion of macro 'MAT3'
  182 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:181:5: note: in expansion of macro 'MAT3'
  181 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vazeros':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:198:9: warning: unused variable 'nproc' [-Wunused-variable]
  198 |     int nproc = 1;
      |         ^~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'VfboundPMG':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:218:5: note: in expansion of macro 'MAT3'
  218 |     MAT3(gzc, *nx, *ny,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:217:5: note: in expansion of macro 'MAT3'
  217 |     MAT3(gyc, *nx, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:216:5: note: in expansion of macro 'MAT3'
  216 |     MAT3(gxc, *ny, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:215:5: note: in expansion of macro 'MAT3'
  215 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'VfboundPMG00':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:262:5: note: in expansion of macro 'MAT3'
  262 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vaxrand':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:295:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable]
  295 |     double xdum;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:293:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable]
  293 |     int n, i, ii, ipara, ivect, iflag;
      |                                 ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:293:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable]
  293 |     int n, i, ii, ipara, ivect, iflag;
      |                          ^~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vxscal':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:322:5: note: in expansion of macro 'MAT3'
  322 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vprtmatd':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:337:5: note: in expansion of macro 'MAT2'
  337 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vprtmatd7':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:370:5: note: in expansion of macro 'MAT3'
  370 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:369:5: note: in expansion of macro 'MAT3'
  369 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:368:5: note: in expansion of macro 'MAT3'
  368 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:367:5: note: in expansion of macro 'MAT3'
  367 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c: In function 'Vprtmatd27':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:415:5: note: in expansion of macro 'MAT3'
  415 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:414:5: note: in expansion of macro 'MAT3'
  414 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:413:5: note: in expansion of macro 'MAT3'
  413 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:412:5: note: in expansion of macro 'MAT3'
  412 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:411:5: note: in expansion of macro 'MAT3'
  411 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3'
  410 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3'
  409 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3'
  408 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3'
  407 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3'
  406 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3'
  405 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3'
  404 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3'
  403 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3'
  402 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
[ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mlinpckd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mlinpckd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mlinpckd.c: In function 'Vdpbsl':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mlinpckd.c:62:5: note: in expansion of macro 'MAT2'
   62 |     MAT2(abd, *lda, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mlinpckd.c: In function 'Vdpbfa':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mlinpckd.c:199:5: note: in expansion of macro 'MAT2'
  199 |     MAT2(abd, *lda, 1);
      |     ^~~~
[ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:96:9: warning: unused variable 'i' [-Wunused-variable]
   96 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:223:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable]
  223 |     int n, i, ii, ipara, ivect;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:223:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable]
  223 |     int n, i, ii, ipara, ivect;
      |                   ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:223:15: warning: unused variable 'ii' [-Wunused-variable]
  223 |     int n, i, ii, ipara, ivect;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:222:9: warning: unused variable 'iion' [-Wunused-variable]
  222 |     int iion;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:219:28: warning: unused variable 'fact' [-Wunused-variable]
  219 |     double argument, poly, fact;
      |                            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:219:22: warning: unused variable 'poly' [-Wunused-variable]
  219 |     double argument, poly, fact;
      |                      ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:219:12: warning: unused variable 'argument' [-Wunused-variable]
  219 |     double argument, poly, fact;
      |            ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:218:29: warning: unused variable 'am_pos' [-Wunused-variable]
  218 |     double am_zero, am_neg, am_pos;
      |                             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:218:21: warning: unused variable 'am_neg' [-Wunused-variable]
  218 |     double am_zero, am_neg, am_pos;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:217:18: warning: unused variable 'zu2' [-Wunused-variable]
  217 |     double zcf2, zu2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:217:12: warning: unused variable 'zcf2' [-Wunused-variable]
  217 |     double zcf2, zu2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:216:9: warning: unused variable 'ideg' [-Wunused-variable]
  216 |     int ideg;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c: In function 'Vdc_vec':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:345:9: warning: unused variable 'n' [-Wunused-variable]
  345 |     int n = *nx * *ny * *nz;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:344:9: warning: unused variable 'i' [-Wunused-variable]
  344 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c: In function 'Vdc_vecpmg':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:360:28: warning: unused variable 'fact' [-Wunused-variable]
  360 |     double argument, poly, fact;
      |                            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:360:22: warning: unused variable 'poly' [-Wunused-variable]
  360 |     double argument, poly, fact;
      |                      ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:357:9: warning: unused variable 'ideg' [-Wunused-variable]
  357 |     int ideg, iion;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:433:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable]
  433 |     int ipara, ivect;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:433:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable]
  433 |     int ipara, ivect;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:432:15: warning: unused variable 'ii' [-Wunused-variable]
  432 |     int n, i, ii;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:429:28: warning: unused variable 'fact' [-Wunused-variable]
  429 |     double argument, poly, fact;
      |                            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:429:22: warning: unused variable 'poly' [-Wunused-variable]
  429 |     double argument, poly, fact;
      |                      ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:429:12: warning: unused variable 'argument' [-Wunused-variable]
  429 |     double argument, poly, fact;
      |            ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:428:29: warning: unused variable 'am_pos' [-Wunused-variable]
  428 |     double am_zero, am_neg, am_pos;
      |                             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:428:21: warning: unused variable 'am_neg' [-Wunused-variable]
  428 |     double am_zero, am_neg, am_pos;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:427:18: warning: unused variable 'zu2' [-Wunused-variable]
  427 |     double zcf2, zu2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:427:12: warning: unused variable 'zcf2' [-Wunused-variable]
  427 |     double zcf2, zu2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:426:15: warning: unused variable 'iion' [-Wunused-variable]
  426 |     int ideg, iion;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mypdec.c:426:9: warning: unused variable 'ideg' [-Wunused-variable]
  426 |     int ideg, iion;
      |         ^~~~
[ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c:56:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c: In function 'Vfnewton':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2'
   77 |     MAT2( iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c: In function 'Vnewton':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2'
  187 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c: In function 'Vgetjac':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2'
  560 |     MAT2(iz, 50, 1);
      |     ^~~~
[ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c: In function 'Vnewdriv':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:86:9: warning: unused variable 'maxlev' [-Wunused-variable]
   86 |     int maxlev; /// @todo: Doc
      |         ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable]
   85 |     int ierror; /// @todo: Doc
      |         ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c: In function 'Vnewdriv2':
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:223:9: warning: unused variable 'i' [-Wunused-variable]
  223 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:221:12: warning: unused variable 'orsnrm_t' [-Wunused-variable]
  221 |     double orsnrm_t;
      |            ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:220:12: warning: unused variable 'rsden_t' [-Wunused-variable]
  220 |     double rsden_t;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:219:12: warning: unused variable 'rsnrm_t' [-Wunused-variable]
  219 |     double rsnrm_t;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:218:9: warning: unused variable 'iters_t' [-Wunused-variable]
  218 |     int iters_t;
      |         ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:217:9: warning: unused variable 'iok_t' [-Wunused-variable]
  217 |     int iok_t;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:215:9: warning: unused variable 'numlev' [-Wunused-variable]
  215 |     int numlev;
      |         ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:210:12: warning: unused variable 'tsolve' [-Wunused-variable]
  210 |     double tsolve;  /// @todo:  Doc
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:209:12: warning: unused variable 'tsetupc' [-Wunused-variable]
  209 |     double tsetupc; /// @todo:  Doc
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:208:12: warning: unused variable 'tsetupf' [-Wunused-variable]
  208 |     double tsetupf; /// @todo:  Doc
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:207:12: warning: unused variable 'oh' [-Wunused-variable]
  207 |     double oh;      /// @todo:  Doc
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:206:12: warning: unused variable 'bf' [-Wunused-variable]
  206 |     double bf;      /// @todo:  Doc
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:204:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable]
  204 |     double omegal;  /// @todo:  Doc
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/newdrvd.c:202:12: warning: unused variable 'epsmac' [-Wunused-variable]
  202 |     double epsmac;  /// @todo:  Doc
      |            ^~~~~~
[ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c: In function 'Vpower':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c:74:5: note: in expansion of macro 'MAT2'
   74 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c:71:9: warning: unused variable 'skipIters' [-Wunused-variable]
   71 |     int skipIters = 0;
      |         ^~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c: In function 'Vipower':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c:188:5: note: in expansion of macro 'MAT2'
  188 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c: In function 'Vmpower':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/powerd.c:311:5: note: in expansion of macro 'MAT2'
  311 |     MAT2(iz, 50, 1);
      |     ^~~~
[ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o
[ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/smoothd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c: In function 'Vfmvfas':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:79:5: note: in expansion of macro 'MAT2'
   79 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:74:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable]
   74 |     double errd;
      |            ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/smoothd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:55:
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c: In function 'Vmvfas':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:182:5: note: in expansion of macro 'MAT2'
  182 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:171:33: warning: unused variable 'ivariv' [-Wunused-variable]
  171 |     int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid;
      |                                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:359:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized]
  359 |             Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/pmgc/mgfasd.c:597:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized]
  597 |             if ((rsnrm / rsden) <= *errtol)
      |                 ~~~~~~~^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 48%] Built target apbs_pmgc
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 49%] Linking C shared library ../lib/libapbs.so
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 49%] Built target apbs
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 50%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'loadDielMaps':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  296 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  298 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  331 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  333 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  420 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  422 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  454 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  456 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initMG':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable]
 1234 |            iparm,
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'energyMG':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable]
 1584 |     MGparm *mgparm;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writematMG':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable]
 1803 |     char mxtype[3];
      |          ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printApolForce':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable]
 3485 |            scalar,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
 3484 |     double temp,
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable]
 4496 |            sav,         /**< @todo document */
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable]
 4495 |     double sasa,        /**< @todo document */
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable]
 4489 |     time_t ts;      /**< Temporary timing variable for debugging (PCE) */
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'forceAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable]
 4753 |            *apos;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable]
 4737 |                          time_t ts, ts_main, ts_sub;
      |                                              ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writematMG.part.0':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 1840 |         sprintf(outpath, "%s.%s", writematstem, "mat");
      |                              ^~                 ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writedataMG.part.0':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2676 |         sprintf(outpath, "%s.%s", writestem, "dxbin");
      |                              ^~              ~~~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2720 |                 sprintf(outpath, "%s.%s", writestem, "txt");
      |                                      ^~              ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2711 |                 sprintf(outpath, "%s.%s", writestem, "dx.gz");
      |                                      ^~              ~~~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2694 |                 sprintf(outpath, "%s.%s", writestem, "mcsf");
      |                                      ^~              ~~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2687 |                 sprintf(outpath, "%s.%s", writestem, "ucd");
      |                                      ^~              ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2701 |                 sprintf(outpath, "%s.%s", writestem, "grd");
      |                                      ^~              ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2666 |                 sprintf(outpath, "%s.%s", writestem, "dx");
      |                                      ^~              ~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writedataFlat':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2105 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writedataXML':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2363 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'returnEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2778 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2839 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printElecEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2904 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printApolEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2970 |         gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) +
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2971 |                                (apolparm->press*apolparm->sav) +
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2972 |                                (apolparm->wcaEnergy)));
      |                                ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4547:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized]
 4547 |         disp[0] = (x - center[0]);
      |                        ~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4516:12: note: 'center' declared here
 4516 |            center[3],   /**< @todo document */
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4548:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized]
 4548 |         disp[1] = (y - center[1]);
      |                        ~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4516:12: note: 'center' declared here
 4516 |            center[3],   /**< @todo document */
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4549:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized]
 4549 |         disp[2] = (z - center[2]);
      |                        ~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4516:12: note: 'center' declared here
 4516 |            center[3],   /**< @todo document */
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4590 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 3 of type 'char *'
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/apolparm.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData'
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4591 |         if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O");
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 3 of type 'char *'
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/apolparm.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData'
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 50%] Built target apbs_routines
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 51%] Building C object src/CMakeFiles/apbs-bin.dir/main.c.o
/builddir/build/BUILD/apbs-3.0.0/src/main.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/src/main.c:117:11: warning: unused variable 'gm' [-Wunused-variable]
  117 |     void *gm[NOSH_MAXMOL];
      |           ^~
/builddir/build/BUILD/apbs-3.0.0/src/main.c:116:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable]
  116 |     void *fetk[NOSH_MAXCALC];
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/main.c:96:18: warning: unused variable 'geoflowparm' [-Wunused-variable]
   96 |     GEOFLOWparm *geoflowparm = VNULL;
      |                  ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/main.c:92:14: warning: unused variable 'feparm' [-Wunused-variable]
   92 |     FEMparm *feparm = VNULL;
      |              ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/main.c:86:17: warning: unused variable 'te' [-Wunused-variable]
   86 |     clock_t ts, te;
      |                 ^~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/main.c:70:
/builddir/build/BUILD/apbs-3.0.0/src/main.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/main.c:70:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/main.c:70:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/main.c:70:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 52%] Building C object src/CMakeFiles/apbs-bin.dir/routines.c.o
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'loadDielMaps':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  296 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  298 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  331 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  333 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  420 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  422 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  454 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  456 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initMG':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable]
 1234 |            iparm,
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'energyMG':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable]
 1584 |     MGparm *mgparm;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writematMG':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable]
 1803 |     char mxtype[3];
      |          ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printApolForce':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable]
 3485 |            scalar,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
 3484 |     double temp,
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable]
 4496 |            sav,         /**< @todo document */
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable]
 4495 |     double sasa,        /**< @todo document */
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable]
 4489 |     time_t ts;      /**< Temporary timing variable for debugging (PCE) */
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'forceAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable]
 4753 |            *apos;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable]
 4737 |                          time_t ts, ts_main, ts_sub;
      |                                              ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writematMG.part.0':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 1840 |         sprintf(outpath, "%s.%s", writematstem, "mat");
      |                              ^~                 ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writedataMG.part.0':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2676 |         sprintf(outpath, "%s.%s", writestem, "dxbin");
      |                              ^~              ~~~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2720 |                 sprintf(outpath, "%s.%s", writestem, "txt");
      |                                      ^~              ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2711 |                 sprintf(outpath, "%s.%s", writestem, "dx.gz");
      |                                      ^~              ~~~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2694 |                 sprintf(outpath, "%s.%s", writestem, "mcsf");
      |                                      ^~              ~~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2687 |                 sprintf(outpath, "%s.%s", writestem, "ucd");
      |                                      ^~              ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2701 |                 sprintf(outpath, "%s.%s", writestem, "grd");
      |                                      ^~              ~~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2666 |                 sprintf(outpath, "%s.%s", writestem, "dx");
      |                                      ^~              ~~~~
In file included from /usr/include/stdio.h:900,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writedataFlat':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2105 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'writedataXML':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2363 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'returnEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2778 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2839 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printElecEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2904 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'printApolEnergy':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2970 |         gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) +
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2971 |                                (apolparm->press*apolparm->sav) +
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2972 |                                (apolparm->wcaEnergy)));
      |                                ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4547:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized]
 4547 |         disp[0] = (x - center[0]);
      |                        ~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4516:12: note: 'center' declared here
 4516 |            center[3],   /**< @todo document */
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4548:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized]
 4548 |         disp[1] = (y - center[1]);
      |                        ~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4516:12: note: 'center' declared here
 4516 |            center[3],   /**< @todo document */
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4549:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized]
 4549 |         disp[2] = (z - center[2]);
      |                        ~~~~~~^~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4516:12: note: 'center' declared here
 4516 |            center[3],   /**< @todo document */
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4590 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 3 of type 'char *'
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/apolparm.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData'
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4591 |         if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O");
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 3 of type 'char *'
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/apolparm.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData'
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
[ 54%] Linking C executable ../bin/apbs
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4590 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 3 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData'
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4591 |         if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O");
      |                                           ^
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 3 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData'
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 54%] Built target apbs-bin
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 55%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mgmesh.c:10:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mgmesh.c:10:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mgmesh.c:10:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mgmesh.c:10:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 56%] Linking C executable ../bin/mgmesh
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 56%] Built target mgmesh
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 57%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/smooth.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/smooth.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/smooth.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/smooth.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/smooth.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/smooth.c:169:15: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized]
  169 |     } else if (format == VDF_DXBIN) {
      |               ^
[ 58%] Linking C executable ../bin/smooth
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 58%] Built target smooth
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 60%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c:41:10: warning: unused variable 'format' [-Wunused-variable]
   41 |     char format[VMAX_BUFSIZE];
      |          ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c:13:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dxmath.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 61%] Linking C executable ../bin/dxmath
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 61%] Built target dxmath
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 62%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:81:13: warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized]
   81 |     mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:81:13: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx.c:81:13: warning: 'ny' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 63%] Linking C executable ../bin/mergedx
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 63%] Built target mergedx
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 64%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx2.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx2.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx2.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/mergedx2.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 65%] Linking C executable ../bin/mergedx2
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 65%] Built target mergedx2
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 67%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c:37:9: warning: unused variable 'inorm' [-Wunused-variable]
   37 |     int inorm;
      |         ^~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c:8:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/value.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 68%] Linking C executable ../bin/value
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 68%] Built target value
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 69%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/multivalue.c:46:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/multivalue.c:46:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/multivalue.c:46:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/multivalue.c:46:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 70%] Linking C executable ../bin/multivalue
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 70%] Built target multivalue
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 71%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:28:12: warning: unused variable 'grid' [-Wunused-variable]
   28 |     Vgrid *grid;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:58: warning: unused variable 'sum' [-Wunused-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                                          ^~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:51: warning: unused variable 'value' [-Wunused-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                                   ^~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:44: warning: unused variable 'pt' [-Wunused-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                            ^~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:38: warning: variable 'zmin' set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                      ^~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:32: warning: variable 'ymin' set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                ^~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:26: warning: variable 'xmin' set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                          ^~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:20: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                    ^~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:16: warning: variable 'hx' set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                ^~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:18:12: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:17:27: warning: unused variable 'k' [-Wunused-variable]
   17 |     int nx, ny, nz, i, j, k, itmp;
      |                           ^
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:17:24: warning: unused variable 'j' [-Wunused-variable]
   17 |     int nx, ny, nz, i, j, k, itmp;
      |                        ^
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:17:21: warning: unused variable 'i' [-Wunused-variable]
   17 |     int nx, ny, nz, i, j, k, itmp;
      |                     ^
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:8:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/benchmark.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 72%] Linking C executable ../bin/benchmark
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 72%] Built target benchmark
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 74%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:13:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from /usr/include/maloc/maloc_base.h:82,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:13:
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:298:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:305:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:312:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:322:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:329:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/similarity.c:452:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized]
  452 |         if (!readGrid(&mask2, mask2Path, format)) {
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Linking C executable ../bin/similarity
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 75%] Built target similarity
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 76%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from /usr/include/maloc/maloc_base.h:82,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:14:
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:123:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
    inlined from 'main' at /builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:133:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:292:5: warning: 'minG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  292 |     Vnm_print(1, "Min gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  293 |             minG2pt[0], minG2pt[1], minG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:292:5: warning: 'minG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:292:5: warning: 'minG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:284:5: warning: 'minSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 |     Vnm_print(1, "Min scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  285 |             minSpt[0], minSpt[1], minSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:284:5: warning: 'minSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:284:5: warning: 'minSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  288 |     Vnm_print(1, "Max gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  289 |             maxG2pt[0], maxG2pt[1], maxG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:280:5: warning: 'maxSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  280 |     Vnm_print(1, "Max scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  281 |             maxSpt[0], maxSpt[1], maxSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  288 |     Vnm_print(1, "Max gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  289 |             maxG2pt[0], maxG2pt[1], maxG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:280:5: warning: 'maxSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  280 |     Vnm_print(1, "Max scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  281 |             maxSpt[0], maxSpt[1], maxSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:280:5: warning: 'maxSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:290:5: warning: 'minG2' may be used uninitialized in this function [-Wmaybe-uninitialized]
  290 |     Vnm_print(1, "Min gradient-squared value               = %1.12E\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  291 |             minG2);
      |             ~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:286:5: warning: 'maxG2' may be used uninitialized in this function [-Wmaybe-uninitialized]
  286 |     Vnm_print(1, "Max gradient-squared value               = %1.12E\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  287 |             maxG2);
      |             ~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:278:5: warning: 'maxS' may be used uninitialized in this function [-Wmaybe-uninitialized]
  278 |     Vnm_print(1, "Max scalar value                         = %1.12E\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  279 |             maxS);
      |             ~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/analysis.c:182:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized]
  182 |         if (!readGrid(&mask, maskPath, format)) {
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 77%] Linking C executable ../bin/analysis
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 77%] Built target analysis
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 78%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c:28:12: warning: unused variable 'avg' [-Wunused-variable]
   28 |     double avg;
      |            ^~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c:19:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c:19:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c:19:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2mol.c:19:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 80%] Linking C executable ../bin/dx2mol
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 80%] Built target dx2mol
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 81%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:25:10: warning: unused variable 'avg' [-Wunused-variable]
   25 |   double avg;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:19: warning: unused variable 'k' [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |                   ^
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:16: warning: unused variable 'j' [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |                ^
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:13: warning: unused variable 'i' [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |             ^
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:10: warning: unused variable 'u' [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |          ^
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:17:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:17:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:17:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/dx2uhbd.c:17:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 82%] Linking C executable ../bin/dx2uhbd
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 82%] Built target dx2uhbd
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 83%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:45:64: warning: variable 'extent' set but not used [-Wunused-but-set-variable]
   45 |         float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3];
      |                                                                ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:45:50: warning: unused variable 'xdata' [-Wunused-variable]
   45 |         float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3];
      |                                                  ^~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:45:15: warning: unused variable 'val' [-Wunused-variable]
   45 |         float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3];
      |               ^~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:16:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:16:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:16:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:16:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:76:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   76 |         fread(&igrid, 1, sizeof(int), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:89:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   89 |         fread(buffer, 1, sizeof(char) * 10, pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:97:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   97 |         fread(data, tot_grid, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:103:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  103 |         fread(&scale, 1, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/del2dx.c:106:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  106 |         fread(oldmid, 3, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 84%] Linking C executable ../bin/del2dx
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 84%] Built target del2dx
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 85%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:42:19: warning: unused variable 'index' [-Wunused-variable]
   42 |         int i,j,k,index,icol;
      |                   ^~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:42:17: warning: unused variable 'k' [-Wunused-variable]
   42 |         int i,j,k,index,icol;
      |                 ^
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:42:15: warning: unused variable 'j' [-Wunused-variable]
   42 |         int i,j,k,index,icol;
      |               ^
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:14:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:14:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:97:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   97 |         fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:98:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   98 |         fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:137:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  137 |                 fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  138 |                 fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:139:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  139 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:140:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  140 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:155:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  155 |                 fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:156:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  156 |                 fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:157:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  157 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/tensor2dx.c:158:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  158 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Linking C executable ../bin/tensor2dx
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 87%] Built target tensor2dx
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 88%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:3:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_grid' [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:24:5: note: in expansion of macro 'MAT3'
   24 |     MAT3(grid, MXGRD, MXGRD, MXGRD);
      |     ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:3:
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:3:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:3:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:3:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   30 |     scanf("%s", flnm);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   42 |     scanf("%s", newfile);
      |     ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   54 |     fscanf(inFile, "%s", title);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   57 |     fscanf(inFile, "%lf", &scale);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |     fscanf(inFile, "%lf", &dum2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   63 |     fscanf(inFile, "%d", &grdflg);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |     fscanf(inFile, "%d", &idum2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   69 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   72 |     fscanf(inFile, "%d", &one);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   75 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   78 |     fscanf(inFile, "%d", &im);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   81 |     fscanf(inFile, "%d", &jm);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   84 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   87 |     fscanf(inFile, "%lf", &h);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   90 |     fscanf(inFile, "%lf", &ox);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   93 |     fscanf(inFile, "%lf", &oy);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   96 |     fscanf(inFile, "%lf", &oz);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   99 |     fscanf(inFile, "%lf", &dum3);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  102 |     fscanf(inFile, "%lf", &dum4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  105 |     fscanf(inFile, "%lf", &dum5);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  108 |     fscanf(inFile, "%lf", &dum6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  111 |     fscanf(inFile, "%lf", &dum7);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  114 |     fscanf(inFile, "%lf", &dum8);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  117 |     fscanf(inFile, "%d", &idum3);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  120 |     fscanf(inFile, "%d", &idum4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  125 |         fscanf(inFile, "%d", &kk);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  128 |         fscanf(inFile, "%d", &im);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  131 |         fscanf(inFile, "%d", &jm);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  138 |                 fscanf(inFile, "%lf", RAT3(grid, i, j, k));
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Linking C executable ../bin/uhbd_asc2bin
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 89%] Built target uhbd_asc2bin
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 90%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o
/builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c: In function 'main':
/builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c:20:12: warning: unused variable 'j' [-Wunused-variable]
   20 |     int i, j;
      |            ^
/builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c:18:34: warning: unused variable 'disp' [-Wunused-variable]
   18 |     double *pos, energy, zmagic, disp[3], force[3];
      |                                  ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c:8:
/builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/coulomb.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 91%] Linking C executable ../bin/coulomb
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 91%] Built target coulomb
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 92%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/born.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/born.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/born.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/tools/manip/born.c:8:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 94%] Linking C executable ../bin/born
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 94%] Built target born
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 95%] Swig compile apbslib.i for python
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 95%] Built target apbslib_swig_compilation
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 96%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getPotentials':
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3264:12: warning: unused variable 'rc' [-Wunused-variable]
 3264 |     int i, rc, nx, ny, nz;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getForces':
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3318:31: warning: unused variable 'npholder' [-Wunused-variable]
 3318 |     PyObject *npvalues, *np, *npholder;
      |                               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3318:26: warning: unused variable 'np' [-Wunused-variable]
 3318 |     PyObject *npvalues, *np, *npholder;
      |                          ^~
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3318:15: warning: unused variable 'npvalues' [-Wunused-variable]
 3318 |     PyObject *npvalues, *np, *npholder;
      |               ^~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727:
/builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 97%] Linking C shared library ../../lib/_apbslib.so
/builddir/build/BUILD/apbs-3.0.0/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4590 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 3 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.c:267:26: note: in a call to function 'Vparam_getAtomData'
  267 | VPUBLIC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                          ^
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4591 |         if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O");
      |                                           ^
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 2 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 3 of type 'char *'
/builddir/build/BUILD/apbs-3.0.0/src/generic/vparam.c:267:26: note: in a call to function 'Vparam_getAtomData'
  267 | VPUBLIC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 97%] Built target _apbslib
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 98%] Building C object contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:57:21: warning: argument 23 of type 'double[1]' with mismatched bound [-Warray-parameter=]
   57 |              double esenergy[1],
      |              ~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:19:
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.h:173:30: note: previously declared as 'double[20]'
  173 |                       double esEnergy[NOSH_MAXCALC],
      |                       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:58:21: warning: argument 24 of type 'double[1]' with mismatched bound [-Warray-parameter=]
   58 |              double npenergy[1],
      |              ~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:19:
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.h:174:30: note: previously declared as 'double[20]'
  174 |                       double npEnergy[NOSH_MAXCALC],
      |                       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_':
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:278:5: warning: multi-line comment [-Wcomment]
  278 |     //  Vnm_print(1,"\nError you must provide a parameter file if you\n" \
      |     ^
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:110:21: warning: unused variable 'isolve' [-Wunused-variable]
  110 |     int rank, size, isolve, debug, natom;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:98:11: warning: unused variable 'gm' [-Wunused-variable]
   98 |     void *gm[NOSH_MAXMOL];
      |           ^~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:97:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable]
   97 |     void *fetk[NOSH_MAXCALC];
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:85:14: warning: unused variable 'feparm' [-Wunused-variable]
   85 |     FEMparm *feparm = VNULL;
      |              ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function 'setupString':
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:938:64: warning: implicit declaration of function 'getpid' [-Wimplicit-function-declaration]
  938 |       sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid());
      |                                                                ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:11:
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: At top level:
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:78,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:11:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/generic/nosh.h:79,
                 from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:11:
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:11:
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function 'getElecEnergy':
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:1055:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1055 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_':
/builddir/build/BUILD/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:549:56: warning: 'outputformat' may be used uninitialized [-Wmaybe-uninitialized]
  549 |                 if ((pbeparm->calcenergy == PCE_COMPS) && (outputformat != OUTPUT_NULL)){
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking C static library ../../../lib/libiapbs.a
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[100%] Built target iapbs
make[1]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
make: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BJNIZa
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64
++ dirname /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64
+ cd apbs-3.0.0
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64 'INSTALL=/usr/bin/install -p' -C build
make: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[1]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[  5%] Built target apbs_mg
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 27%] Built target apbs_generic
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 48%] Built target apbs_pmgc
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 49%] Built target apbs
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 50%] Built target apbs_routines
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 54%] Built target apbs-bin
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 56%] Built target mgmesh
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 58%] Built target smooth
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 61%] Built target dxmath
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 63%] Built target mergedx
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 65%] Built target mergedx2
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 68%] Built target value
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 70%] Built target multivalue
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 72%] Built target benchmark
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 75%] Built target similarity
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 77%] Built target analysis
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 80%] Built target dx2mol
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 82%] Built target dx2uhbd
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 84%] Built target del2dx
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 87%] Built target tensor2dx
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 89%] Built target uhbd_asc2bin
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 91%] Built target coulomb
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 94%] Built target born
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 95%] Built target apbslib_swig_compilation
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[ 97%] Built target _apbslib
make[2]: Entering directory '/builddir/build/BUILD/apbs-3.0.0/build'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
[100%] Built target iapbs
make[1]: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
Install the project...
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/born
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/coulomb
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/uhbd_asc2bin
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/tensor2dx
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/del2dx
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/dx2uhbd
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/dx2mol
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/analysis
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/similarity
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/benchmark
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/multivalue
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/value
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/mergedx2
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/mergedx
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/dxmath
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/smooth
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs/tools/bin/mgmesh
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/libapbs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/libapbs.so.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/libapbs.so
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/apbscfg.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/apbs.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/routines.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/nosh.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/mgparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/femparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/pbamparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/pbsamparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/pbeparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/bemparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/geoflowparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/apolparm.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vacc.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/valist.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vatom.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vpbe.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vcap.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vclist.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vstring.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vparam.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vgreen.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vmatrix.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vhal.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/generic/vunit.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/buildAd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/buildBd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/buildGd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/buildPd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/cgd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/gsd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/matvecd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mgcsd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mgdrvd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mgsubd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mikpckd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mlinpckd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mypdec.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/newtond.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/newdrvd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/powerd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/smoothd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/pmgc/mgfasd.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/mg/vgrid.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/mg/vmgrid.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/mg/vopot.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/mg/vpmg.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/apbs/mg/vpmgp.h
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mgmesh
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mgmesh" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/smooth
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/smooth" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dxmath
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dxmath" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx2
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx2" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/value
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/value" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/multivalue
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/multivalue" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/benchmark
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/benchmark" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/similarity
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/similarity" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/analysis
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/analysis" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2mol
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2mol" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2uhbd
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2uhbd" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/del2dx
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/del2dx" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/tensor2dx
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/tensor2dx" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/uhbd_asc2bin
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/uhbd_asc2bin" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/coulomb
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/coulomb" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/born
-- Set runtime path of "/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/born" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib/libiapbs.a
-- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/include/iapbs/apbs_driver.h
make: Leaving directory '/builddir/build/BUILD/apbs-3.0.0/build'
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/coulomb
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/coulomb /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-coulomb
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/coulomb
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/born
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/born /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-born
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/born
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mgmesh
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mgmesh /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mgmesh
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mgmesh
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dxmath
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dxmath /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dxmath
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dxmath
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx2
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx2 /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mergedx2
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx2
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mergedx
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/mergedx
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/value
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/value /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-value
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/value
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/uhbd_asc2bin
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/uhbd_asc2bin /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-uhbd_asc2bin
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/uhbd_asc2bin
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/smooth
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/smooth /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-smooth
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/smooth
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2mol
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2mol /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dx2mol
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2mol
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2uhbd
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2uhbd /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dx2uhbd
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/dx2uhbd
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/similarity
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/similarity /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-similarity
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/similarity
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/multivalue
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/multivalue /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-multivalue
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/multivalue
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/benchmark
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/benchmark /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-benchmark
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/benchmark
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/analysis
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/analysis /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-analysis
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/analysis
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/del2dx
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/del2dx /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-del2dx
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/del2dx
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/tensor2dx
+ cp -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/tensor2dx /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-tensor2dx
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/tensor2dx
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-coulomb
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-born
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mgmesh
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dxmath
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mergedx2
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mergedx
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-value
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-uhbd_asc2bin
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-smooth
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dx2mol
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dx2uhbd
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-similarity
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-multivalue
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-benchmark
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-analysis
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-del2dx
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ for bin in /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-tensor2dx
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
+ chrpath -d /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/libapbs.so.1
+ mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9/site-packages/apbs
+ install -pm 755 tools/manip/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/
+ pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/psize.py
/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/psize.py: updating
+ ln -s /usr/lib64/python3.9/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-psize.py
+ install -pm 755 build/lib/_apbslib.so /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/
+ rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/apbs
++ find /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64 -type f '(' -name '*.a' ')'
+ for i in `find /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64 -type f \( -name "*.a" \)`
+ rm -f /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib/libiapbs.a
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 3.0.0-17.el9 --unique-debug-suffix -3.0.0-17.el9.x86_64 --unique-debug-src-base apbs-3.0.0-17.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/apbs-3.0.0
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-benchmark
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-analysis
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-born
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-coulomb
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-del2dx
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dx2mol
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dx2uhbd
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-dxmath
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mergedx
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mgmesh
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-mergedx2
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-similarity
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-multivalue
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-tensor2dx
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-smooth
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-uhbd_asc2bin
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/bin/apbs-value
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/_apbslib.so
extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/libapbs.so.1
original debug info size: 4668kB, size after compression: 4204kB
/usr/bin/sepdebugcrcfix: Updated 20 CRC32s, 0 CRC32s did match.
5153 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib/debug/usr/lib64/python3.9 using python3.9
Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64/python3.9 using python3.9
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.wGlYpv
+ umask 022
+ cd /builddir/build/BUILD
~/build/BUILD/apbs-3.0.0/tests ~/build/BUILD/apbs-3.0.0
+ cd apbs-3.0.0
+ pushd tests
+ export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/lib64
+ /usr/bin/python3 ./apbs_tester.py
Testing all sections
The following sections will be tested: born, actin-dimer-auto, actin-dimer-parallel, alkanes, FKBP, hca-bind, ionize, ion-pmf, ion-protein, pka-lig, point-pmf, solv
================================================================================
Running tests for born section
--------------------------------------------------------------------------------
Testing forces from apbs-forces.in

Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.000705 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-auto.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.607073836227E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.200266567971E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to potential.dx.gz
  Total electrostatic energy = 4.732245131587E+03 kJ/mol
  Calculating forces...
  Writing potential to potential.dx.gz
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.190871482831E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.430874049735E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.962018684215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -2.297735526282E+02 kJ/mol
  Global net ELEC energy = -2.297735526282E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-auto.out
RESULT 960.7073836227
RESULT 2200.266567971
RESULT 4732.245131587
RESULT 1190.871482831
RESULT 2430.874049735
RESULT 4962.018684215
RESULT -229.7735526282
Testing computed result 9.607073836227E+02 against expected result 9.607074E+02
*** PASSED ***
Testing computed result 2.200266567971E+03 against expected result 2.200267E+03
*** PASSED ***
Testing computed result 4.732245131587E+03 against expected result 4.732245E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 2.430874049735E+03 against expected result 2.430874E+03
*** PASSED ***
Testing computed result 4.962018684215E+03 against expected result 4.962019E+03
*** PASSED ***
Testing computed result -2.297735526282E+02 against expected result -2.297735E+02
*** PASSED ***
Elapsed time: 0.576462 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-auto.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.532928767450E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.201243880085E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.733006258977E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.190871482831E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.430874049735E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.962018684215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -2.290124252387E+02 kJ/mol
  Global net ELEC energy = -2.290124252387E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-auto.out
RESULT 953.292876745
RESULT 2201.243880085
RESULT 4733.006258977
RESULT 1190.871482831
RESULT 2430.874049735
RESULT 4962.018684215
RESULT -229.0124252387
Testing computed result 9.532928767450E+02 against expected result 9.532929E+02
*** PASSED ***
Testing computed result 2.201243880085E+03 against expected result 2.201244E+03
*** PASSED ***
Testing computed result 4.733006258977E+03 against expected result 4.733006E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 2.430874049735E+03 against expected result 2.430874E+03
*** PASSED ***
Testing computed result 4.962018684215E+03 against expected result 4.962019E+03
*** PASSED ***
Testing computed result -2.290124252387E+02 against expected result -2.290124E+02
*** PASSED ***
Elapsed time: 0.541295 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-parallel.in

Splitting the input file into 4 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE0.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459022E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142935592471E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485255308186E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.761864094552E+01 kJ/mol
  Global net ELEC energy = -5.761864094552E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE0.out
Processor 0 results:
  2.401768459022E+02
  8.142935592471E+02
  1.485255308186E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.761864094552E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE1.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459022E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142778312125E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485246667424E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.762728170718E+01 kJ/mol
  Global net ELEC energy = -5.762728170718E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE1.out
Processor 1 results:
  2.401768459022E+02
  8.142778312125E+02
  1.485246667424E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.762728170718E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE2.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459091E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142935605696E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485255306569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.761864257239E+01 kJ/mol
  Global net ELEC energy = -5.761864257239E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE2.out
Processor 2 results:
  2.401768459091E+02
  8.142935605696E+02
  1.485255306569E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.761864257239E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE3.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459091E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142778325440E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485246665692E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.762728344954E+01 kJ/mol
  Global net ELEC energy = -5.762728344954E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE3.out
Processor 3 results:
  2.401768459091E+02
  8.142778325440E+02
  1.485246665692E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.762728344954E+01

RESULT 960.7073836226
RESULT 3257.1427835731997
RESULT 5941.0039478710005
RESULT 1190.8714828309999
RESULT 3519.7218230368003
RESULT 6171.495796544
RESULT -230.49184867463003
Testing computed result 9.607073836226E+02 against expected result 9.607074E+02
*** PASSED ***
Testing computed result 3.257142783573E+03 against expected result 3.257143E+03
*** PASSED ***
Testing computed result 5.941003947871E+03 against expected result 5.941004E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 3.519721823037E+03 against expected result 3.519722E+03
*** PASSED ***
Testing computed result 6.171495796544E+03 against expected result 6.171496E+03
*** PASSED ***
Testing computed result -2.304918486746E+02 against expected result -2.304918E+02
*** PASSED ***
Elapsed time: 2.490649 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-parallel.in

Splitting the input file into 4 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE0.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191816E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145369591602E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485524998001E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734895113069E+01 kJ/mol
  Global net ELEC energy = -5.734895113069E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE0.out
Processor 0 results:
  2.383232191816E+02
  8.145369591602E+02
  1.485524998001E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.734895113069E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE1.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191816E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145419898332E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485529328612E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734462051928E+01 kJ/mol
  Global net ELEC energy = -5.734462051928E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE1.out
Processor 1 results:
  2.383232191816E+02
  8.145419898332E+02
  1.485529328612E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.734462051928E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE2.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191909E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145369593489E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485524997676E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734895146550E+01 kJ/mol
  Global net ELEC energy = -5.734895146550E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE2.out
Processor 2 results:
  2.383232191909E+02
  8.145369593489E+02
  1.485524997676E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.734895146550E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE3.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191909E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145419900310E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485529328301E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734462084052E+01 kJ/mol
  Global net ELEC energy = -5.734462084052E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE3.out
Processor 3 results:
  2.383232191909E+02
  8.145419900310E+02
  1.485529328301E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.734462084052E+01

RESULT 953.292876745
RESULT 3258.1578983732998
RESULT 5942.108652589999
RESULT 1190.8714828309999
RESULT 3519.7218230368003
RESULT 6171.495796544
RESULT -229.38714395599
Testing computed result 9.532928767450E+02 against expected result 9.532929E+02
*** PASSED ***
Testing computed result 3.258157898373E+03 against expected result 3.258158E+03
*** PASSED ***
Testing computed result 5.942108652590E+03 against expected result 5.942109E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 3.519721823037E+03 against expected result 3.519722E+03
*** PASSED ***
Testing computed result 6.171495796544E+03 against expected result 6.171496E+03
*** PASSED ***
Testing computed result -2.293871439560E+02 against expected result -2.293871E+02
*** PASSED ***
Elapsed time: 2.485379 seconds
--------------------------------------------------------------------------------
Total elapsed time: 6.094490 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for actin-dimer-auto section
--------------------------------------------------------------------------------
Testing input file apbs-mol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-auto.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 1028.322 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.527617850342E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.919510754196E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.527671844880E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.915468859278E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.056317807611E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2069.492 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.836028296532E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 2 (mol2) - 1 (mol1) end
  Local net energy (PE 0) = 1.048683058625E+02 kJ/mol
  Global net ELEC energy = 1.048683058625E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 2069.492 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-auto.out
RESULT 152761.7850342
RESULT 291951.0754196
RESULT 152767.184488
RESULT 291546.8859278
RESULT 305631.7807611
RESULT 583602.8296532
RESULT 104.8683058625
Testing computed result 1.527617850342E+05 against expected result 1.527618E+05
*** PASSED ***
Testing computed result 2.919510754196E+05 against expected result 2.919511E+05
*** PASSED ***
Testing computed result 1.527671844880E+05 against expected result 1.527672E+05
*** PASSED ***
Testing computed result 2.915468859278E+05 against expected result 2.915469E+05
*** PASSED ***
Testing computed result 3.056317807611E+05 against expected result 3.056318E+05
*** PASSED ***
Testing computed result 5.836028296532E+05 against expected result 5.836028E+05
*** PASSED ***
Testing computed result 1.048683058625E+02 against expected result 1.048683E+02
*** PASSED ***
Elapsed time: 40.242708 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-auto.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 1028.322 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.528632421825E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.920618662320E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.529297900572E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.916592202835E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.059244262535E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2069.492 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.838306706232E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 2 (mol2) - 1 (mol1) end
  Local net energy (PE 0) = 1.095841077691E+02 kJ/mol
  Global net ELEC energy = 1.095841077691E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 2069.492 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-auto.out
RESULT 152863.2421825
RESULT 292061.866232
RESULT 152929.7900572
RESULT 291659.2202835
RESULT 305924.4262535
RESULT 583830.6706232
RESULT 109.5841077691
Testing computed result 1.528632421825E+05 against expected result 1.528632E+05
*** PASSED ***
Testing computed result 2.920618662320E+05 against expected result 2.920619E+05
*** PASSED ***
Testing computed result 1.529297900572E+05 against expected result 1.529298E+05
*** PASSED ***
Testing computed result 2.916592202835E+05 against expected result 2.916592E+05
*** PASSED ***
Testing computed result 3.059244262535E+05 against expected result 3.059244E+05
*** PASSED ***
Testing computed result 5.838306706232E+05 against expected result 5.838307E+05
*** PASSED ***
Testing computed result 1.095841077691E+02 against expected result 1.095841E+02
*** PASSED ***
Elapsed time: 31.025283 seconds
--------------------------------------------------------------------------------
Total elapsed time: 71.267991 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for actin-dimer-parallel section
--------------------------------------------------------------------------------
Testing input file apbs-mol-parallel.in

Splitting the input file into 8 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE0.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.335181353180E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.307364282738E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.892640552270E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.287357981689E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.237489755360E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.595556713401E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE0.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 8.344489735005E+00 kJ/mol
  Global net ELEC energy = 8.344489735005E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE0.out
Processor 0 results:
  1.335181353180E+03
  1.307364282738E+04
  2.892640552270E+03
  2.287357981689E+04
  4.237489755360E+03
  3.595556713401E+04
  8.344489735005E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE1.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.161150884899E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.271349239954E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.084559511557E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -9.159185455930E-02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.161009682231E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.271249973273E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE1.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -9.010749548674E-01 kJ/mol
  Global net ELEC energy = -9.010749548674E-01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE1.out
Processor 1 results:
  1.161150884899E+04
  9.271349239954E+04
  1.084559511557E-01
  9.159185455930E-02
  1.161009682231E+04
  9.271249973273E+04
  -9.010749548674E-01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.533327920982E+01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.349327483109E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.753646268927E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.716901575464E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.760706267384E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.753396861378E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE2.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.002011083293E+01 kJ/mol
  Global net ELEC energy = 3.002011083293E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE2.out
Processor 2 results:
  1.533327920982E+01
  3.349327483109E+02
  4.753646268927E+03
  3.716901575464E+04
  4.760706267384E+03
  3.753396861378E+04
  3.002011083293E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE3.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.803290534287E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.400275505449E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -8.150603559111E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -8.573366340513E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.804039178218E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.400354034488E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE3.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 8.710240552123E+00 kJ/mol
  Global net ELEC energy = 8.710240552123E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE3.out
Processor 3 results:
  1.803290534287E+04
  1.400275505449E+05
  8.150603559111E-01
  8.573366340513E-01
  1.804039178218E+04
  1.400354034488E+05
  8.710240552123E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE4.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.015087619451E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.216054441666E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.620207421716E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.273875050379E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.666622027749E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.306246439444E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE4.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 2.108446480104E+01 kJ/mol
  Global net ELEC energy = 2.108446480104E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE4.out
Processor 4 results:
  4.015087619451E+02
  3.216054441666E+03
  1.620207421716E+04
  1.273875050379E+05
  1.666622027749E+04
  1.306246439444E+05
  2.108446480104E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE5.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE5.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.100112513614E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.662571883858E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.370921758038E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.013366922344E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.115105077953E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.662768924081E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE5.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 2.371738924671E+00 kJ/mol
  Global net ELEC energy = 2.371738924671E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE5.out
Processor 5 results:
  2.100112513614E+03
  1.662571883858E+04
  4.370921758038E-01
  4.013366922344E-01
  2.115105077953E+03
  1.662768924081E+04
  2.371738924671E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE6.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE6.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -2.817378781616E+00 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.959534462269E+00 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.176793266728E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.643533578081E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.176229449467E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.643148330287E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE6.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -1.892943480882E+00 kJ/mol
  Global net ELEC energy = -1.892943480882E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE6.out
Processor 6 results:
  2.817378781616E+00
  1.959534462269E+00
  1.176793266728E+04
  9.643533578081E+04
  1.176229449467E+04
  9.643148330287E+04
  -1.892943480882E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE7.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-parallel-PE7.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.428230292158E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.199832997920E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.881300088062E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.152799174875E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.847712854852E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 2.618156668929E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE7.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.043753521012E+01 kJ/mol
  Global net ELEC energy = 3.043753521012E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE7.out
Processor 7 results:
  2.428230292158E+03
  2.199832997920E+04
  3.881300088062E+02
  4.152799174875E+03
  2.847712854852E+03
  2.618156668929E+04
  3.043753521012E+01

RESULT 35927.59777074854
RESULT 287991.6813140391
RESULT 36005.78432292607
RESULT 288019.58583029587
RESULT 72040.017332199
RESULT 576102.8221066899
RESULT 98.17456162013961
Testing computed result 3.592759777075E+04 against expected result 3.592760E+04
*** PASSED ***
Testing computed result 2.879916813140E+05 against expected result 2.879917E+05
*** PASSED ***
Testing computed result 3.600578432293E+04 against expected result 3.600578E+04
*** PASSED ***
Testing computed result 2.880195858303E+05 against expected result 2.880196E+05
*** PASSED ***
Testing computed result 7.204001733220E+04 against expected result 7.204002E+04
*** PASSED ***
Testing computed result 5.761028221067E+05 against expected result 5.761028E+05
*** PASSED ***
Testing computed result 9.817456162014E+01 against expected result 9.817456E+01
*** PASSED ***
Elapsed time: 109.534052 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-parallel.in

Splitting the input file into 8 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE0.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.371266245949E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.306912276054E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977036667733E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.288057348250E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.356039288708E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.595842845220E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE0.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 8.732209150865E+00 kJ/mol
  Global net ELEC energy = 8.732209150865E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE0.out
Processor 0 results:
  1.371266245949E+03
  1.306912276054E+04
  2.977036667733E+03
  2.288057348250E+04
  4.356039288708E+03
  3.595842845220E+04
  8.732209150865E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE1.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.183935033618E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.276168507128E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.420924995464E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.129046670919E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.183791435221E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.276041697078E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE1.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -1.155195837104E+00 kJ/mol
  Global net ELEC energy = -1.155195837104E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE1.out
Processor 1 results:
  1.183935033618E+04
  9.276168507128E+04
  1.420924995464E-01
  1.129046670919E-01
  1.183791435221E+04
  9.276041697078E+04
  -1.155195837104E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -9.992726432058E+00 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.375960934473E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.863608503641E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.720602537782E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.896854387650E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.757590620855E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE2.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.228473728523E+01 kJ/mol
  Global net ELEC energy = 3.228473728523E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE2.out
Processor 2 results:
  9.992726432058E+00
  3.375960934473E+02
  4.863608503641E+03
  3.720602537782E+04
  4.896854387650E+03
  3.757590620855E+04
  3.228473728523E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE3.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.826846317904E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.401007397614E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -9.966525690477E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -8.961424692860E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.827933209233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.401092487740E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE3.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 9.405155088028E+00 kJ/mol
  Global net ELEC energy = 9.405155088028E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE3.out
Processor 3 results:
  1.826846317904E+04
  1.401007397614E+05
  9.966525690477E-01
  8.961424692860E-01
  1.827933209233E+04
  1.401092487740E+05
  9.405155088028E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE4.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.021998204986E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.215581388579E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.644646339930E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.274227930024E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.689865332202E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.306747503910E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE4.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.637600005488E+01 kJ/mol
  Global net ELEC energy = 3.637600005488E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE4.out
Processor 4 results:
  4.021998204986E+02
  3.215581388579E+03
  1.644646339930E+04
  1.274227930024E+05
  1.689865332202E+04
  1.306747503910E+05
  3.637600005488E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE5.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE5.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.187673595319E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.663590032901E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.710032885061E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.849499127484E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.189033693728E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.663641996916E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE5.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 1.004590063261E+00 kJ/mol
  Global net ELEC energy = 1.004590063261E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE5.out
Processor 5 results:
  2.187673595319E+03
  1.663590032901E+04
  4.710032885061E-01
  4.849499127484E-01
  2.189033693728E+03
  1.663641996916E+04
  1.004590063261E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE6.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE6.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.897659240526E+00 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -2.552765434658E+00 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.200266111088E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.646358551314E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.199560371894E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.645933328248E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE6.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -1.699465221478E+00 kJ/mol
  Global net ELEC energy = -1.699465221478E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE6.out
Processor 6 results:
  4.897659240526E+00
  2.552765434658E+00
  1.200266111088E+04
  9.646358551314E+04
  1.199560371894E+04
  9.645933328248E+04
  -1.699465221478E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE7.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-parallel-PE7.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.521894873214E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.200161660501E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.033680106430E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.154432431334E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.960165191413E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 2.618664307349E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE7.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.059403714563E+01 kJ/mol
  Global net ELEC energy = 3.059403714563E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE7.out
Processor 7 results:
  2.521894873214E+03
  2.200161660501E+04
  4.033680106430E+02
  4.154432431334E+03
  2.960165191413E+03
  2.618664307349E+04
  3.059403714563E+01

RESULT 36605.73843587318
RESULT 288124.794774701
RESULT 36694.74744055409
RESULT 288128.90380424313
RESULT 73413.59604699901
RESULT 576361.14712166
RESULT 115.54206772931201
Testing computed result 3.660573843587E+04 against expected result 3.660574E+04
*** PASSED ***
Testing computed result 2.881247947747E+05 against expected result 2.881248E+05
*** PASSED ***
Testing computed result 3.669474744055E+04 against expected result 3.669475E+04
*** PASSED ***
Testing computed result 2.881289038042E+05 against expected result 2.881289E+05
*** PASSED ***
Testing computed result 7.341359604700E+04 against expected result 7.341360E+04
*** PASSED ***
Testing computed result 5.763611471217E+05 against expected result 5.763611E+05
*** PASSED ***
Testing computed result 1.155420677293E+02 against expected result 1.155421E+02
*** PASSED ***
Elapsed time: 94.170694 seconds
--------------------------------------------------------------------------------
Total elapsed time: 203.704746 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for alkanes section
--------------------------------------------------------------------------------
Testing input file alkanes.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  alkanes.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file alkanes.in...
rank 0 size 1...
Parsed input file.
Reading parameter data from parm.dat.
Got paths for 11 molecules
Reading PDB-format atom data from 2-methylbutane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 4.33e+00 e
Reading PDB-format atom data from butane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (3.917e+00, 7.025e-01, -8.575e+00)
  Net charge 3.51e+00 e
Reading PDB-format atom data from cyclohexane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (1.123e+00, 5.880e-01, 7.680e-01)
  Net charge 4.93e+00 e
Reading PDB-format atom data from cyclopentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  13 atoms
  Centered at (1.320e+00, 5.255e-01, 1.289e+00)
  Net charge 3.88e+00 e
Reading PDB-format atom data from ethane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (2.210e-01, -2.100e-02, 7.650e-01)
  Net charge 1.87e+00 e
Reading PDB-format atom data from hexane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  20 atoms
  Centered at (4.951e+00, -9.500e-03, -8.406e+00)
  Net charge 5.16e+00 e
Reading PDB-format atom data from isobutane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.859e+01, 1.864e+01, 1.921e+01)
  Net charge 3.51e+00 e
Reading PDB-format atom data from methane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5 atoms
  Centered at (1.803e+01, 1.779e+01, 1.782e+01)
  Net charge 1.05e+00 e
Reading PDB-format atom data from neopentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (1.867e+01, 1.894e+01, 1.920e+01)
  Net charge 4.33e+00 e
Reading PDB-format atom data from pentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (4.460e+00, 1.615e-01, -8.566e+00)
  Net charge 4.33e+00 e
Reading PDB-format atom data from propane.pdb.
  11 atoms
  Centered at (1.836e+01, 1.896e+01, 1.861e+01)
  Net charge 2.69e+00 e
Preparing to run 11 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated-2-methylbutane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.815624614267E+00
  SASA for atom 1: 0.000000000000E+00
  SASA for atom 2: 6.122920124655E-01
  SASA for atom 3: 3.957497153740E+00
  SASA for atom 4: 4.308445014544E+00
  SASA for atom 5: 1.843264951960E+01
  SASA for atom 6: 1.837011296483E+01
  SASA for atom 7: 1.666599184724E+01
  SASA for atom 8: 1.480031796315E+01
  SASA for atom 9: 1.603020354037E+01
  SASA for atom 10: 1.473778140838E+01
  SASA for atom 11: 1.611879699297E+01
  SASA for atom 12: 1.810954398660E+01
  SASA for atom 13: 1.420100931324E+01
  SASA for atom 14: 1.437298483886E+01
  SASA for atom 15: 1.814081226399E+01
  SASA for atom 16: 2.152820898091E+01

Total solvent accessible surface area: 214.202 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.243280922127E-02
  Surface tension*area energy for atom 1: 0.000000000000E+00
  Surface tension*area energy for atom 2: 5.204482105957E-03
  Surface tension*area energy for atom 3: 3.363872580679E-02
  Surface tension*area energy for atom 4: 3.662178262362E-02
  Surface tension*area energy for atom 5: 1.566775209166E-01
  Surface tension*area energy for atom 6: 1.561459602010E-01
  Surface tension*area energy for atom 7: 1.416609307015E-01
  Surface tension*area energy for atom 8: 1.258027026868E-01
  Surface tension*area energy for atom 9: 1.362567300932E-01
  Surface tension*area energy for atom 10: 1.252711419712E-01
  Surface tension*area energy for atom 11: 1.370097744402E-01
  Surface tension*area energy for atom 12: 1.539311238861E-01
  Surface tension*area energy for atom 13: 1.207085791625E-01
  Surface tension*area energy for atom 14: 1.221703711303E-01
  Surface tension*area energy for atom 15: 1.541969042439E-01
  Surface tension*area energy for atom 16: 1.829897763377E-01

Total surface tension energy: 1.82072 kJ/mol

Total solvent accessible volume: 253.665 A^3

Total pressure*volume energy: 60.7274 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.271287875274E+00
  WCA energy for atom 1: -5.600872869478E+00
  WCA energy for atom 2: -5.773775123943E+00
  WCA energy for atom 3: -6.072801488986E+00
  WCA energy for atom 4: -6.378470721845E+00
  WCA energy for atom 5: -1.573474558351E+00
  WCA energy for atom 6: -1.582338715648E+00
  WCA energy for atom 7: -1.504044838266E+00
  WCA energy for atom 8: -1.351002262819E+00
  WCA energy for atom 9: -1.437367175239E+00
  WCA energy for atom 10: -1.384626257493E+00
  WCA energy for atom 11: -1.468867560891E+00
  WCA energy for atom 12: -1.557005662832E+00
  WCA energy for atom 13: -1.473759654043E+00
  WCA energy for atom 14: -1.502261431335E+00
  WCA energy for atom 15: -1.550940901474E+00
  WCA energy for atom 16: -1.667828659696E+00

Total WCA energy: -48.1507 kJ/mol

Total non-polar energy = 1.439739455792E+01 kJ/mol
----------------------------------------
CALCULATION #2 (solvated-butane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 8.064333822716E-01
  SASA for atom 3: 4.375647796400E+00
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.660345529247E+01
  SASA for atom 8: 1.658782115377E+01
  SASA for atom 9: 1.658260977421E+01
  SASA for atom 10: 1.658260977421E+01
  SASA for atom 11: 2.145003828744E+01
  SASA for atom 12: 1.852124297220E+01
  SASA for atom 13: 1.856293400871E+01

Total solvent accessible surface area: 193.855 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 6.854683749309E-03
  Surface tension*area energy for atom 3: 3.719300626940E-02
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.411293699860E-01
  Surface tension*area energy for atom 8: 1.409964798071E-01
  Surface tension*area energy for atom 9: 1.409521830808E-01
  Surface tension*area energy for atom 10: 1.409521830808E-01
  Surface tension*area energy for atom 11: 1.823253254433E-01
  Surface tension*area energy for atom 12: 1.574305652637E-01
  Surface tension*area energy for atom 13: 1.577849390741E-01

Total surface tension energy: 1.64777 kJ/mol

Total solvent accessible volume: 217.863 A^3

Total pressure*volume energy: 52.1564 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.728858147814E+00
  WCA energy for atom 1: -6.204037472587E+00
  WCA energy for atom 2: -6.202937735018E+00
  WCA energy for atom 3: -6.728762249931E+00
  WCA energy for atom 4: -1.623549989062E+00
  WCA energy for atom 5: -1.709092300778E+00
  WCA energy for atom 6: -1.625196457114E+00
  WCA energy for atom 7: -1.484289341167E+00
  WCA energy for atom 8: -1.485410538626E+00
  WCA energy for atom 9: -1.485593139015E+00
  WCA energy for atom 10: -1.484878734279E+00
  WCA energy for atom 11: -1.708585062695E+00
  WCA energy for atom 12: -1.625094916482E+00
  WCA energy for atom 13: -1.624416805392E+00

Total WCA energy: -41.7207 kJ/mol

Total non-polar energy = 1.208346456826E+01 kJ/mol
----------------------------------------
CALCULATION #3 (solvated-cyclohexane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 7.840324549863E-01
  SASA for atom 1: 8.064333822716E-01
  SASA for atom 2: 8.288343095569E-01
  SASA for atom 3: 7.840324549863E-01
  SASA for atom 4: 7.989664065098E-01
  SASA for atom 5: 8.363012853187E-01
  SASA for atom 6: 2.001169752764E+01
  SASA for atom 7: 1.616048802948E+01
  SASA for atom 8: 2.001169752764E+01
  SASA for atom 9: 1.619175630687E+01
  SASA for atom 10: 1.616048802948E+01
  SASA for atom 11: 1.993352683418E+01
  SASA for atom 12: 2.001169752764E+01
  SASA for atom 13: 1.618133354774E+01
  SASA for atom 14: 1.617091078861E+01
  SASA for atom 15: 2.001690890721E+01
  SASA for atom 16: 1.993873821374E+01
  SASA for atom 17: 1.617091078861E+01

Total solvent accessible surface area: 221.799 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 6.664275867383E-03
  Surface tension*area energy for atom 1: 6.854683749309E-03
  Surface tension*area energy for atom 2: 7.045091631234E-03
  Surface tension*area energy for atom 3: 6.664275867383E-03
  Surface tension*area energy for atom 4: 6.791214455333E-03
  Surface tension*area energy for atom 5: 7.108560925209E-03
  Surface tension*area energy for atom 6: 1.700994289850E-01
  Surface tension*area energy for atom 7: 1.373641482506E-01
  Surface tension*area energy for atom 8: 1.700994289850E-01
  Surface tension*area energy for atom 9: 1.376299286084E-01
  Surface tension*area energy for atom 10: 1.373641482506E-01
  Surface tension*area energy for atom 11: 1.694349780905E-01
  Surface tension*area energy for atom 12: 1.700994289850E-01
  Surface tension*area energy for atom 13: 1.375413351558E-01
  Surface tension*area energy for atom 14: 1.374527417032E-01
  Surface tension*area energy for atom 15: 1.701437257113E-01
  Surface tension*area energy for atom 16: 1.694792748168E-01
  Surface tension*area energy for atom 17: 1.374527417032E-01

Total surface tension energy: 1.88529 kJ/mol

Total solvent accessible volume: 267.435 A^3

Total pressure*volume energy: 64.0239 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -5.793234697241E+00
  WCA energy for atom 1: -5.784370526583E+00
  WCA energy for atom 2: -5.791799130412E+00
  WCA energy for atom 3: -5.788504399087E+00
  WCA energy for atom 4: -5.797319672490E+00
  WCA energy for atom 5: -5.787358035342E+00
  WCA energy for atom 6: -1.523887929614E+00
  WCA energy for atom 7: -1.413678912317E+00
  WCA energy for atom 8: -1.521751604392E+00
  WCA energy for atom 9: -1.414741802525E+00
  WCA energy for atom 10: -1.413367854344E+00
  WCA energy for atom 11: -1.523407238081E+00
  WCA energy for atom 12: -1.523000623583E+00
  WCA energy for atom 13: -1.413922068538E+00
  WCA energy for atom 14: -1.416316744211E+00
  WCA energy for atom 15: -1.524577474659E+00
  WCA energy for atom 16: -1.523300410052E+00
  WCA energy for atom 17: -1.414522566061E+00

Total WCA energy: -52.3691 kJ/mol

Total non-polar energy = 1.354016672221E+01 kJ/mol
----------------------------------------
CALCULATION #4 (solvated-cyclopentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 9.490526193215E+00
  SASA for atom 1: 9.512927120500E+00
  SASA for atom 2: 2.299828534626E+00
  SASA for atom 3: 1.919012770776E+00
  SASA for atom 4: 2.307295510388E+00
  SASA for atom 5: 2.325838699632E+01
  SASA for atom 6: 2.325838699632E+01
  SASA for atom 7: 2.045987617019E+01
  SASA for atom 8: 2.067875411190E+01
  SASA for atom 9: 2.028790064456E+01
  SASA for atom 10: 1.897463299431E+01
  SASA for atom 11: 2.048593306801E+01
  SASA for atom 12: 2.070481100972E+01

Total solvent accessible surface area: 193.638 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 8.066947264233E-02
  Surface tension*area energy for atom 1: 8.085988052425E-02
  Surface tension*area energy for atom 2: 1.954854254432E-02
  Surface tension*area energy for atom 3: 1.631160855160E-02
  Surface tension*area energy for atom 4: 1.961201183830E-02
  Surface tension*area energy for atom 5: 1.976962894687E-01
  Surface tension*area energy for atom 6: 1.976962894687E-01
  Surface tension*area energy for atom 7: 1.739089474466E-01
  Surface tension*area energy for atom 8: 1.757694099511E-01
  Surface tension*area energy for atom 9: 1.724471554788E-01
  Surface tension*area energy for atom 10: 1.612843804516E-01
  Surface tension*area energy for atom 11: 1.741304310781E-01
  Surface tension*area energy for atom 12: 1.759908935826E-01

Total surface tension energy: 1.64593 kJ/mol

Total solvent accessible volume: 217.998 A^3

Total pressure*volume energy: 52.1887 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.343496616804E+00
  WCA energy for atom 1: -6.327869601807E+00
  WCA energy for atom 2: -6.334858040579E+00
  WCA energy for atom 3: -6.296075406417E+00
  WCA energy for atom 4: -6.345600816761E+00
  WCA energy for atom 5: -1.663697465126E+00
  WCA energy for atom 6: -1.662444032853E+00
  WCA energy for atom 7: -1.572325104493E+00
  WCA energy for atom 8: -1.604626551065E+00
  WCA energy for atom 9: -1.586431484963E+00
  WCA energy for atom 10: -1.554291291374E+00
  WCA energy for atom 11: -1.574315220751E+00
  WCA energy for atom 12: -1.604941679892E+00

Total WCA energy: -44.471 kJ/mol

Total non-polar energy = 9.363673200142E+00 kJ/mol
----------------------------------------
CALCULATION #5 (solvated-ethane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 5.995981536705E+00
  SASA for atom 1: 5.966113633657E+00
  SASA for atom 2: 2.121552620704E+01
  SASA for atom 3: 2.124158310486E+01
  SASA for atom 4: 2.125200586399E+01
  SASA for atom 5: 2.123116034573E+01
  SASA for atom 6: 2.125200586399E+01
  SASA for atom 7: 2.127285138225E+01

Total solvent accessible surface area: 139.427 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 5.096584306199E-02
  Surface tension*area energy for atom 1: 5.071196588609E-02
  Surface tension*area energy for atom 2: 1.803319727598E-01
  Surface tension*area energy for atom 3: 1.805534563913E-01
  Surface tension*area energy for atom 4: 1.806420498439E-01
  Surface tension*area energy for atom 5: 1.804648629387E-01
  Surface tension*area energy for atom 6: 1.806420498439E-01
  Surface tension*area energy for atom 7: 1.808192367491E-01

Total surface tension energy: 1.18513 kJ/mol

Total solvent accessible volume: 140.346 A^3

Total pressure*volume energy: 33.5988 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -7.360066353115E+00
  WCA energy for atom 1: -7.355483516201E+00
  WCA energy for atom 2: -1.776106201066E+00
  WCA energy for atom 3: -1.773973940651E+00
  WCA energy for atom 4: -1.775401936843E+00
  WCA energy for atom 5: -1.773464835521E+00
  WCA energy for atom 6: -1.774382856097E+00
  WCA energy for atom 7: -1.772366599434E+00

Total WCA energy: -25.3612 kJ/mol

Total non-polar energy = 9.422717598546E+00 kJ/mol
----------------------------------------
CALCULATION #6 (solvated-hexane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 3.285469335181E-01
  SASA for atom 3: 2.986790304710E-01
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.655655287639E+01
  SASA for atom 8: 1.655134149682E+01
  SASA for atom 9: 1.360170066332E+01
  SASA for atom 10: 1.357043238593E+01
  SASA for atom 11: 1.381536722546E+01
  SASA for atom 12: 1.384142412329E+01
  SASA for atom 13: 7.765654792245E-01
  SASA for atom 14: 1.684839013200E+01
  SASA for atom 15: 1.682233323417E+01
  SASA for atom 16: 4.166572475070E+00
  SASA for atom 17: 2.179398933870E+01
  SASA for atom 18: 1.877660057086E+01
  SASA for atom 19: 1.876096643216E+01

Total solvent accessible surface area: 250.291 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 2.792648934903E-03
  Surface tension*area energy for atom 3: 2.538771759003E-03
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.407306994493E-01
  Surface tension*area energy for atom 8: 1.406864027230E-01
  Surface tension*area energy for atom 9: 1.156144556382E-01
  Surface tension*area energy for atom 10: 1.153486752804E-01
  Surface tension*area energy for atom 11: 1.174306214164E-01
  Surface tension*area energy for atom 12: 1.176521050479E-01
  Surface tension*area energy for atom 13: 6.600806573408E-03
  Surface tension*area energy for atom 14: 1.432113161220E-01
  Surface tension*area energy for atom 15: 1.429898324905E-01
  Surface tension*area energy for atom 16: 3.541586603809E-02
  Surface tension*area energy for atom 17: 1.852489093789E-01
  Surface tension*area energy for atom 18: 1.596011048523E-01
  Surface tension*area energy for atom 19: 1.594682146734E-01

Total surface tension energy: 2.12748 kJ/mol

Total solvent accessible volume: 298.053 A^3

Total pressure*volume energy: 71.3539 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.635406071935E+00
  WCA energy for atom 1: -5.957247427848E+00
  WCA energy for atom 2: -5.524801144538E+00
  WCA energy for atom 3: -5.522294168859E+00
  WCA energy for atom 4: -1.605314409440E+00
  WCA energy for atom 5: -1.701051761776E+00
  WCA energy for atom 6: -1.606669162773E+00
  WCA energy for atom 7: -1.442505934938E+00
  WCA energy for atom 8: -1.443059002759E+00
  WCA energy for atom 9: -1.328947132810E+00
  WCA energy for atom 10: -1.328906972440E+00
  WCA energy for atom 11: -1.331566344214E+00
  WCA energy for atom 12: -1.328041776815E+00
  WCA energy for atom 13: -5.937562025661E+00
  WCA energy for atom 14: -1.442277774427E+00
  WCA energy for atom 15: -1.442777091510E+00
  WCA energy for atom 16: -6.602262542378E+00
  WCA energy for atom 17: -1.698172146664E+00
  WCA energy for atom 18: -1.600970858835E+00
  WCA energy for atom 19: -1.600841970217E+00

Total WCA energy: -57.0807 kJ/mol

Total non-polar energy = 1.640068943201E+01 kJ/mol
----------------------------------------
CALCULATION #7 (solvated-isobutane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.464676753463E+00
  SASA for atom 1: 1.984493338158E+01
  SASA for atom 2: 1.778643845361E+01
  SASA for atom 3: 1.671289426332E+01
  SASA for atom 4: 0.000000000000E+00
  SASA for atom 5: 3.531879535319E+00
  SASA for atom 6: 1.673895116114E+01
  SASA for atom 7: 1.793756846098E+01
  SASA for atom 8: 1.973549441072E+01
  SASA for atom 9: 1.710895911022E+01
  SASA for atom 10: 4.599657069253E+00
  SASA for atom 11: 1.937069784121E+01
  SASA for atom 12: 1.654613011726E+01
  SASA for atom 13: 1.936548646165E+01

Total solvent accessible surface area: 192.744 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.944975240444E-02
  Surface tension*area energy for atom 1: 1.686819337434E-01
  Surface tension*area energy for atom 2: 1.511847268556E-01
  Surface tension*area energy for atom 3: 1.420596012382E-01
  Surface tension*area energy for atom 4: 0.000000000000E+00
  Surface tension*area energy for atom 5: 3.002097605021E-02
  Surface tension*area energy for atom 6: 1.422810848697E-01
  Surface tension*area energy for atom 7: 1.524693319183E-01
  Surface tension*area energy for atom 8: 1.677517024912E-01
  Surface tension*area energy for atom 9: 1.454261524369E-01
  Surface tension*area energy for atom 10: 3.909708508865E-02
  Surface tension*area energy for atom 11: 1.646509316503E-01
  Surface tension*area energy for atom 12: 1.406421059967E-01
  Surface tension*area energy for atom 13: 1.646066349240E-01

Total surface tension energy: 1.63832 kJ/mol

Total solvent accessible volume: 218.943 A^3

Total pressure*volume energy: 52.415 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.381016335247E+00
  WCA energy for atom 1: -1.612317964554E+00
  WCA energy for atom 2: -1.588013719598E+00
  WCA energy for atom 3: -1.532162371190E+00
  WCA energy for atom 4: -5.987950445279E+00
  WCA energy for atom 5: -6.393089030861E+00
  WCA energy for atom 6: -1.533454887042E+00
  WCA energy for atom 7: -1.587650918485E+00
  WCA energy for atom 8: -1.614083521570E+00
  WCA energy for atom 9: -1.442402031577E+00
  WCA energy for atom 10: -6.408813541353E+00
  WCA energy for atom 11: -1.605830214390E+00
  WCA energy for atom 12: -1.529385873788E+00
  WCA energy for atom 13: -1.605662490385E+00

Total WCA energy: -40.8218 kJ/mol

Total non-polar energy = 1.323144287435E+01 kJ/mol
----------------------------------------
CALCULATION #8 (solvated-methane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 1.231304303117E+01
  SASA for atom 1: 2.323233009850E+01
  SASA for atom 2: 2.345641941977E+01
  SASA for atom 3: 2.377431357320E+01
  SASA for atom 4: 2.264344420771E+01

Total solvent accessible surface area: 105.42 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 1.046608657649E-01
  Surface tension*area energy for atom 1: 1.974748058372E-01
  Surface tension*area energy for atom 2: 1.993795650680E-01
  Surface tension*area energy for atom 3: 2.020816653722E-01
  Surface tension*area energy for atom 4: 1.924692757655E-01

Total surface tension energy: 0.896066 kJ/mol

Total solvent accessible volume: 95.985 A^3

Total pressure*volume energy: 22.9788 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -8.133807570805E+00
  WCA energy for atom 1: -1.962181541765E+00
  WCA energy for atom 2: -1.964078319162E+00
  WCA energy for atom 3: -1.963015006647E+00
  WCA energy for atom 4: -1.957425549100E+00

Total WCA energy: -15.9805 kJ/mol

Total non-polar energy = 7.894367190329E+00 kJ/mol
----------------------------------------
CALCULATION #9 (solvated-neopentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 2.441701074100E+00
  SASA for atom 1: 1.663993494942E+01
  SASA for atom 2: 1.715586152630E+01
  SASA for atom 3: 1.645753666466E+01
  SASA for atom 4: 0.000000000000E+00
  SASA for atom 5: 2.389432243768E+00
  SASA for atom 6: 1.638457735076E+01
  SASA for atom 7: 1.667641460637E+01
  SASA for atom 8: 1.721839808108E+01
  SASA for atom 9: 2.419300146815E+00
  SASA for atom 10: 1.640021148945E+01
  SASA for atom 11: 1.666599184724E+01
  SASA for atom 12: 1.719234118325E+01
  SASA for atom 13: 2.449168049862E+00
  SASA for atom 14: 1.723403221977E+01
  SASA for atom 15: 1.639500010989E+01
  SASA for atom 16: 1.663472356985E+01

Total solvent accessible surface area: 210.755 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.075445912985E-02
  Surface tension*area energy for atom 1: 1.414394470700E-01
  Surface tension*area energy for atom 2: 1.458248229736E-01
  Surface tension*area energy for atom 3: 1.398890616496E-01
  Surface tension*area energy for atom 4: 0.000000000000E+00
  Surface tension*area energy for atom 5: 2.031017407203E-02
  Surface tension*area energy for atom 6: 1.392689074814E-01
  Surface tension*area energy for atom 7: 1.417495241541E-01
  Surface tension*area energy for atom 8: 1.463563836891E-01
  Surface tension*area energy for atom 9: 2.056405124793E-02
  Surface tension*area energy for atom 10: 1.394017976603E-01
  Surface tension*area energy for atom 11: 1.416609307015E-01
  Surface tension*area energy for atom 12: 1.461349000577E-01
  Surface tension*area energy for atom 13: 2.081792842383E-02
  Surface tension*area energy for atom 14: 1.464892738680E-01
  Surface tension*area energy for atom 15: 1.393575009340E-01
  Surface tension*area energy for atom 16: 1.413951503437E-01

Total surface tension energy: 1.79141 kJ/mol

Total solvent accessible volume: 251.127 A^3

Total pressure*volume energy: 60.1198 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.011082520236E+00
  WCA energy for atom 1: -1.497367782613E+00
  WCA energy for atom 2: -1.498546483218E+00
  WCA energy for atom 3: -1.492562171495E+00
  WCA energy for atom 4: -5.447325863939E+00
  WCA energy for atom 5: -6.004516149175E+00
  WCA energy for atom 6: -1.492776531092E+00
  WCA energy for atom 7: -1.496078170066E+00
  WCA energy for atom 8: -1.501529655270E+00
  WCA energy for atom 9: -5.996267554365E+00
  WCA energy for atom 10: -1.492194267752E+00
  WCA energy for atom 11: -1.496027211216E+00
  WCA energy for atom 12: -1.500561393960E+00
  WCA energy for atom 13: -6.000218612907E+00
  WCA energy for atom 14: -1.500859921426E+00
  WCA energy for atom 15: -1.492908499790E+00
  WCA energy for atom 16: -1.494057174414E+00

Total WCA energy: -47.4149 kJ/mol

Total non-polar energy = 1.449633815052E+01 kJ/mol
----------------------------------------
CALCULATION #10 (solvated-pentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 3.285469335181E-01
  SASA for atom 3: 7.466975761774E-01
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.655655287639E+01
  SASA for atom 8: 1.655134149682E+01
  SASA for atom 9: 1.360170066332E+01
  SASA for atom 10: 1.357043238593E+01
  SASA for atom 11: 1.685881289113E+01
  SASA for atom 12: 1.687444702982E+01
  SASA for atom 13: 4.196440378117E+00
  SASA for atom 14: 1.881308022781E+01
  SASA for atom 15: 1.882350298694E+01
  SASA for atom 16: 2.182004623652E+01

Total solvent accessible surface area: 222.524 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 2.792648934903E-03
  Surface tension*area energy for atom 3: 6.346929397508E-03
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.407306994493E-01
  Surface tension*area energy for atom 8: 1.406864027230E-01
  Surface tension*area energy for atom 9: 1.156144556382E-01
  Surface tension*area energy for atom 10: 1.153486752804E-01
  Surface tension*area energy for atom 11: 1.432999095746E-01
  Surface tension*area energy for atom 12: 1.434327997535E-01
  Surface tension*area energy for atom 13: 3.566974321399E-02
  Surface tension*area energy for atom 14: 1.599111819364E-01
  Surface tension*area energy for atom 15: 1.599997753890E-01
  Surface tension*area energy for atom 16: 1.854703930104E-01

Total surface tension energy: 1.89145 kJ/mol

Total solvent accessible volume: 258.93 A^3

Total pressure*volume energy: 61.9878 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.655804319869E+00
  WCA energy for atom 1: -6.027315962813E+00
  WCA energy for atom 2: -5.696430965386E+00
  WCA energy for atom 3: -6.016749084714E+00
  WCA energy for atom 4: -1.608595384643E+00
  WCA energy for atom 5: -1.703300955380E+00
  WCA energy for atom 6: -1.609931495887E+00
  WCA energy for atom 7: -1.457107525189E+00
  WCA energy for atom 8: -1.457741620594E+00
  WCA energy for atom 9: -1.354235498709E+00
  WCA energy for atom 10: -1.354106470090E+00
  WCA energy for atom 11: -1.456736412636E+00
  WCA energy for atom 12: -1.455995435596E+00
  WCA energy for atom 13: -6.633650611186E+00
  WCA energy for atom 14: -1.605996088477E+00
  WCA energy for atom 15: -1.606549890103E+00
  WCA energy for atom 16: -1.700042300035E+00

Total WCA energy: -49.4003 kJ/mol

Total non-polar energy = 1.447900211546E+01 kJ/mol
----------------------------------------
CALCULATION #11 (solvated-propane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.173464698754E+00
  SASA for atom 1: 1.931858404557E+01
  SASA for atom 2: 2.014198201675E+01
  SASA for atom 3: 2.149694070352E+01
  SASA for atom 4: 1.904078819252E+00
  SASA for atom 5: 2.067354273233E+01
  SASA for atom 6: 1.937590922077E+01
  SASA for atom 7: 3.098794941136E+00
  SASA for atom 8: 1.942802301642E+01
  SASA for atom 9: 1.973028303116E+01
  SASA for atom 10: 2.204934693736E+01

Total solvent accessible surface area: 170.391 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.697444993941E-02
  Surface tension*area energy for atom 1: 1.642079643873E-01
  Surface tension*area energy for atom 2: 1.712068471424E-01
  Surface tension*area energy for atom 3: 1.827239959799E-01
  Surface tension*area energy for atom 4: 1.618466996365E-02
  Surface tension*area energy for atom 5: 1.757251132248E-01
  Surface tension*area energy for atom 6: 1.646952283766E-01
  Surface tension*area energy for atom 7: 2.633975699966E-02
  Surface tension*area energy for atom 8: 1.651381956396E-01
  Surface tension*area energy for atom 9: 1.677074057649E-01
  Surface tension*area energy for atom 10: 1.874194489675E-01

Total surface tension energy: 1.44832 kJ/mol

Total solvent accessible volume: 183.573 A^3

Total pressure*volume energy: 43.9474 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.818670105515E+00
  WCA energy for atom 1: -1.641297645338E+00
  WCA energy for atom 2: -1.649584120441E+00
  WCA energy for atom 3: -1.711408141255E+00
  WCA energy for atom 4: -6.624720142882E+00
  WCA energy for atom 5: -1.610117050515E+00
  WCA energy for atom 6: -1.596858009746E+00
  WCA energy for atom 7: -6.816460624835E+00
  WCA energy for atom 8: -1.642782751806E+00
  WCA energy for atom 9: -1.645779566650E+00
  WCA energy for atom 10: -1.714436154542E+00

Total WCA energy: -33.4721 kJ/mol

Total non-polar energy = 1.192358496286E+01 kJ/mol
----------------------------------------
PRINT STATEMENTS

print APOL energy 1 (solvated-2-methylbutane) end
  Global net APOL energy = 1.439739455792E+01 kJ/mol

print APOL energy 2 (solvated-butane) end
  Global net APOL energy = 1.208346456826E+01 kJ/mol

print APOL energy 3 (solvated-cyclohexane) end
  Global net APOL energy = 1.354016672221E+01 kJ/mol

print APOL energy 4 (solvated-cyclopentane) end
  Global net APOL energy = 9.363673200142E+00 kJ/mol

print APOL energy 5 (solvated-ethane) end
  Global net APOL energy = 9.422717598546E+00 kJ/mol

print APOL energy 6 (solvated-hexane) end
  Global net APOL energy = 1.640068943201E+01 kJ/mol

print APOL energy 7 (solvated-isobutane) end
  Global net APOL energy = 1.323144287435E+01 kJ/mol

print APOL energy 8 (solvated-methane) end
  Global net APOL energy = 7.894367190329E+00 kJ/mol

print APOL energy 9 (solvated-neopentane) end
  Global net APOL energy = 1.449633815052E+01 kJ/mol

print APOL energy 10 (solvated-pentane) end
  Global net APOL energy = 1.447900211546E+01 kJ/mol

print APOL energy 11 (solvated-propane) end
  Global net APOL energy = 1.192358496286E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 11 molecules
Final memory usage:  0.001 MB total, 2.267 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file alkanes.out
RESULT 14.39739455792
RESULT 12.08346456826
RESULT 13.54016672221
RESULT 9.363673200142
RESULT 9.422717598546
RESULT 16.40068943201
RESULT 13.23144287435
RESULT 7.894367190329
RESULT 14.49633815052
RESULT 14.47900211546
RESULT 11.92358496286
Testing computed result 1.439739455792E+01 against expected result 1.439739E+01
*** PASSED ***
Testing computed result 1.208346456826E+01 against expected result 1.208346E+01
*** PASSED ***
Testing computed result 1.354016672221E+01 against expected result 1.354017E+01
*** PASSED ***
Testing computed result 9.363673200142E+00 against expected result 9.363673E+00
*** PASSED ***
Testing computed result 9.422717598546E+00 against expected result 9.422718E+00
*** PASSED ***
Testing computed result 1.640068943201E+01 against expected result 1.640069E+01
*** PASSED ***
Testing computed result 1.323144287435E+01 against expected result 1.323144E+01
*** PASSED ***
Testing computed result 7.894367190329E+00 against expected result 7.894367E+00
*** PASSED ***
Testing computed result 1.449633815052E+01 against expected result 1.449634E+01
*** PASSED ***
Testing computed result 1.447900211546E+01 against expected result 1.447900E+01
*** PASSED ***
Testing computed result 1.192358496286E+01 against expected result 1.192358E+01
*** PASSED ***
Elapsed time: 5.269747 seconds
--------------------------------------------------------------------------------
Total elapsed time: 5.269747 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for FKBP section
--------------------------------------------------------------------------------
Testing input file 1d7h-dmso-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  1d7h-dmso-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file 1d7h-dmso-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7h-dmso-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1673 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dmso-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  10 atoms
  Centered at (1.775e+01, 1.777e+01, 2.049e+01)
  Net charge 2.78e-17 e
Reading PQR-format atom data from 1d7h-min.pqr.
  1663 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 122.059 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.060899690259E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.276523673491E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.399234956777E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.610066575192E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dmso-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.961107503213E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dmso-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.121048606059E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dmso-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.751571424823E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dmso-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.339101343121E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7h-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.058410584089E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7h-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.205385249581E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7h-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.395961902233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7h-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.538248433997E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.335429017008E+03 kJ/mol
  Global net ELEC energy = -3.335429017008E+03 kJ/mol

print energy 6 (dmso-solv-fine) - 8 (dmso-ref-fine) end
  Local net energy (PE 0) = -2.180527370616E+01 kJ/mol
  Global net ELEC energy = -2.180527370616E+01 kJ/mol

print energy 10 (1d7h-solv-fine) - 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = -3.328631844166E+03 kJ/mol
  Global net ELEC energy = -3.328631844166E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dmso-solv-fine) + 8 (dmso-ref-fine) - 10 (1d7h-solv-fine) + 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = 1.500810086371E+01 kJ/mol
  Global net ELEC energy = 1.500810086371E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 221.696 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7h-dmso-mol.out
RESULT 10608.99690259
RESULT 42765.23673491
RESULT 13992.34956777
RESULT 46100.66575192
RESULT 39.61107503213
RESULT 712.1048606059
RESULT 67.51571424823
RESULT 733.9101343121
RESULT 10584.10584089
RESULT 42053.85249581
RESULT 13959.61902233
RESULT 45382.48433997
RESULT -3335.429017008
RESULT -21.80527370616
RESULT -3328.631844166
RESULT 15.00810086371
Testing computed result 1.060899690259E+04 against expected result 1.060900E+04
*** PASSED ***
Testing computed result 4.276523673491E+04 against expected result 4.276524E+04
*** PASSED ***
Testing computed result 1.399234956777E+04 against expected result 1.399235E+04
*** PASSED ***
Testing computed result 4.610066575192E+04 against expected result 4.610067E+04
*** PASSED ***
Testing computed result 3.961107503213E+01 against expected result 3.961108E+01
*** PASSED ***
Testing computed result 7.121048606059E+02 against expected result 7.121049E+02
*** PASSED ***
Testing computed result 6.751571424823E+01 against expected result 6.751571E+01
*** PASSED ***
Testing computed result 7.339101343121E+02 against expected result 7.339101E+02
*** PASSED ***
Testing computed result 1.058410584089E+04 against expected result 1.058411E+04
*** PASSED ***
Testing computed result 4.205385249581E+04 against expected result 4.205385E+04
*** PASSED ***
Testing computed result 1.395961902233E+04 against expected result 1.395962E+04
*** PASSED ***
Testing computed result 4.538248433997E+04 against expected result 4.538248E+04
*** PASSED ***
Testing computed result 1.500810086371E+01 against expected result 1.500810E+01
*** PASSED ***
Elapsed time: 4.564190 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7h-dmso-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  1d7h-dmso-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file 1d7h-dmso-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7h-dmso-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1673 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dmso-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  10 atoms
  Centered at (1.775e+01, 1.777e+01, 2.049e+01)
  Net charge 2.78e-17 e
Reading PQR-format atom data from 1d7h-min.pqr.
  1663 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 122.059 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.074948704824E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.289487256481E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.399234956777E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.610066575192E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dmso-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.719709905887E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dmso-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.125747080979E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dmso-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.751571424823E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dmso-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.339101343121E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7h-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.071654753674E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7h-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.218178203716E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7h-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.395961902233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7h-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.538248433997E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.205793187109E+03 kJ/mol
  Global net ELEC energy = -3.205793187109E+03 kJ/mol

print energy 6 (dmso-solv-fine) - 8 (dmso-ref-fine) end
  Local net energy (PE 0) = -2.133542621421E+01 kJ/mol
  Global net ELEC energy = -2.133542621421E+01 kJ/mol

print energy 10 (1d7h-solv-fine) - 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = -3.200702302816E+03 kJ/mol
  Global net ELEC energy = -3.200702302816E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dmso-solv-fine) + 8 (dmso-ref-fine) - 10 (1d7h-solv-fine) + 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = 1.624454192073E+01 kJ/mol
  Global net ELEC energy = 1.624454192073E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 221.696 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7h-dmso-smol.out
RESULT 10749.48704824
RESULT 42894.87256481
RESULT 13992.34956777
RESULT 46100.66575192
RESULT 37.19709905887
RESULT 712.5747080979
RESULT 67.51571424823
RESULT 733.9101343121
RESULT 10716.54753674
RESULT 42181.78203716
RESULT 13959.61902233
RESULT 45382.48433997
RESULT -3205.793187109
RESULT -21.33542621421
RESULT -3200.702302816
RESULT 16.24454192073
Testing computed result 1.074948704824E+04 against expected result 1.074949E+04
*** PASSED ***
Testing computed result 4.289487256481E+04 against expected result 4.289487E+04
*** PASSED ***
Testing computed result 1.399234956777E+04 against expected result 1.399235E+04
*** PASSED ***
Testing computed result 4.610066575192E+04 against expected result 4.610067E+04
*** PASSED ***
Testing computed result 3.719709905887E+01 against expected result 3.719710E+01
*** PASSED ***
Testing computed result 7.125747080979E+02 against expected result 7.125747E+02
*** PASSED ***
Testing computed result 6.751571424823E+01 against expected result 6.751571E+01
*** PASSED ***
Testing computed result 7.339101343121E+02 against expected result 7.339101E+02
*** PASSED ***
Testing computed result 1.071654753674E+04 against expected result 1.071655E+04
*** PASSED ***
Testing computed result 4.218178203716E+04 against expected result 4.218178E+04
*** PASSED ***
Testing computed result 1.395961902233E+04 against expected result 1.395962E+04
*** PASSED ***
Testing computed result 4.538248433997E+04 against expected result 4.538248E+04
*** PASSED ***
Testing computed result 1.624454192073E+01 against expected result 1.624454E+01
*** PASSED ***
Elapsed time: 4.389752 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7i-dss-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  1d7i-dss-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file 1d7i-dss-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7i-dss-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1677 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dss-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.734e+01, 1.921e+01, 2.050e+01)
  Net charge -8.33e-17 e
Reading PQR-format atom data from 1d7i-min.pqr.
  1663 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 122.425 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.160578033846E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.955701871716E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.264965939588E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.301801664829E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dss-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.431133325426E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dss-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.677348113184E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dss-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.171079106781E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dss-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.697869784185E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7i-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.040108332204E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7i-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.787747796627E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7i-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.252495566243E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7i-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.133237922574E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.460997931137E+03 kJ/mol
  Global net ELEC energy = -3.460997931137E+03 kJ/mol

print energy 6 (dss-solv-fine) - 8 (dss-ref-fine) end
  Local net energy (PE 0) = -2.052167100108E+01 kJ/mol
  Global net ELEC energy = -2.052167100108E+01 kJ/mol

print energy 10 (1d7i-solv-fine) - 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = -3.454901259473E+03 kJ/mol
  Global net ELEC energy = -3.454901259473E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dss-solv-fine) + 8 (dss-ref-fine) - 10 (1d7i-solv-fine) + 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = 1.442499933668E+01 kJ/mol
  Global net ELEC energy = 1.442499933668E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 222.305 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7i-dss-mol.out
RESULT 9160.578033846
RESULT 39557.01871716
RESULT 12649.65939588
RESULT 43018.01664829
RESULT 94.31133325426
RESULT 1677.348113184
RESULT 117.1079106781
RESULT 1697.869784185
RESULT 9040.108332204
RESULT 37877.47796627
RESULT 12524.95566243
RESULT 41332.37922574
RESULT -3460.997931137
RESULT -20.52167100108
RESULT -3454.901259473
RESULT 14.42499933668
Testing computed result 9.160578033846E+03 against expected result 9.160578E+03
*** PASSED ***
Testing computed result 3.955701871716E+04 against expected result 3.955702E+04
*** PASSED ***
Testing computed result 1.264965939588E+04 against expected result 1.264966E+04
*** PASSED ***
Testing computed result 4.301801664829E+04 against expected result 4.301802E+04
*** PASSED ***
Testing computed result 9.431133325426E+01 against expected result 9.431133E+01
*** PASSED ***
Testing computed result 1.677348113184E+03 against expected result 1.677348E+03
*** PASSED ***
Testing computed result 1.171079106781E+02 against expected result 1.171079E+02
*** PASSED ***
Testing computed result 1.697869784185E+03 against expected result 1.697870E+03
*** PASSED ***
Testing computed result 9.040108332204E+03 against expected result 9.040108E+03
*** PASSED ***
Testing computed result 3.787747796627E+04 against expected result 3.787748E+04
*** PASSED ***
Testing computed result 1.252495566243E+04 against expected result 1.252496E+04
*** PASSED ***
Testing computed result 4.133237922574E+04 against expected result 4.133238E+04
*** PASSED ***
Testing computed result 1.442499933668E+01 against expected result 1.442501E+01
*** PASSED ***
Elapsed time: 4.534665 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7i-dss-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  1d7i-dss-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file 1d7i-dss-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7i-dss-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1677 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dss-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.734e+01, 1.921e+01, 2.050e+01)
  Net charge -8.33e-17 e
Reading PQR-format atom data from 1d7i-min.pqr.
  1663 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 122.425 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.634884642408E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.003177540425E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.264965939588E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.301801664829E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dss-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.942232645345E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dss-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.677798535473E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dss-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.171079106781E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dss-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.697869784185E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7i-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.507068451372E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7i-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.835075772299E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7i-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.252495566243E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7i-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.133237922574E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -2.986241244040E+03 kJ/mol
  Global net ELEC energy = -2.986241244040E+03 kJ/mol

print energy 6 (dss-solv-fine) - 8 (dss-ref-fine) end
  Local net energy (PE 0) = -2.007124871262E+01 kJ/mol
  Global net ELEC energy = -2.007124871262E+01 kJ/mol

print energy 10 (1d7i-solv-fine) - 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = -2.981621502756E+03 kJ/mol
  Global net ELEC energy = -2.981621502756E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dss-solv-fine) + 8 (dss-ref-fine) - 10 (1d7i-solv-fine) + 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = 1.545150742844E+01 kJ/mol
  Global net ELEC energy = 1.545150742844E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 222.305 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7i-dss-smol.out
RESULT 9634.884642408
RESULT 40031.77540425
RESULT 12649.65939588
RESULT 43018.01664829
RESULT 79.42232645345
RESULT 1677.798535473
RESULT 117.1079106781
RESULT 1697.869784185
RESULT 9507.068451372
RESULT 38350.75772299
RESULT 12524.95566243
RESULT 41332.37922574
RESULT -2986.24124404
RESULT -20.07124871262
RESULT -2981.621502756
RESULT 15.45150742844
Testing computed result 9.634884642408E+03 against expected result 9.634885E+03
*** PASSED ***
Testing computed result 4.003177540425E+04 against expected result 4.003178E+04
*** PASSED ***
Testing computed result 1.264965939588E+04 against expected result 1.264966E+04
*** PASSED ***
Testing computed result 4.301801664829E+04 against expected result 4.301802E+04
*** PASSED ***
Testing computed result 7.942232645345E+01 against expected result 7.942233E+01
*** PASSED ***
Testing computed result 1.677798535473E+03 against expected result 1.677799E+03
*** PASSED ***
Testing computed result 1.171079106781E+02 against expected result 1.171079E+02
*** PASSED ***
Testing computed result 1.697869784185E+03 against expected result 1.697870E+03
*** PASSED ***
Testing computed result 9.507068451372E+03 against expected result 9.507068E+03
*** PASSED ***
Testing computed result 3.835075772299E+04 against expected result 3.835076E+04
*** PASSED ***
Testing computed result 1.252495566243E+04 against expected result 1.252496E+04
*** PASSED ***
Testing computed result 4.133237922574E+04 against expected result 4.133238E+04
*** PASSED ***
Testing computed result 1.545150742844E+01 against expected result 1.545150E+01
*** PASSED ***
Elapsed time: 4.382371 seconds
--------------------------------------------------------------------------------
Total elapsed time: 17.870978 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for hca-bind section
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acet.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (-6.028e+00, 3.898e+00, 1.518e+01)
  Net charge -1.00e+00 e
Reading PQR-format atom data from hca.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  2482 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex.pqr.
  2500 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge -1.02e-14 e
Preparing to run 9 PBE calculations.
----------------------------------------
CALCULATION #1 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 62.727 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.213600726771E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.825764811255E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.458471211905E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 146.516 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.093606095527E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #5 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.515433544464E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.786369323561E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.105322784838E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.533304996252E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #9 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.850429388099E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (acet) - 2 (hca) end
  Local net energy (PE 0) = -5.246475812665E+01 kJ/mol
  Global net ELEC energy = -5.246475812665E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 245.725 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol.out
RESULT 221.3600726771
RESULT 1825.764811255
RESULT 6458.471211905
RESULT 20936.06095527
RESULT 151543.3544464
RESULT 178636.9323561
RESULT 21053.22784838
RESULT 153330.4996252
RESULT 185042.9388099
RESULT -52.46475812665
Testing computed result 2.213600726771E+02 against expected result 2.213601E+02
*** PASSED ***
Testing computed result 1.825764811255E+03 against expected result 1.825765E+03
*** PASSED ***
Testing computed result 6.458471211905E+03 against expected result 6.458471E+03
*** PASSED ***
Testing computed result 2.093606095527E+04 against expected result 2.093606E+04
*** PASSED ***
Testing computed result 1.515433544464E+05 against expected result 1.515434E+05
*** PASSED ***
Testing computed result 1.786369323561E+05 against expected result 1.786369E+05
*** PASSED ***
Testing computed result 2.105322784838E+04 against expected result 2.105323E+04
*** PASSED ***
Testing computed result 1.533304996252E+05 against expected result 1.533305E+05
*** PASSED ***
Testing computed result 1.850429388099E+05 against expected result 1.850429E+05
*** PASSED ***
Testing computed result -5.246475812665E+01 against expected result -5.246476E+01
*** PASSED ***
Elapsed time: 3.998695 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acet.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (-6.028e+00, 3.898e+00, 1.518e+01)
  Net charge -1.00e+00 e
Reading PQR-format atom data from hca.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  2482 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex.pqr.
  2500 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge -1.02e-14 e
Preparing to run 9 PBE calculations.
----------------------------------------
CALCULATION #1 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 62.727 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.884888131017E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.820045922544E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.460002606908E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 146.516 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.189161497021E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #5 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.520000494925E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.790436191580E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.195842512312E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.537771604355E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #9 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.854495619747E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (acet) - 2 (hca) end
  Local net energy (PE 0) = -5.405979017066E+01 kJ/mol
  Global net ELEC energy = -5.405979017066E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 245.725 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol.out
RESULT 188.4888131017
RESULT 1820.045922544
RESULT 6460.002606908
RESULT 21891.61497021
RESULT 152000.0494925
RESULT 179043.619158
RESULT 21958.42512312
RESULT 153777.1604355
RESULT 185449.5619747
RESULT -54.05979017066
Testing computed result 1.884888131017E+02 against expected result 1.884888E+02
*** PASSED ***
Testing computed result 1.820045922544E+03 against expected result 1.820046E+03
*** PASSED ***
Testing computed result 6.460002606908E+03 against expected result 6.460003E+03
*** PASSED ***
Testing computed result 2.189161497021E+04 against expected result 2.189161E+04
*** PASSED ***
Testing computed result 1.520000494925E+05 against expected result 1.520000E+05
*** PASSED ***
Testing computed result 1.790436191580E+05 against expected result 1.790436E+05
*** PASSED ***
Testing computed result 2.195842512312E+04 against expected result 2.195843E+04
*** PASSED ***
Testing computed result 1.537771604355E+05 against expected result 1.537772E+05
*** PASSED ***
Testing computed result 1.854495619747E+05 against expected result 1.854496E+05
*** PASSED ***
Testing computed result -5.405979017066E+01 against expected result -5.405978E+01
*** PASSED ***
Elapsed time: 3.781764 seconds
--------------------------------------------------------------------------------
Total elapsed time: 7.780459 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for ionize section
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading XML-format atom data from acetic-acid.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.67e-16 e
Reading XML-format atom data from acetate.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.00e+00 e
Reading XML-format atom data from proton.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (1.780e-01, -1.286e+00, 2.937e+00)
  Net charge 1.00e+00 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 61.598 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.823898055191E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.793274462353E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.846917564309E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.815953282539E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.219846763777E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.392741988698E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.420373979905E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.412716615065E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.862359524598E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #10 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.288156251610E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.162533113906E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.585616091973E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (acetic-solv) - 2 (acetic-ref) end
  Local net energy (PE 0) = -2.267882018629E+01 kJ/mol
  Global net ELEC energy = -2.267882018629E+01 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) end
  Local net energy (PE 0) = -1.997462636633E+02 kJ/mol
  Global net ELEC energy = -1.997462636633E+02 kJ/mol

print energy 5 (proton-solv) - 6 (proton-ref) end
  Local net energy (PE 0) = -2.974598403628E+02 kJ/mol
  Global net ELEC energy = -2.974598403628E+02 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) + 5 (proton-solv) - 6 (proton-ref) - 1 (acetic-solv) + 2 (acetic-ref) end
  Local net energy (PE 0) = -4.745272838398E+02 kJ/mol
  Global net ELEC energy = -4.745272838398E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 122.404 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol.out
RESULT 5823.898055191
RESULT 9793.274462353
RESULT 5846.917564309
RESULT 9815.953282539
RESULT 8219.846763777
RESULT 13927.41988698
RESULT 8420.373979905
RESULT 14127.16615065
RESULT 3862.359524598
RESULT 6288.15625161
RESULT 4162.533113906
RESULT 6585.616091973
RESULT -22.67882018629
RESULT -199.7462636633
RESULT -297.4598403628
RESULT -474.5272838398
Testing computed result 5.823898055191E+03 against expected result 5.823898E+03
*** PASSED ***
Testing computed result 9.793274462353E+03 against expected result 9.793274E+03
*** PASSED ***
Testing computed result 5.846917564309E+03 against expected result 5.846918E+03
*** PASSED ***
Testing computed result 9.815953282539E+03 against expected result 9.815953E+03
*** PASSED ***
Testing computed result 8.219846763777E+03 against expected result 8.219847E+03
*** PASSED ***
Testing computed result 1.392741988698E+04 against expected result 1.392742E+04
*** PASSED ***
Testing computed result 8.420373979905E+03 against expected result 8.420374E+03
*** PASSED ***
Testing computed result 1.412716615065E+04 against expected result 1.412717E+04
*** PASSED ***
Testing computed result 3.862359524598E+03 against expected result 3.862360E+03
*** PASSED ***
Testing computed result 6.288156251610E+03 against expected result 6.288156E+03
*** PASSED ***
Testing computed result 4.162533113906E+03 against expected result 4.162533E+03
*** PASSED ***
Testing computed result 6.585616091973E+03 against expected result 6.585616E+03
*** PASSED ***
Testing computed result -2.267882018629E+01 against expected result -2.267882E+01
*** PASSED ***
Testing computed result -1.997462636633E+02 against expected result -1.997463E+02
*** PASSED ***
Testing computed result -2.974598403628E+02 against expected result -2.974598E+02
*** PASSED ***
Testing computed result -4.745272838398E+02 against expected result -4.745273E+02
*** PASSED ***
Elapsed time: 1.060952 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading XML-format atom data from acetic-acid.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.67e-16 e
Reading XML-format atom data from acetate.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.00e+00 e
Reading XML-format atom data from proton.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (1.780e-01, -1.286e+00, 2.937e+00)
  Net charge 1.00e+00 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 61.598 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.824172730822E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.793622759239E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.846917564309E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.815953282539E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.221328580569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.392867783119E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.420373979905E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.412716615065E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.863066835285E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #10 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.289649216644E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.162533113906E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.585616091973E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (acetic-solv) - 2 (acetic-ref) end
  Local net energy (PE 0) = -2.233052329981E+01 kJ/mol
  Global net ELEC energy = -2.233052329981E+01 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) end
  Local net energy (PE 0) = -1.984883194538E+02 kJ/mol
  Global net ELEC energy = -1.984883194538E+02 kJ/mol

print energy 5 (proton-solv) - 6 (proton-ref) end
  Local net energy (PE 0) = -2.959668753288E+02 kJ/mol
  Global net ELEC energy = -2.959668753288E+02 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) + 5 (proton-solv) - 6 (proton-ref) - 1 (acetic-solv) + 2 (acetic-ref) end
  Local net energy (PE 0) = -4.721246714828E+02 kJ/mol
  Global net ELEC energy = -4.721246714828E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 122.404 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol.out
RESULT 5824.172730822
RESULT 9793.622759239
RESULT 5846.917564309
RESULT 9815.953282539
RESULT 8221.328580569
RESULT 13928.67783119
RESULT 8420.373979905
RESULT 14127.16615065
RESULT 3863.066835285
RESULT 6289.649216644
RESULT 4162.533113906
RESULT 6585.616091973
RESULT -22.33052329981
RESULT -198.4883194538
RESULT -295.9668753288
RESULT -472.1246714828
Testing computed result 5.824172730822E+03 against expected result 5.824173E+03
*** PASSED ***
Testing computed result 9.793622759239E+03 against expected result 9.793623E+03
*** PASSED ***
Testing computed result 5.846917564309E+03 against expected result 5.846918E+03
*** PASSED ***
Testing computed result 9.815953282539E+03 against expected result 9.815953E+03
*** PASSED ***
Testing computed result 8.221328580569E+03 against expected result 8.221329E+03
*** PASSED ***
Testing computed result 1.392867783119E+04 against expected result 1.392868E+04
*** PASSED ***
Testing computed result 8.420373979905E+03 against expected result 8.420374E+03
*** PASSED ***
Testing computed result 1.412716615065E+04 against expected result 1.412717E+04
*** PASSED ***
Testing computed result 3.863066835285E+03 against expected result 3.863067E+03
*** PASSED ***
Testing computed result 6.289649216644E+03 against expected result 6.289649E+03
*** PASSED ***
Testing computed result 4.162533113906E+03 against expected result 4.162533E+03
*** PASSED ***
Testing computed result 6.585616091973E+03 against expected result 6.585616E+03
*** PASSED ***
Testing computed result -2.233052329981E+01 against expected result -2.233050E+01
*** PASSED ***
Testing computed result -1.984883194538E+02 against expected result -1.984883E+02
*** PASSED ***
Testing computed result -2.959668753288E+02 against expected result -2.959669E+02
*** PASSED ***
Testing computed result -4.721246714828E+02 against expected result -4.721247E+02
*** PASSED ***
Elapsed time: 1.012468 seconds
--------------------------------------------------------------------------------
Total elapsed time: 2.073420 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for ion-pmf section
--------------------------------------------------------------------------------
Testing input file ion-pmf.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  ion-pmf.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file ion-pmf.in...
rank 0 size 1...
Parsed input file.
Reading parameter data from parm.dat.
Got paths for 1 molecules
Reading PDB-format atom data from ion-pmf.pdb.
Vpmg_ibForce:  No force for zero ionic strength!
Vpmg_ibForce:  No force for zero ionic strength!
  2 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.106 MB total, 61.106 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  All-atom solvent forces will be calculated
  Total electrostatic energy = 7.839535983197E+03 kJ/mol
  Calculating forces...
  Printing per-atom forces for molecule 1 (kJ/mol/A)
  Legend:
    tot n -- total force for atom n
    qf  n -- fixed charge force for atom n
    db  n -- dielectric boundary force for atom n
    ib  n -- ionic boundary force for atom n
mgF  tot 0  -3.760e+03  -4.398e-05  -7.763e-05
mgF  qf  0  -3.767e+03  -1.730e-05  -2.384e-05
mgF  ib  0  0.000e+00  0.000e+00  0.000e+00
mgF  db  0  6.148e+00  -2.668e-05  -5.379e-05
mgF  tot 1  -3.596e+03  -5.403e-05  -1.012e-04
mgF  qf  1  -3.598e+03  -2.253e-05  -3.831e-05
mgF  ib  1  0.000e+00  0.000e+00  0.000e+00
mgF  db  1  2.883e+00  -3.150e-05  -6.291e-05
Vpmg_ibForce:  No force for zero ionic strength!
Vpmg_ibForce:  No force for zero ionic strength!
----------------------------------------
CALCULATION #2 (ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.106 MB total, 61.155 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  All-atom solvent forces will be calculated
  Total electrostatic energy = 8.964727588811E+03 kJ/mol
  Calculating forces...
  Printing per-atom forces for molecule 1 (kJ/mol/A)
  Legend:
    tot n -- total force for atom n
    qf  n -- fixed charge force for atom n
    db  n -- dielectric boundary force for atom n
    ib  n -- ionic boundary force for atom n
mgF  tot 0  -3.850e+03  -4.055e-06  -7.703e-06
mgF  qf  0  -3.850e+03  -4.055e-06  -7.703e-06
mgF  ib  0  0.000e+00  0.000e+00  0.000e+00
mgF  db  0  0.000e+00  0.000e+00  0.000e+00
mgF  tot 1  -3.514e+03  -4.163e-06  -7.690e-06
mgF  qf  1  -3.514e+03  -4.163e-06  -7.690e-06
mgF  ib  1  0.000e+00  0.000e+00  0.000e+00
mgF  db  1  0.000e+00  0.000e+00  0.000e+00
----------------------------------------
CALCULATION #3 (asolv): APOLAR
  Printing per atom forces (kJ/mol/A)
  Legend:
    tot  n -- Total force for atom n
    sasa n -- SASA force for atom n
    sav  n -- SAV force for atom n
    wca  n -- WCA force for atom n

    gamma    0.000720
    pressure 0.000000
    bconc    0.033000 

  tot  0 2.715e-02 9.130e-07 9.130e-07
  sasa 0 -1.100e+01 0.000e+00 0.000e+00
  sav  0 0.000e+00 0.000e+00 0.000e+00
  wca  0 -5.827e-01 -2.767e-05 -2.767e-05
  tot  1 -2.723e-02 9.133e-07 9.133e-07
  sasa 1 1.112e+01 0.000e+00 0.000e+00
  sav  1 0.000e+00 0.000e+00 0.000e+00
  wca  1 5.827e-01 -2.767e-05 -2.767e-05


Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 1.153275282828E+02
  SASA for atom 1: 1.153114143344E+02

Total solvent accessible surface area: 230.639 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 8.303582036361E-02
  Surface tension*area energy for atom 1: 8.302421832080E-02

Total surface tension energy: 0.16606 kJ/mol

Total solvent accessible volume: 0 A^3

Total pressure*volume energy: 0 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.909718359932E+00
  WCA energy for atom 1: -6.909422551724E+00

Total WCA energy: -13.8191 kJ/mol

Total non-polar energy = -1.365308087297E+01 kJ/mol
----------------------------------------
PRINT STATEMENTS

print energy 1 (solv) - 2 (ref) end
  Local net energy (PE 0) = -1.125191605614E+03 kJ/mol
  Global net ELEC energy = -1.125191605614E+03 kJ/mol
print force 1 (solv) - 2 (ref) end
  Printing per-atom forces (kJ/mol/A).
  Legend:
    tot n -- Total force for atom n
    qf  n -- Fixed charge force for atom n
    db  n -- Dielectric boundary force for atom n
    ib  n -- Ionic boundary force for atom n
    tot all -- Total force for system
  qf  0  8.398642197666E+01  -1.324564548552E-05  -1.613435632529E-05
  ib  0  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  db  0  6.148357059184E+00  -2.667517425897E-05  -5.378919678211E-05
  tot 0  9.013477903584E+01  -3.992081974449E-05  -6.992355310740E-05
  qf  1  -8.466423642736E+01  -1.836748045969E-05  -3.062224428458E-05
  ib  1  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  db  1  2.882739230548E+00  -3.149946357588E-05  -6.291495506459E-05
  tot 1  -8.178149719681E+01  -4.986694403557E-05  -9.353719934917E-05
  tot all 8.353281839029E+00  -8.978776378007E-05  -1.634607524566E-04

print APOL energy 1 (asolv) end
  Global net APOL energy = -1.365308087297E+01 kJ/mol

print APOL force 1 (asolv) end
  Printing per atom forces (kJ/mol/A)
  Legend:
    tot   n -- Total force for atom n
    sasa  n -- SASA force for atom n
    sav   n -- SAV force for atom n
    wca   n -- WCA force for atom n
    tot all -- Total force for system
  sasa  0  -1.099776974333E+01  0.000000000000E+00  0.000000000000E+00
  sav   0  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  wca   0  -5.826577086437E-01  -2.766670515801E-05  -2.766670515838E-05
  tot   0  -1.158042745197E+01  -2.766670515801E-05  -2.766670515838E-05
  sasa  1  1.111862435589E+01  0.000000000000E+00  0.000000000000E+00
  sav   1  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  wca   1  5.826560767576E-01  -2.767485007141E-05  -2.767485007183E-05
  tot   1  1.170128043265E+01  -2.767485007141E-05  -2.767485007183E-05
  tot all  1.208529806779E-01  -5.534155522943E-05  -5.534155523021E-05
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  60.711 MB total, 62.250 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file ion-pmf.out
RESULT 7839.535983197
RESULT 8964.727588811
RESULT -1125.191605614
RESULT -13.65308087297
Testing computed result 7.839535983197E+03 against expected result 7.839536E+03
*** PASSED ***
Testing computed result 8.964727588811E+03 against expected result 8.964728E+03
*** PASSED ***
Testing computed result -1.125191605614E+03 against expected result -1.125192E+03
*** PASSED ***
Elapsed time: 2.950460 seconds
--------------------------------------------------------------------------------
Total elapsed time: 2.950460 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for ion-protein section
--------------------------------------------------------------------------------
Testing input file apbs-mol-pdiel2.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-pdiel2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-pdiel2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.525554553704E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.967613272771E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.050875942181E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 1.559159533658E+01 kJ/mol
  Global net ELEC energy = 1.559159533658E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-pdiel2.out
RESULT 7525.554553704
RESULT 2967.613272771
RESULT 10508.75942181
RESULT 15.59159533658
Testing computed result 7.525554553704E+03 against expected result 7.525555E+03
*** PASSED ***
Testing computed result 2.967613272771E+03 against expected result 2.967613E+03
*** PASSED ***
Testing computed result 1.050875942181E+04 against expected result 1.050876E+04
*** PASSED ***
Testing computed result 1.559159533658E+01 against expected result 1.559160E+01
*** PASSED ***
Elapsed time: 6.537250 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-pdiel2.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-pdiel2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-pdiel2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.561237446444E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.974076897757E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.055886976547E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 2.355542126539E+01 kJ/mol
  Global net ELEC energy = 2.355542126539E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-pdiel2.out
RESULT 7561.237446444
RESULT 2974.076897757
RESULT 10558.86976547
RESULT 23.55542126539
Testing computed result 7.561237446444E+03 against expected result 7.561237E+03
*** PASSED ***
Testing computed result 2.974076897757E+03 against expected result 2.974077E+03
*** PASSED ***
Testing computed result 1.055886976547E+04 against expected result 1.055887E+04
*** PASSED ***
Testing computed result 2.355542126539E+01 against expected result 2.355542E+01
*** PASSED ***
Elapsed time: 5.763249 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-pdiel12.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-pdiel12.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-pdiel12.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.363584355927E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.110802147229E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.892691797082E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 1.802722643145E+01 kJ/mol
  Global net ELEC energy = 1.802722643145E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-pdiel12.out
RESULT 1363.584355927
RESULT 511.0802147229
RESULT 1892.691797082
RESULT 18.02722643145
Testing computed result 1.363584355927E+03 against expected result 1.363584E+03
*** PASSED ***
Testing computed result 5.110802147229E+02 against expected result 5.110802E+02
*** PASSED ***
Testing computed result 1.892691797082E+03 against expected result 1.892692E+03
*** PASSED ***
Testing computed result 1.802722643145E+01 against expected result 1.802723E+01
*** PASSED ***
Elapsed time: 5.055989 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-pdiel12.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-pdiel12.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-pdiel12.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.366571366426E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.108315415905E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.896685358215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 1.928245019843E+01 kJ/mol
  Global net ELEC energy = 1.928245019843E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-pdiel12.out
RESULT 1366.571366426
RESULT 510.8315415905
RESULT 1896.685358215
RESULT 19.28245019843
Testing computed result 1.366571366426E+03 against expected result 1.366571E+03
*** PASSED ***
Testing computed result 5.108315415905E+02 against expected result 5.108315E+02
*** PASSED ***
Testing computed result 1.896685358215E+03 against expected result 1.896685E+03
*** PASSED ***
Testing computed result 1.928245019843E+01 against expected result 1.928245E+01
*** PASSED ***
Elapsed time: 5.376175 seconds
--------------------------------------------------------------------------------
Total elapsed time: 22.732663 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for pka-lig section
--------------------------------------------------------------------------------
Testing input file apbs-mol-vdw.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-vdw.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-vdw.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 204.292 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.224988750664E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.049695084686E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.818450789522E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.008254338259E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.840918409896E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 534.806 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.113304681884E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 8.083515648730E+00 kJ/mol
  Global net ELEC energy = 8.083515648730E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 534.806 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-vdw.out
RESULT 2224.988750664
RESULT 10496.95084686
RESULT 181845.0789522
RESULT 300825.4338259
RESULT 184091.8409896
RESULT 311330.4681884
RESULT 8.08351564873
Testing computed result 2.224988750664E+03 against expected result 2.224989E+03
*** PASSED ***
Testing computed result 1.049695084686E+04 against expected result 1.049695E+04
*** PASSED ***
Testing computed result 1.818450789522E+05 against expected result 1.818451E+05
*** PASSED ***
Testing computed result 3.008254338259E+05 against expected result 3.008254E+05
*** PASSED ***
Testing computed result 1.840918409896E+05 against expected result 1.840918E+05
*** PASSED ***
Testing computed result 3.113304681884E+05 against expected result 3.113305E+05
*** PASSED ***
Testing computed result 8.083515648730E+00 against expected result 8.083516E+00
*** PASSED ***
Elapsed time: 5.549362 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-vdw.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-vdw.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-vdw.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 204.292 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.226793167046E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.050504485887E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.827976621645E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.017228546773E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.850819075387E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 534.806 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.122488625388E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 2.096300255723E+01 kJ/mol
  Global net ELEC energy = 2.096300255723E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 534.806 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-vdw.out
RESULT 2226.793167046
RESULT 10505.04485887
RESULT 182797.6621645
RESULT 301722.8546773
RESULT 185081.9075387
RESULT 312248.8625388
RESULT 20.96300255723
Testing computed result 2.226793167046E+03 against expected result 2.226793E+03
*** PASSED ***
Testing computed result 1.050504485887E+04 against expected result 1.050504E+04
*** PASSED ***
Testing computed result 1.827976621645E+05 against expected result 1.827977E+05
*** PASSED ***
Testing computed result 3.017228546773E+05 against expected result 3.017229E+05
*** PASSED ***
Testing computed result 1.850819075387E+05 against expected result 1.850819E+05
*** PASSED ***
Testing computed result 3.122488625388E+05 against expected result 3.122489E+05
*** PASSED ***
Testing computed result 2.096300255723E+01 against expected result 2.096296E+01
*** PASSED ***
Elapsed time: 4.841673 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-surf.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-surf.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol-surf.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 203.877 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.244350164274E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.052149475373E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.862615690066E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.051810884053E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.886625455219E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 494.601 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.158218439277E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 1.192607686581E+02 kJ/mol
  Global net ELEC energy = 1.192607686581E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 494.601 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-surf.out
RESULT 2244.350164274
RESULT 10521.49475373
RESULT 186261.5690066
RESULT 305181.0884053
RESULT 188662.5455219
RESULT 315821.8439277
RESULT 119.2607686581
Testing computed result 2.244350164274E+03 against expected result 2.244350E+03
*** PASSED ***
Testing computed result 1.052149475373E+04 against expected result 1.052149E+04
*** PASSED ***
Testing computed result 1.862615690066E+05 against expected result 1.862616E+05
*** PASSED ***
Testing computed result 3.051810884053E+05 against expected result 3.051811E+05
*** PASSED ***
Testing computed result 1.886625455219E+05 against expected result 1.886625E+05
*** PASSED ***
Testing computed result 3.158218439277E+05 against expected result 3.158218E+05
*** PASSED ***
Testing computed result 1.192607686581E+02 against expected result 1.192608E+02
*** PASSED ***
Elapsed time: 4.713685 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-surf.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-surf.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol-surf.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 203.877 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.251466789420E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.052814502873E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.864071689626E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.053319953673E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.888027142979E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 494.601 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.159690177241E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 1.088773280806E+02 kJ/mol
  Global net ELEC energy = 1.088773280806E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 494.601 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-surf.out
RESULT 2251.46678942
RESULT 10528.14502873
RESULT 186407.1689626
RESULT 305331.9953673
RESULT 188802.7142979
RESULT 315969.0177241
RESULT 108.8773280806
Testing computed result 2.251466789420E+03 against expected result 2.251467E+03
*** PASSED ***
Testing computed result 1.052814502873E+04 against expected result 1.052815E+04
*** PASSED ***
Testing computed result 1.864071689626E+05 against expected result 1.864072E+05
*** PASSED ***
Testing computed result 3.053319953673E+05 against expected result 3.053320E+05
*** PASSED ***
Testing computed result 1.888027142979E+05 against expected result 1.888027E+05
*** PASSED ***
Testing computed result 3.159690177241E+05 against expected result 3.159690E+05
*** PASSED ***
Testing computed result 1.088773280806E+02 against expected result 1.088773E+02
*** PASSED ***
Elapsed time: 4.439562 seconds
--------------------------------------------------------------------------------
Total elapsed time: 19.544282 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for point-pmf section
--------------------------------------------------------------------------------
Testing input file complex-0_1.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_1.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file complex-0_1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-2.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_1.pqr.
  2 atoms
  Centered at (-2.500e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.975920687031E+01 kJ/mol
  Fixed charge energy = 89.7592 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 88.6151 kJ/mol
  Per-atom energies:
      Atom 0:  8.975920687031E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.058277719334E+02 kJ/mol
  Fixed charge energy = 205.828 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 201.106 kJ/mol
  Per-atom energies:
      Atom 0:  1.069144350786E+02 kJ/mol
      Atom 1:  9.891333685475E+01 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 1.830820799027E+01 kJ/mol
  Global net ELEC energy = 1.830820799027E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.067 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_1.out
RESULT 97.76035707281
RESULT 89.75920687031
RESULT 205.8277719334
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 89.7592
RESULT 205.828
RESULT 96.5336
RESULT 88.6151
RESULT 201.106
RESULT 18.30820799027
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 8.975920687031E+01 against expected result 8.975921E+01
*** PASSED ***
Testing computed result 2.058277719334E+02 against expected result 2.058278E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 8.975920000000E+01 against expected result 8.975920E+01
*** PASSED ***
Testing computed result 2.058280000000E+02 against expected result 2.058280E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 8.861510000000E+01 against expected result 8.861510E+01
*** PASSED ***
Testing computed result 2.011060000000E+02 against expected result 2.011060E+02
*** PASSED ***
Testing computed result 1.830820799027E+01 against expected result 1.830821E+01
*** PASSED ***
Elapsed time: 0.232335 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_2.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file complex-0_2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_2.pqr.
  2 atoms
  Centered at (-2.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.017611498797E+02 kJ/mol
  Fixed charge energy = 101.761 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 100.656 kJ/mol
  Per-atom energies:
      Atom 0:  1.017611498797E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.084282010393E+02 kJ/mol
  Fixed charge energy = 208.428 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 203.83 kJ/mol
  Per-atom energies:
      Atom 0:  1.022136878480E+02 kJ/mol
      Atom 1:  1.062145131913E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 8.906694086750E+00 kJ/mol
  Global net ELEC energy = 8.906694086750E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_2.out
RESULT 97.76035707281
RESULT 101.7611498797
RESULT 208.4282010393
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 101.761
RESULT 208.428
RESULT 96.5336
RESULT 100.656
RESULT 203.83
RESULT 8.90669408675
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 1.017611498797E+02 against expected result 1.017611E+02
*** PASSED ***
Testing computed result 2.084282010393E+02 against expected result 2.084282E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 1.017610000000E+02 against expected result 1.017610E+02
*** PASSED ***
Testing computed result 2.084280000000E+02 against expected result 2.084280E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 1.006560000000E+02 against expected result 1.006560E+02
*** PASSED ***
Testing computed result 2.038300000000E+02 against expected result 2.038300E+02
*** PASSED ***
Testing computed result 8.906694086750E+00 against expected result 8.906694E+00
*** PASSED ***
Elapsed time: 0.224825 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_3.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_3.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file complex-0_3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol3.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_3.pqr.
  2 atoms
  Centered at (-1.500e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.337661883222E+02 kJ/mol
  Fixed charge energy = 133.766 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 132.672 kJ/mol
  Per-atom energies:
      Atom 0:  1.337661883222E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.374361452120E+02 kJ/mol
  Fixed charge energy = 237.436 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 232.924 kJ/mol
  Per-atom energies:
      Atom 0:  1.007151570480E+02 kJ/mol
      Atom 1:  1.367209881640E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 5.909599816984E+00 kJ/mol
  Global net ELEC energy = 5.909599816984E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_3.out
RESULT 97.76035707281
RESULT 133.7661883222
RESULT 237.436145212
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 133.766
RESULT 237.436
RESULT 96.5336
RESULT 132.672
RESULT 232.924
RESULT 5.909599816984
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 1.337661883222E+02 against expected result 1.337662E+02
*** PASSED ***
Testing computed result 2.374361452120E+02 against expected result 2.374361E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 1.337660000000E+02 against expected result 1.337660E+02
*** PASSED ***
Testing computed result 2.374360000000E+02 against expected result 2.374360E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 1.326720000000E+02 against expected result 1.326720E+02
*** PASSED ***
Testing computed result 2.329240000000E+02 against expected result 2.329240E+02
*** PASSED ***
Testing computed result 5.909599816984E+00 against expected result 5.909600E+00
*** PASSED ***
Elapsed time: 0.223202 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_4.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_4.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file complex-0_4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol4.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_4.pqr.
  2 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.017611498797E+02 kJ/mol
  Fixed charge energy = 101.761 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 100.654 kJ/mol
  Per-atom energies:
      Atom 0:  1.017611498797E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.061 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.039516519000E+02 kJ/mol
  Fixed charge energy = 203.952 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 199.493 kJ/mol
  Per-atom energies:
      Atom 0:  9.997541697022E+01 kJ/mol
      Atom 1:  1.039762349297E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 4.430144947418E+00 kJ/mol
  Global net ELEC energy = 4.430144947418E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_4.out
RESULT 97.76035707281
RESULT 101.7611498797
RESULT 203.9516519
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 101.761
RESULT 203.952
RESULT 96.5336
RESULT 100.654
RESULT 199.493
RESULT 4.430144947418
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 1.017611498797E+02 against expected result 1.017611E+02
*** PASSED ***
Testing computed result 2.039516519000E+02 against expected result 2.039517E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 1.017610000000E+02 against expected result 1.017610E+02
*** PASSED ***
Testing computed result 2.039520000000E+02 against expected result 2.039520E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 1.006540000000E+02 against expected result 1.006540E+02
*** PASSED ***
Testing computed result 1.994930000000E+02 against expected result 1.994930E+02
*** PASSED ***
Testing computed result 4.430144947418E+00 against expected result 4.430145E+00
*** PASSED ***
Elapsed time: 0.223812 seconds
--------------------------------------------------------------------------------
Total elapsed time: 0.904174 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for solv section
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 2 molecules
Reading PQR-format atom data from methanol.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3 atoms
  Centered at (3.086e-01, 0.000e+00, -2.417e-01)
  Net charge 5.55e-17 e
Reading PQR-format atom data from methoxide.pqr.
  2 atoms
  Centered at (0.000e+00, 0.000e+00, -1.279e-01)
  Net charge -1.00e+00 e
Preparing to run 4 PBE calculations.
----------------------------------------
CALCULATION #1 (methanol-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.253 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.847663548071E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (methanol-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.883912182952E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (methoxide-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.732623683321E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (methoxide-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.123035854133E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (methanol-solv) - 2 (methanol-ref) end
  Local net energy (PE 0) = -3.624863488074E+01 kJ/mol
  Global net ELEC energy = -3.624863488074E+01 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) end
  Local net energy (PE 0) = -3.904121708125E+02 kJ/mol
  Global net ELEC energy = -3.904121708125E+02 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) - 1 (methanol-solv) + 2 (methanol-ref) end
  Local net energy (PE 0) = -3.541635359318E+02 kJ/mol
  Global net ELEC energy = -3.541635359318E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 2 molecules
Final memory usage:  0.001 MB total, 61.328 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol.out
RESULT 1847.663548071
RESULT 1883.912182952
RESULT 2732.623683321
RESULT 3123.035854133
RESULT -36.24863488074
RESULT -390.4121708125
RESULT -354.1635359318
Testing computed result 1.847663548071E+03 against expected result 1.847664E+03
*** PASSED ***
Testing computed result 1.883912182952E+03 against expected result 1.883912E+03
*** PASSED ***
Testing computed result 2.732623683321E+03 against expected result 2.732624E+03
*** PASSED ***
Testing computed result 3.123035854133E+03 against expected result 3.123036E+03
*** PASSED ***
Testing computed result -3.624863488074E+01 against expected result -3.624863E+01
*** PASSED ***
Testing computed result -3.904121708125E+02 against expected result -3.904121E+02
*** PASSED ***
Testing computed result -3.541635359318E+02 against expected result -3.541635E+02
*** PASSED ***
Elapsed time: 0.324133 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 18 2023 at 00:00:00

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 2 molecules
Reading PQR-format atom data from methanol.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3 atoms
  Centered at (3.086e-01, 0.000e+00, -2.417e-01)
  Net charge 5.55e-17 e
Reading PQR-format atom data from methoxide.pqr.
  2 atoms
  Centered at (0.000e+00, 0.000e+00, -1.279e-01)
  Net charge -1.00e+00 e
Preparing to run 4 PBE calculations.
----------------------------------------
CALCULATION #1 (methanol-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.253 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.847860440020E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (methanol-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.885436377745E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (methoxide-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.734040568569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (methoxide-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.125279428954E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (methanol-solv) - 2 (methanol-ref) end
  Local net energy (PE 0) = -3.757593772493E+01 kJ/mol
  Global net ELEC energy = -3.757593772493E+01 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) end
  Local net energy (PE 0) = -3.912388603848E+02 kJ/mol
  Global net ELEC energy = -3.912388603848E+02 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) - 1 (methanol-solv) + 2 (methanol-ref) end
  Local net energy (PE 0) = -3.536629226599E+02 kJ/mol
  Global net ELEC energy = -3.536629226599E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 2 molecules
Final memory usage:  0.001 MB total, 61.328 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol.out
RESULT 1847.86044002
RESULT 1885.436377745
RESULT 2734.040568569
RESULT 3125.279428954
RESULT -37.57593772493
RESULT -391.2388603848
RESULT -353.6629226599
Testing computed result 1.847860440020E+03 against expected result 1.847860E+03
*** PASSED ***
Testing computed result 1.885436377745E+03 against expected result 1.885436E+03
*** PASSED ***
Testing computed result 2.734040568569E+03 against expected result 2.734041E+03
*** PASSED ***
Testing computed result 3.125279428954E+03 against expected result 3.125279E+03
*** PASSED ***
Testing computed result -3.757593772493E+01 against expected result -3.757594E+01
*** PASSED ***
Testing computed result -3.912388603848E+02 against expected result -3.912388E+02
*** PASSED ***
Testing computed result -3.536629226599E+02 against expected result -3.536629E+02
*** PASSED ***
Elapsed time: 0.327563 seconds
--------------------------------------------------------------------------------
Total elapsed time: 0.651696 seconds
Test results have been logged
--------------------------------------------------------------------------------
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: apbs-3.0.0-17.el9.x86_64
Provides: apbs = 3.0.0-17.el9 apbs(x86-64) = 3.0.0-17.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmaloc.so.1()(64bit) libstdc++.so.6()(64bit) rtld(GNU_HASH)
Processing files: apbs-tools-3.0.0-17.el9.x86_64
warning: absolute symlink: /usr/bin/apbs-psize.py -> /usr/lib64/python3.9/site-packages/apbs/psize.py
Provides: apbs-tools = 3.0.0-17.el9 apbs-tools(x86-64) = 3.0.0-17.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaloc.so.1()(64bit) libstdc++.so.6()(64bit) rtld(GNU_HASH)
Processing files: apbs-libs-3.0.0-17.el9.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.MOjH3L
+ umask 022
+ cd /builddir/build/BUILD
+ cd apbs-3.0.0
+ DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/doc/apbs-libs
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/doc/apbs-libs
+ cp -pr README.md /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/doc/apbs-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9BACCy
+ umask 022
+ cd /builddir/build/BUILD
+ cd apbs-3.0.0
+ LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/licenses/apbs-libs
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/licenses/apbs-libs
+ cp -pr LICENSE.md /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/licenses/apbs-libs
+ cp -pr COPYING /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/licenses/apbs-libs
+ cp -pr contrib/iapbs/iapbs-COPYING /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/licenses/apbs-libs
+ cp -pr contrib/iapbs/iapbs-LGPLv2 /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64/usr/share/licenses/apbs-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: apbs-libs = 3.0.0-17.el9 apbs-libs(x86-64) = 3.0.0-17.el9 libapbs.so.1()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Processing files: apbs-devel-3.0.0-17.el9.x86_64
Provides: apbs-devel = 3.0.0-17.el9 apbs-devel(x86-64) = 3.0.0-17.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libapbs.so.1()(64bit)
Processing files: python3-apbs-3.0.0-17.el9.x86_64
Provides: python-apbs = 3.0.0-17.el9 python3-apbs = 3.0.0-17.el9 python3-apbs(x86-64) = 3.0.0-17.el9 python3.9-apbs = 3.0.0-17.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaloc.so.1()(64bit) libpython3.9.so.1.0()(64bit) libstdc++.so.6()(64bit) python(abi) = 3.9 rtld(GNU_HASH)
Obsoletes: apbs-libs < 0:3.0.0-11 python-apbs < 3.0.0-17.el9 python39-apbs < 3.0.0-17.el9
Processing files: apbs-debugsource-3.0.0-17.el9.x86_64
Provides: apbs-debugsource = 3.0.0-17.el9 apbs-debugsource(x86-64) = 3.0.0-17.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: apbs-debuginfo-3.0.0-17.el9.x86_64
Provides: apbs-debuginfo = 3.0.0-17.el9 apbs-debuginfo(x86-64) = 3.0.0-17.el9 debuginfo(build-id) = 2e991587f846540c4f5feb632d4a07bfd9a986fa
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-17.el9
Processing files: apbs-tools-debuginfo-3.0.0-17.el9.x86_64
Provides: apbs-tools-debuginfo = 3.0.0-17.el9 apbs-tools-debuginfo(x86-64) = 3.0.0-17.el9 debuginfo(build-id) = 0025a740af2d44433eb8e5a0030504001d9b5d44 debuginfo(build-id) = 0a24b4a2d62754c8d2bc864865278942d56ad5c1 debuginfo(build-id) = 2016fdddacd90de5c9c617435add707bb0bba71f debuginfo(build-id) = 25d783e8d4227518fa4cf1c2bead89a2819bf93e debuginfo(build-id) = 2a0a45cbe93c00ef83d674f092c00986db4cd732 debuginfo(build-id) = 395c01724f0b1b3e6f2172b12f2d45226cef03f8 debuginfo(build-id) = 595d53451143bcc5e423f40b5884daf81d67ff11 debuginfo(build-id) = 5af52e0c98c320453214ab9d73dc51aeb37ad0aa debuginfo(build-id) = 640444a2e925bbcc81a647e6ce64dd6280b12cd9 debuginfo(build-id) = 7caf7536147c03f8e8ec65c785bbf62b4d12089f debuginfo(build-id) = 7ebe6da0a907ab7f0641d63f47d5f078e8c69058 debuginfo(build-id) = 86fe980a5f3ca96502b29cf2fc26a1d20cbee93f debuginfo(build-id) = 8fc247e148d0fe154f45c0746973eb2a317bc29f debuginfo(build-id) = 9ffa3c3f1ec80c8483d1ddb888533af12f2efac5 debuginfo(build-id) = a9538ac207c1df79a22031456b14122a297c37dd debuginfo(build-id) = e16f37a60aa29c3f59e2f035aab52fef7eec59ab debuginfo(build-id) = fb47b8a6d753b74857766eadcb74f4cec113795c
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-17.el9
Processing files: apbs-libs-debuginfo-3.0.0-17.el9.x86_64
Provides: apbs-libs-debuginfo = 3.0.0-17.el9 apbs-libs-debuginfo(x86-64) = 3.0.0-17.el9 debuginfo(build-id) = 540b15bc9c6409d5ae293b759e110691a83f42bc
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-17.el9
Processing files: python3-apbs-debuginfo-3.0.0-17.el9.x86_64
Provides: debuginfo(build-id) = 6259e6b450e4926863d34e96fdb0f64a3f3550a9 python-apbs-debuginfo = 3.0.0-17.el9 python3-apbs-debuginfo = 3.0.0-17.el9 python3-apbs-debuginfo(x86-64) = 3.0.0-17.el9 python3.9-apbs-debuginfo = 3.0.0-17.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-17.el9
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64
Wrote: /builddir/build/RPMS/python3-apbs-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-libs-debuginfo-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-libs-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-apbs-debuginfo-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-devel-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-debuginfo-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-tools-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-3.0.0-17.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-debugsource-3.0.0-17.el9.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ykc3vi
+ umask 022
+ cd /builddir/build/BUILD
+ cd apbs-3.0.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-17.el9.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild apbs-3.0.0-17.el9.src.rpm
Finish: build phase for apbs-3.0.0-17.el9.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-9-x86_64-1777471069.527430/root/var/log/dnf.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/apbs-3.0.0-17.el9.src.rpm) Config(child) 6 minutes 51 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "apbs",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "src"
        },
        {
            "name": "python3-apbs",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-devel",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "python3-apbs-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-debugsource",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-tools",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-libs-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-tools-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        },
        {
            "name": "apbs-libs",
            "epoch": null,
            "version": "3.0.0",
            "release": "17.el9",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished